Wall clock time and date at job start Wed Apr 1 2020 06:15:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47193 * 2 1 4 4 N 1.30446 * 125.98568 * 270.04169 * 3 2 1 5 5 N 1.39932 * 108.90194 * 179.97438 * 4 3 2 6 6 H 0.96994 * 125.76185 * 179.97438 * 5 4 3 7 7 C 1.34269 * 108.48420 * 359.75037 * 5 4 3 8 8 C 1.38043 * 107.41720 * 0.39019 * 7 5 4 9 9 C 1.47432 * 126.41310 * 179.86854 * 8 7 5 10 10 O 1.21597 * 120.00073 * 179.68933 * 9 8 7 11 11 N 1.34778 * 119.99839 * 359.69694 * 9 8 7 12 12 C 1.47021 * 125.65061 * 0.03693 * 11 9 8 13 13 C 1.54320 * 107.27205 * 178.90919 * 12 11 9 14 14 C 1.55161 * 102.94277 * 337.80356 * 13 12 11 15 15 H 1.08999 * 111.03666 * 277.42064 * 14 13 12 16 16 N 1.46901 * 111.00162 * 153.57644 * 14 13 12 17 17 C 1.46906 * 110.99319 * 186.41316 * 16 14 13 18 18 C 1.53247 * 109.33510 * 172.74898 * 17 16 14 19 19 N 1.47076 * 108.52044 * 53.83045 * 18 17 16 20 20 C 1.36938 * 120.88133 * 128.79288 * 19 18 17 21 21 H 1.08002 * 119.99773 * 209.22304 * 20 19 18 22 22 C 1.38811 * 119.99881 * 29.22940 * 20 19 18 23 23 N 1.31620 * 119.99971 * 13.11631 * 22 20 19 24 24 Si 1.86801 * 119.99999 * 193.11309 * 22 20 19 25 25 H 1.48503 * 109.47034 * 59.99980 * 24 22 20 26 26 H 1.48497 * 109.47250 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47028 * 300.00167 * 24 22 20 28 28 C 1.47080 * 118.23679 * 308.81325 * 19 18 17 29 29 C 1.46893 * 110.99893 * 62.11687 * 16 14 13 30 30 C 1.47424 * 125.64507 * 180.02562 * 11 9 8 31 31 H 1.09005 * 109.47032 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47697 * 300.00521 * 1 2 3 33 33 H 1.09005 * 109.47064 * 60.00514 * 1 2 3 34 34 H 1.09001 * 109.47477 * 239.99401 * 2 1 3 35 35 H 1.09005 * 109.47064 * 119.99486 * 2 1 3 36 36 H 1.08001 * 126.28435 * 180.24585 * 7 5 4 37 37 H 1.09006 * 109.88112 * 298.32557 * 12 11 9 38 38 H 1.08996 * 109.88447 * 59.33341 * 12 11 9 39 39 H 1.09006 * 110.71926 * 219.44516 * 13 12 11 40 40 H 1.08995 * 110.72141 * 96.17096 * 13 12 11 41 41 H 1.09005 * 109.49285 * 292.70315 * 17 16 14 42 42 H 1.08994 * 109.49348 * 52.79238 * 17 16 14 43 43 H 1.09002 * 109.62621 * 294.12052 * 18 17 16 44 44 H 1.08995 * 109.62763 * 173.53815 * 18 17 16 45 45 H 0.97001 * 119.99670 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.62837 * 291.47452 * 28 19 18 47 47 H 1.09000 * 109.62860 * 170.89519 * 28 19 18 48 48 H 1.09001 * 109.49133 * 307.20450 * 29 16 14 49 49 H 1.08996 * 109.50203 * 67.26066 * 29 16 14 50 50 H 1.08997 * 110.36761 * 85.32482 * 30 11 9 51 51 H 1.09004 * 110.36633 * 322.99860 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2871 2.1437 -1.0555 5 7 2.7327 3.4049 -0.6444 6 1 2.9902 4.1338 -1.2303 7 6 2.7390 3.4375 0.6978 8 6 2.3092 2.2036 1.1431 9 6 2.1610 1.7833 2.5485 10 8 1.7651 0.6636 2.8097 11 7 2.4641 2.6402 3.5437 12 6 2.9499 4.0170 3.3707 13 6 3.1334 4.6186 4.7799 14 6 2.2030 3.7395 5.6569 15 1 1.1707 4.0846 5.5998 16 7 2.6684 3.7074 7.0499 17 6 1.8800 2.7575 7.8464 18 6 2.5074 2.6187 9.2376 19 7 2.6432 3.9603 9.8248 20 6 2.1683 4.2291 11.0808 21 1 1.8347 5.2256 11.3301 22 6 2.1158 3.2209 12.0335 23 7 2.7504 2.0865 11.8268 24 14 1.1445 3.4742 13.6089 25 1 -0.2804 3.7283 13.2765 26 1 1.2457 2.2573 14.4539 27 1 1.6955 4.6382 14.3483 28 6 3.3022 5.0056 9.0272 29 6 2.6436 5.0504 7.6443 30 6 2.3632 2.3521 4.9860 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.0294 4.2745 1.3155 37 1 3.9039 4.0100 2.8435 38 1 2.2202 4.5997 2.8085 39 1 2.8114 5.6598 4.7997 40 1 4.1695 4.5280 5.1059 41 1 0.8581 3.1242 7.9432 42 1 1.8731 1.7862 7.3519 43 1 3.4904 2.1554 9.1514 44 1 1.8648 2.0057 9.8695 45 1 2.7134 1.3818 12.4924 46 1 4.3615 4.7718 8.9208 47 1 3.1851 5.9707 9.5200 48 1 3.1904 5.7420 7.0033 49 1 1.6111 5.3855 7.7434 50 1 3.2704 1.8621 5.3393 51 1 1.4914 1.7299 5.1885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052048392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:13 Heat of formation + Delta-G solvation = 81.912259 kcal Electronic energy + Delta-G solvation = -31068.158220 eV Core-core repulsion = 27005.156173 eV Total energy + Delta-G solvation = -4063.002047 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.81812 -39.91416 -38.30453 -36.80316 -34.52919 -34.12161 -31.88974 -30.87827 -30.73558 -30.53749 -29.63093 -28.38050 -25.99658 -24.48754 -24.26860 -22.94995 -22.74760 -21.66625 -20.81428 -20.20698 -19.60375 -19.15618 -17.75026 -17.07582 -16.86158 -16.25456 -15.59152 -15.34593 -14.92074 -14.86795 -14.47716 -14.31594 -14.21464 -14.01188 -13.86169 -13.49245 -13.46821 -13.35018 -13.05439 -12.77711 -12.57572 -12.55594 -12.29182 -11.81927 -11.62534 -11.43606 -11.39125 -11.19472 -11.03661 -11.00822 -10.91096 -10.73267 -10.46275 -10.30465 -10.04063 -9.93673 -9.84925 -9.74928 -9.59910 -9.16903 -8.71514 -8.50924 -7.91278 -6.63035 -5.77548 -3.22736 1.17083 1.87458 2.30635 2.87445 3.27814 3.38214 3.44101 3.44690 4.10017 4.17515 4.26909 4.38659 4.49371 4.51676 4.78073 4.81064 4.90446 5.05308 5.15897 5.22460 5.23239 5.28397 5.32420 5.40871 5.41804 5.45474 5.68464 5.79027 5.79763 5.83079 5.89313 5.92951 5.93485 6.03916 6.08011 6.13017 6.17607 6.21012 6.28323 6.33038 6.52087 6.68519 6.71218 6.90996 7.18381 7.23566 7.43133 7.55326 7.63714 7.70207 7.80795 8.15243 8.45672 9.22138 9.84241 10.43651 11.31026 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.002120 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.533777 B =13205.330170 C =14088.825118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.050 4.050 3 C 0.140 3.860 4 N -0.300 5.300 5 N -0.464 5.464 6 H 0.443 0.557 7 C 0.091 3.909 8 C -0.280 4.280 9 C 0.607 3.393 10 O -0.537 6.537 11 N -0.615 5.615 12 C 0.095 3.905 13 C -0.124 4.124 14 C 0.068 3.932 15 H 0.050 0.950 16 N -0.520 5.520 17 C 0.032 3.968 18 C 0.180 3.820 19 N -0.595 5.595 20 C -0.254 4.254 21 H 0.064 0.936 22 C 0.003 3.997 23 N -0.904 5.904 24 Si 0.904 3.096 25 H -0.284 1.284 26 H -0.290 1.290 27 H -0.283 1.283 28 C 0.149 3.851 29 C 0.045 3.955 30 C 0.119 3.881 31 H 0.063 0.937 32 H 0.059 0.941 33 H 0.051 0.949 34 H 0.076 0.924 35 H 0.102 0.898 36 H 0.196 0.804 37 H 0.071 0.929 38 H 0.068 0.932 39 H 0.080 0.920 40 H 0.091 0.909 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.088 0.912 45 H 0.255 0.745 46 H 0.025 0.975 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.027 0.973 50 H 0.082 0.918 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.240 4.831 -25.262 25.721 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.089 4.089 3 C -0.029 4.029 4 N -0.122 5.122 5 N -0.168 5.168 6 H 0.288 0.712 7 C -0.062 4.062 8 C -0.294 4.294 9 C 0.397 3.603 10 O -0.414 6.414 11 N -0.349 5.349 12 C -0.028 4.028 13 C -0.162 4.162 14 C -0.041 4.041 15 H 0.068 0.932 16 N -0.246 5.246 17 C -0.097 4.097 18 C 0.054 3.946 19 N -0.319 5.319 20 C -0.384 4.384 21 H 0.081 0.919 22 C -0.195 4.195 23 N -0.548 5.548 24 Si 0.734 3.266 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.022 3.978 29 C -0.084 4.084 30 C -0.003 4.003 31 H 0.082 0.918 32 H 0.078 0.922 33 H 0.070 0.930 34 H 0.094 0.906 35 H 0.121 0.879 36 H 0.212 0.788 37 H 0.089 0.911 38 H 0.086 0.914 39 H 0.099 0.901 40 H 0.110 0.890 41 H 0.044 0.956 42 H 0.082 0.918 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.065 0.935 46 H 0.043 0.957 47 H 0.073 0.927 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.100 0.900 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 0.520 3.888 -26.310 26.601 hybrid contribution -1.085 1.081 1.383 2.064 sum -0.565 4.969 -24.927 25.424 Atomic orbital electron populations 1.21616 0.93893 1.02213 1.01945 1.20149 0.96599 0.87938 1.04244 1.22496 0.94800 0.97014 0.88550 1.77158 1.21826 0.90721 1.22492 1.46153 1.51735 1.13334 1.05564 0.71207 1.23945 0.97194 0.99402 0.85614 1.20241 1.19374 0.95440 0.94394 1.16838 0.76946 0.83776 0.82768 1.90763 1.47228 1.19602 1.83821 1.48211 1.66303 1.13721 1.06691 1.22335 0.98646 0.83052 0.98812 1.22723 1.02083 0.99074 0.92347 1.22753 0.96646 0.94472 0.90268 0.93173 1.62026 1.54127 1.09015 0.99395 1.22972 0.94974 0.94276 0.97445 1.20857 0.98546 0.87432 0.87804 1.44081 1.66447 1.06905 1.14441 1.19118 1.35347 0.96497 0.87399 0.91867 1.25112 0.99305 0.97582 0.97546 1.69979 1.43143 1.06214 1.35467 0.86352 0.80058 0.77011 0.83186 1.21086 1.21582 1.20895 1.20976 0.94710 0.93092 0.88994 1.22631 0.99158 0.88805 0.97830 1.22226 1.03103 0.96923 0.78076 0.91763 0.92156 0.93026 0.90564 0.87945 0.78794 0.91095 0.91402 0.90149 0.89019 0.95589 0.91845 0.95455 0.89370 0.93502 0.95662 0.92663 0.91892 0.95447 0.89974 0.90372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.34 9.89 37.15 0.37 -0.97 16 2 C -0.05 -0.52 5.97 -27.89 -0.17 -0.69 16 3 C 0.14 1.59 6.52 -82.02 -0.53 1.06 16 4 N -0.30 -3.17 12.63 33.89 0.43 -2.74 16 5 N -0.46 -3.25 7.29 30.85 0.22 -3.03 16 6 H 0.44 1.42 8.96 -182.73 -1.64 -0.22 16 7 C 0.09 0.66 10.49 -16.56 -0.17 0.49 16 8 C -0.28 -3.09 6.10 -105.07 -0.64 -3.73 16 9 C 0.61 8.07 7.85 -12.52 -0.10 7.97 16 10 O -0.54 -8.79 15.17 5.28 0.08 -8.71 16 11 N -0.61 -7.18 3.33 -171.77 -0.57 -7.75 16 12 C 0.10 0.74 4.99 -3.07 -0.02 0.73 16 13 C -0.12 -1.15 5.34 -24.90 -0.13 -1.28 16 14 C 0.07 0.88 2.72 -65.55 -0.18 0.70 16 15 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 16 N -0.52 -8.49 4.53 -223.75 -1.01 -9.51 16 17 C 0.03 0.61 5.48 -3.69 -0.02 0.59 16 18 C 0.18 4.26 5.38 -3.60 -0.02 4.25 16 19 N -0.60 -14.80 3.03 -172.01 -0.52 -15.32 16 20 C -0.25 -6.91 9.62 -15.06 -0.14 -7.05 16 21 H 0.06 1.68 7.86 -52.49 -0.41 1.27 16 22 C 0.00 0.09 5.01 -17.43 -0.09 0.00 16 23 N -0.90 -26.12 11.11 55.49 0.62 -25.50 16 24 Si 0.90 21.59 29.57 -169.99 -5.03 16.56 16 25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 28 C 0.15 3.04 6.69 -3.60 -0.02 3.01 16 29 C 0.05 0.74 5.48 -3.70 -0.02 0.72 16 30 C 0.12 1.59 5.31 -2.51 -0.01 1.58 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 35 H 0.10 1.21 6.55 -51.93 -0.34 0.87 16 36 H 0.20 0.75 4.42 -52.49 -0.23 0.52 16 37 H 0.07 0.42 7.03 -51.93 -0.36 0.06 16 38 H 0.07 0.40 6.82 -51.93 -0.35 0.05 16 39 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16 40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.06 1.11 6.79 -51.93 -0.35 0.76 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.34 6.20 -51.93 -0.32 2.02 16 45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.05 1.08 7.95 -51.93 -0.41 0.67 16 48 H 0.06 0.84 6.87 -51.93 -0.36 0.49 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16 50 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.08 1.15 7.74 -51.93 -0.40 0.74 16 LS Contribution 393.83 15.07 5.93 5.93 Total: -1.00 -33.77 393.83 -11.14 -44.91 By element: Atomic # 1 Polarization: 7.16 SS G_CDS: -9.39 Total: -2.23 kcal Atomic # 6 Polarization: 9.29 SS G_CDS: -1.90 Total: 7.38 kcal Atomic # 7 Polarization: -63.01 SS G_CDS: -0.84 Total: -63.85 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal Total LS contribution 5.93 Total: 5.93 kcal Total: -33.77 -11.14 -44.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052048392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.821 kcal (2) G-P(sol) polarization free energy of solvation -33.773 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.048 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 81.912 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds