Wall clock time and date at job start Wed Apr 1 2020 06:15:13
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52992 * 1
3 3 C 1.50704 * 109.47193 * 2 1
4 4 N 1.30446 * 125.98568 * 270.04169 * 3 2 1
5 5 N 1.39932 * 108.90194 * 179.97438 * 4 3 2
6 6 H 0.96994 * 125.76185 * 179.97438 * 5 4 3
7 7 C 1.34269 * 108.48420 * 359.75037 * 5 4 3
8 8 C 1.38043 * 107.41720 * 0.39019 * 7 5 4
9 9 C 1.47432 * 126.41310 * 179.86854 * 8 7 5
10 10 O 1.21597 * 120.00073 * 179.68933 * 9 8 7
11 11 N 1.34778 * 119.99839 * 359.69694 * 9 8 7
12 12 C 1.47021 * 125.65061 * 0.03693 * 11 9 8
13 13 C 1.54320 * 107.27205 * 178.90919 * 12 11 9
14 14 C 1.55161 * 102.94277 * 337.80356 * 13 12 11
15 15 H 1.08999 * 111.03666 * 277.42064 * 14 13 12
16 16 N 1.46901 * 111.00162 * 153.57644 * 14 13 12
17 17 C 1.46906 * 110.99319 * 186.41316 * 16 14 13
18 18 C 1.53247 * 109.33510 * 172.74898 * 17 16 14
19 19 N 1.47076 * 108.52044 * 53.83045 * 18 17 16
20 20 C 1.36938 * 120.88133 * 128.79288 * 19 18 17
21 21 H 1.08002 * 119.99773 * 209.22304 * 20 19 18
22 22 C 1.38811 * 119.99881 * 29.22940 * 20 19 18
23 23 N 1.31620 * 119.99971 * 13.11631 * 22 20 19
24 24 Si 1.86801 * 119.99999 * 193.11309 * 22 20 19
25 25 H 1.48503 * 109.47034 * 59.99980 * 24 22 20
26 26 H 1.48497 * 109.47250 * 179.97438 * 24 22 20
27 27 H 1.48504 * 109.47028 * 300.00167 * 24 22 20
28 28 C 1.47080 * 118.23679 * 308.81325 * 19 18 17
29 29 C 1.46893 * 110.99893 * 62.11687 * 16 14 13
30 30 C 1.47424 * 125.64507 * 180.02562 * 11 9 8
31 31 H 1.09005 * 109.47032 * 180.02562 * 1 2 3
32 32 H 1.08992 * 109.47697 * 300.00521 * 1 2 3
33 33 H 1.09005 * 109.47064 * 60.00514 * 1 2 3
34 34 H 1.09001 * 109.47477 * 239.99401 * 2 1 3
35 35 H 1.09005 * 109.47064 * 119.99486 * 2 1 3
36 36 H 1.08001 * 126.28435 * 180.24585 * 7 5 4
37 37 H 1.09006 * 109.88112 * 298.32557 * 12 11 9
38 38 H 1.08996 * 109.88447 * 59.33341 * 12 11 9
39 39 H 1.09006 * 110.71926 * 219.44516 * 13 12 11
40 40 H 1.08995 * 110.72141 * 96.17096 * 13 12 11
41 41 H 1.09005 * 109.49285 * 292.70315 * 17 16 14
42 42 H 1.08994 * 109.49348 * 52.79238 * 17 16 14
43 43 H 1.09002 * 109.62621 * 294.12052 * 18 17 16
44 44 H 1.08995 * 109.62763 * 173.53815 * 18 17 16
45 45 H 0.97001 * 119.99670 * 180.02562 * 23 22 20
46 46 H 1.09000 * 109.62837 * 291.47452 * 28 19 18
47 47 H 1.09000 * 109.62860 * 170.89519 * 28 19 18
48 48 H 1.09001 * 109.49133 * 307.20450 * 29 16 14
49 49 H 1.08996 * 109.50203 * 67.26066 * 29 16 14
50 50 H 1.08997 * 110.36761 * 85.32482 * 30 11 9
51 51 H 1.09004 * 110.36633 * 322.99860 * 30 11 9
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5299 0.0000 0.0000
3 6 2.0323 1.4208 0.0000
4 7 2.2871 2.1437 -1.0555
5 7 2.7327 3.4049 -0.6444
6 1 2.9902 4.1338 -1.2303
7 6 2.7390 3.4375 0.6978
8 6 2.3092 2.2036 1.1431
9 6 2.1610 1.7833 2.5485
10 8 1.7651 0.6636 2.8097
11 7 2.4641 2.6402 3.5437
12 6 2.9499 4.0170 3.3707
13 6 3.1334 4.6186 4.7799
14 6 2.2030 3.7395 5.6569
15 1 1.1707 4.0846 5.5998
16 7 2.6684 3.7074 7.0499
17 6 1.8800 2.7575 7.8464
18 6 2.5074 2.6187 9.2376
19 7 2.6432 3.9603 9.8248
20 6 2.1683 4.2291 11.0808
21 1 1.8347 5.2256 11.3301
22 6 2.1158 3.2209 12.0335
23 7 2.7504 2.0865 11.8268
24 14 1.1445 3.4742 13.6089
25 1 -0.2804 3.7283 13.2765
26 1 1.2457 2.2573 14.4539
27 1 1.6955 4.6382 14.3483
28 6 3.3022 5.0056 9.0272
29 6 2.6436 5.0504 7.6443
30 6 2.3632 2.3521 4.9860
31 1 -0.3633 -1.0277 0.0005
32 1 -0.3634 0.5139 0.8898
33 1 -0.3633 0.5138 -0.8901
34 1 1.8933 -0.5139 -0.8899
35 1 1.8933 -0.5138 0.8901
36 1 3.0294 4.2745 1.3155
37 1 3.9039 4.0100 2.8435
38 1 2.2202 4.5997 2.8085
39 1 2.8114 5.6598 4.7997
40 1 4.1695 4.5280 5.1059
41 1 0.8581 3.1242 7.9432
42 1 1.8731 1.7862 7.3519
43 1 3.4904 2.1554 9.1514
44 1 1.8648 2.0057 9.8695
45 1 2.7134 1.3818 12.4924
46 1 4.3615 4.7718 8.9208
47 1 3.1851 5.9707 9.5200
48 1 3.1904 5.7420 7.0033
49 1 1.6111 5.3855 7.7434
50 1 3.2704 1.8621 5.3393
51 1 1.4914 1.7299 5.1885
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001052048392.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 06:15:13
Heat of formation + Delta-G solvation = 81.912259 kcal
Electronic energy + Delta-G solvation = -31068.158220 eV
Core-core repulsion = 27005.156173 eV
Total energy + Delta-G solvation = -4063.002047 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-41.81812 -39.91416 -38.30453 -36.80316 -34.52919 -34.12161 -31.88974 -30.87827
-30.73558 -30.53749 -29.63093 -28.38050 -25.99658 -24.48754 -24.26860 -22.94995
-22.74760 -21.66625 -20.81428 -20.20698 -19.60375 -19.15618 -17.75026 -17.07582
-16.86158 -16.25456 -15.59152 -15.34593 -14.92074 -14.86795 -14.47716 -14.31594
-14.21464 -14.01188 -13.86169 -13.49245 -13.46821 -13.35018 -13.05439 -12.77711
-12.57572 -12.55594 -12.29182 -11.81927 -11.62534 -11.43606 -11.39125 -11.19472
-11.03661 -11.00822 -10.91096 -10.73267 -10.46275 -10.30465 -10.04063 -9.93673
-9.84925 -9.74928 -9.59910 -9.16903 -8.71514 -8.50924 -7.91278 -6.63035
-5.77548 -3.22736 1.17083 1.87458 2.30635 2.87445 3.27814 3.38214
3.44101 3.44690 4.10017 4.17515 4.26909 4.38659 4.49371 4.51676
4.78073 4.81064 4.90446 5.05308 5.15897 5.22460 5.23239 5.28397
5.32420 5.40871 5.41804 5.45474 5.68464 5.79027 5.79763 5.83079
5.89313 5.92951 5.93485 6.03916 6.08011 6.13017 6.17607 6.21012
6.28323 6.33038 6.52087 6.68519 6.71218 6.90996 7.18381 7.23566
7.43133 7.55326 7.63714 7.70207 7.80795 8.15243 8.45672 9.22138
9.84241 10.43651 11.31026
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.023068 B = 0.002120 C = 0.001987
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1213.533777 B =13205.330170 C =14088.825118
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.138 4.138
2 C -0.050 4.050
3 C 0.140 3.860
4 N -0.300 5.300
5 N -0.464 5.464
6 H 0.443 0.557
7 C 0.091 3.909
8 C -0.280 4.280
9 C 0.607 3.393
10 O -0.537 6.537
11 N -0.615 5.615
12 C 0.095 3.905
13 C -0.124 4.124
14 C 0.068 3.932
15 H 0.050 0.950
16 N -0.520 5.520
17 C 0.032 3.968
18 C 0.180 3.820
19 N -0.595 5.595
20 C -0.254 4.254
21 H 0.064 0.936
22 C 0.003 3.997
23 N -0.904 5.904
24 Si 0.904 3.096
25 H -0.284 1.284
26 H -0.290 1.290
27 H -0.283 1.283
28 C 0.149 3.851
29 C 0.045 3.955
30 C 0.119 3.881
31 H 0.063 0.937
32 H 0.059 0.941
33 H 0.051 0.949
34 H 0.076 0.924
35 H 0.102 0.898
36 H 0.196 0.804
37 H 0.071 0.929
38 H 0.068 0.932
39 H 0.080 0.920
40 H 0.091 0.909
41 H 0.026 0.974
42 H 0.063 0.937
43 H 0.027 0.973
44 H 0.088 0.912
45 H 0.255 0.745
46 H 0.025 0.975
47 H 0.055 0.945
48 H 0.063 0.937
49 H 0.027 0.973
50 H 0.082 0.918
51 H 0.078 0.922
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 0.240 4.831 -25.262 25.721
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.197 4.197
2 C -0.089 4.089
3 C -0.029 4.029
4 N -0.122 5.122
5 N -0.168 5.168
6 H 0.288 0.712
7 C -0.062 4.062
8 C -0.294 4.294
9 C 0.397 3.603
10 O -0.414 6.414
11 N -0.349 5.349
12 C -0.028 4.028
13 C -0.162 4.162
14 C -0.041 4.041
15 H 0.068 0.932
16 N -0.246 5.246
17 C -0.097 4.097
18 C 0.054 3.946
19 N -0.319 5.319
20 C -0.384 4.384
21 H 0.081 0.919
22 C -0.195 4.195
23 N -0.548 5.548
24 Si 0.734 3.266
25 H -0.211 1.211
26 H -0.216 1.216
27 H -0.209 1.209
28 C 0.022 3.978
29 C -0.084 4.084
30 C -0.003 4.003
31 H 0.082 0.918
32 H 0.078 0.922
33 H 0.070 0.930
34 H 0.094 0.906
35 H 0.121 0.879
36 H 0.212 0.788
37 H 0.089 0.911
38 H 0.086 0.914
39 H 0.099 0.901
40 H 0.110 0.890
41 H 0.044 0.956
42 H 0.082 0.918
43 H 0.045 0.955
44 H 0.106 0.894
45 H 0.065 0.935
46 H 0.043 0.957
47 H 0.073 0.927
48 H 0.081 0.919
49 H 0.046 0.954
50 H 0.100 0.900
51 H 0.096 0.904
Dipole moment (debyes) X Y Z Total
from point charges 0.520 3.888 -26.310 26.601
hybrid contribution -1.085 1.081 1.383 2.064
sum -0.565 4.969 -24.927 25.424
Atomic orbital electron populations
1.21616 0.93893 1.02213 1.01945 1.20149 0.96599 0.87938 1.04244
1.22496 0.94800 0.97014 0.88550 1.77158 1.21826 0.90721 1.22492
1.46153 1.51735 1.13334 1.05564 0.71207 1.23945 0.97194 0.99402
0.85614 1.20241 1.19374 0.95440 0.94394 1.16838 0.76946 0.83776
0.82768 1.90763 1.47228 1.19602 1.83821 1.48211 1.66303 1.13721
1.06691 1.22335 0.98646 0.83052 0.98812 1.22723 1.02083 0.99074
0.92347 1.22753 0.96646 0.94472 0.90268 0.93173 1.62026 1.54127
1.09015 0.99395 1.22972 0.94974 0.94276 0.97445 1.20857 0.98546
0.87432 0.87804 1.44081 1.66447 1.06905 1.14441 1.19118 1.35347
0.96497 0.87399 0.91867 1.25112 0.99305 0.97582 0.97546 1.69979
1.43143 1.06214 1.35467 0.86352 0.80058 0.77011 0.83186 1.21086
1.21582 1.20895 1.20976 0.94710 0.93092 0.88994 1.22631 0.99158
0.88805 0.97830 1.22226 1.03103 0.96923 0.78076 0.91763 0.92156
0.93026 0.90564 0.87945 0.78794 0.91095 0.91402 0.90149 0.89019
0.95589 0.91845 0.95455 0.89370 0.93502 0.95662 0.92663 0.91892
0.95447 0.89974 0.90372
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.14 -1.34 9.89 37.15 0.37 -0.97 16
2 C -0.05 -0.52 5.97 -27.89 -0.17 -0.69 16
3 C 0.14 1.59 6.52 -82.02 -0.53 1.06 16
4 N -0.30 -3.17 12.63 33.89 0.43 -2.74 16
5 N -0.46 -3.25 7.29 30.85 0.22 -3.03 16
6 H 0.44 1.42 8.96 -182.73 -1.64 -0.22 16
7 C 0.09 0.66 10.49 -16.56 -0.17 0.49 16
8 C -0.28 -3.09 6.10 -105.07 -0.64 -3.73 16
9 C 0.61 8.07 7.85 -12.52 -0.10 7.97 16
10 O -0.54 -8.79 15.17 5.28 0.08 -8.71 16
11 N -0.61 -7.18 3.33 -171.77 -0.57 -7.75 16
12 C 0.10 0.74 4.99 -3.07 -0.02 0.73 16
13 C -0.12 -1.15 5.34 -24.90 -0.13 -1.28 16
14 C 0.07 0.88 2.72 -65.55 -0.18 0.70 16
15 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16
16 N -0.52 -8.49 4.53 -223.75 -1.01 -9.51 16
17 C 0.03 0.61 5.48 -3.69 -0.02 0.59 16
18 C 0.18 4.26 5.38 -3.60 -0.02 4.25 16
19 N -0.60 -14.80 3.03 -172.01 -0.52 -15.32 16
20 C -0.25 -6.91 9.62 -15.06 -0.14 -7.05 16
21 H 0.06 1.68 7.86 -52.49 -0.41 1.27 16
22 C 0.00 0.09 5.01 -17.43 -0.09 0.00 16
23 N -0.90 -26.12 11.11 55.49 0.62 -25.50 16
24 Si 0.90 21.59 29.57 -169.99 -5.03 16.56 16
25 H -0.28 -6.73 7.11 56.52 0.40 -6.32 16
26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16
27 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16
28 C 0.15 3.04 6.69 -3.60 -0.02 3.01 16
29 C 0.05 0.74 5.48 -3.70 -0.02 0.72 16
30 C 0.12 1.59 5.31 -2.51 -0.01 1.58 16
31 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16
32 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16
33 H 0.05 0.47 8.14 -51.93 -0.42 0.05 16
34 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16
35 H 0.10 1.21 6.55 -51.93 -0.34 0.87 16
36 H 0.20 0.75 4.42 -52.49 -0.23 0.52 16
37 H 0.07 0.42 7.03 -51.93 -0.36 0.06 16
38 H 0.07 0.40 6.82 -51.93 -0.35 0.05 16
39 H 0.08 0.62 7.94 -51.93 -0.41 0.21 16
40 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16
41 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16
42 H 0.06 1.11 6.79 -51.93 -0.35 0.76 16
43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16
44 H 0.09 2.34 6.20 -51.93 -0.32 2.02 16
45 H 0.25 7.15 8.31 -40.82 -0.34 6.81 16
46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16
47 H 0.05 1.08 7.95 -51.93 -0.41 0.67 16
48 H 0.06 0.84 6.87 -51.93 -0.36 0.49 16
49 H 0.03 0.48 8.14 -51.93 -0.42 0.05 16
50 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16
51 H 0.08 1.15 7.74 -51.93 -0.40 0.74 16
LS Contribution 393.83 15.07 5.93 5.93
Total: -1.00 -33.77 393.83 -11.14 -44.91
By element:
Atomic # 1 Polarization: 7.16 SS G_CDS: -9.39 Total: -2.23 kcal
Atomic # 6 Polarization: 9.29 SS G_CDS: -1.90 Total: 7.38 kcal
Atomic # 7 Polarization: -63.01 SS G_CDS: -0.84 Total: -63.85 kcal
Atomic # 8 Polarization: -8.79 SS G_CDS: 0.08 Total: -8.71 kcal
Atomic # 14 Polarization: 21.59 SS G_CDS: -5.03 Total: 16.56 kcal
Total LS contribution 5.93 Total: 5.93 kcal
Total: -33.77 -11.14 -44.91 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052048392.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 126.821 kcal
(2) G-P(sol) polarization free energy of solvation -33.773 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.048 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.136 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.909 kcal
(6) G-S(sol) free energy of system = (1) + (5) 81.912 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds