Wall clock time and date at job start Wed Apr 1 2020 06:15:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.50704 * 109.47193 * 2 1 4 4 N 1.30446 * 125.98568 * 270.04169 * 3 2 1 5 5 N 1.39932 * 108.90194 * 179.97438 * 4 3 2 6 6 H 0.96994 * 125.76185 * 179.97438 * 5 4 3 7 7 C 1.34269 * 108.48420 * 359.75037 * 5 4 3 8 8 C 1.38043 * 107.41720 * 0.39019 * 7 5 4 9 9 C 1.47432 * 126.41310 * 179.86854 * 8 7 5 10 10 O 1.21597 * 120.00073 * 179.68933 * 9 8 7 11 11 N 1.34778 * 119.99839 * 359.69694 * 9 8 7 12 12 C 1.47021 * 125.65061 * 0.03693 * 11 9 8 13 13 C 1.54320 * 107.27205 * 178.90919 * 12 11 9 14 14 C 1.55161 * 102.94277 * 337.80356 * 13 12 11 15 15 H 1.08999 * 111.03666 * 277.42064 * 14 13 12 16 16 N 1.46901 * 111.00162 * 153.57644 * 14 13 12 17 17 C 1.46906 * 110.99319 * 186.41316 * 16 14 13 18 18 C 1.53247 * 109.33510 * 172.74898 * 17 16 14 19 19 N 1.47076 * 108.52044 * 53.83045 * 18 17 16 20 20 C 1.36938 * 120.88133 * 128.79288 * 19 18 17 21 21 H 1.08002 * 119.99773 * 209.22304 * 20 19 18 22 22 C 1.38811 * 119.99881 * 29.22940 * 20 19 18 23 23 N 1.31620 * 119.99971 * 13.11631 * 22 20 19 24 24 Si 1.86801 * 119.99999 * 193.11309 * 22 20 19 25 25 H 1.48503 * 109.47034 * 59.99980 * 24 22 20 26 26 H 1.48497 * 109.47250 * 179.97438 * 24 22 20 27 27 H 1.48504 * 109.47028 * 300.00167 * 24 22 20 28 28 C 1.47080 * 118.23679 * 308.81325 * 19 18 17 29 29 C 1.46893 * 110.99893 * 62.11687 * 16 14 13 30 30 C 1.47424 * 125.64507 * 180.02562 * 11 9 8 31 31 H 1.09005 * 109.47032 * 180.02562 * 1 2 3 32 32 H 1.08992 * 109.47697 * 300.00521 * 1 2 3 33 33 H 1.09005 * 109.47064 * 60.00514 * 1 2 3 34 34 H 1.09001 * 109.47477 * 239.99401 * 2 1 3 35 35 H 1.09005 * 109.47064 * 119.99486 * 2 1 3 36 36 H 1.08001 * 126.28435 * 180.24585 * 7 5 4 37 37 H 1.09006 * 109.88112 * 298.32557 * 12 11 9 38 38 H 1.08996 * 109.88447 * 59.33341 * 12 11 9 39 39 H 1.09006 * 110.71926 * 219.44516 * 13 12 11 40 40 H 1.08995 * 110.72141 * 96.17096 * 13 12 11 41 41 H 1.09005 * 109.49285 * 292.70315 * 17 16 14 42 42 H 1.08994 * 109.49348 * 52.79238 * 17 16 14 43 43 H 1.09002 * 109.62621 * 294.12052 * 18 17 16 44 44 H 1.08995 * 109.62763 * 173.53815 * 18 17 16 45 45 H 0.97001 * 119.99670 * 180.02562 * 23 22 20 46 46 H 1.09000 * 109.62837 * 291.47452 * 28 19 18 47 47 H 1.09000 * 109.62860 * 170.89519 * 28 19 18 48 48 H 1.09001 * 109.49133 * 307.20450 * 29 16 14 49 49 H 1.08996 * 109.50203 * 67.26066 * 29 16 14 50 50 H 1.08997 * 110.36761 * 85.32482 * 30 11 9 51 51 H 1.09004 * 110.36633 * 322.99860 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2871 2.1437 -1.0555 5 7 2.7327 3.4049 -0.6444 6 1 2.9902 4.1338 -1.2303 7 6 2.7390 3.4375 0.6978 8 6 2.3092 2.2036 1.1431 9 6 2.1610 1.7833 2.5485 10 8 1.7651 0.6636 2.8097 11 7 2.4641 2.6402 3.5437 12 6 2.9499 4.0170 3.3707 13 6 3.1334 4.6186 4.7799 14 6 2.2030 3.7395 5.6569 15 1 1.1707 4.0846 5.5998 16 7 2.6684 3.7074 7.0499 17 6 1.8800 2.7575 7.8464 18 6 2.5074 2.6187 9.2376 19 7 2.6432 3.9603 9.8248 20 6 2.1683 4.2291 11.0808 21 1 1.8347 5.2256 11.3301 22 6 2.1158 3.2209 12.0335 23 7 2.7504 2.0865 11.8268 24 14 1.1445 3.4742 13.6089 25 1 -0.2804 3.7283 13.2765 26 1 1.2457 2.2573 14.4539 27 1 1.6955 4.6382 14.3483 28 6 3.3022 5.0056 9.0272 29 6 2.6436 5.0504 7.6443 30 6 2.3632 2.3521 4.9860 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5139 0.8898 33 1 -0.3633 0.5138 -0.8901 34 1 1.8933 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 3.0294 4.2745 1.3155 37 1 3.9039 4.0100 2.8435 38 1 2.2202 4.5997 2.8085 39 1 2.8114 5.6598 4.7997 40 1 4.1695 4.5280 5.1059 41 1 0.8581 3.1242 7.9432 42 1 1.8731 1.7862 7.3519 43 1 3.4904 2.1554 9.1514 44 1 1.8648 2.0057 9.8695 45 1 2.7134 1.3818 12.4924 46 1 4.3615 4.7718 8.9208 47 1 3.1851 5.9707 9.5200 48 1 3.1904 5.7420 7.0033 49 1 1.6111 5.3855 7.7434 50 1 3.2704 1.8621 5.3393 51 1 1.4914 1.7299 5.1885 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052048392.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:15:12 Heat of formation + Delta-G solvation = 57.548902 kcal Electronic energy + Delta-G solvation = -31069.214694 eV Core-core repulsion = 27005.156173 eV Total energy + Delta-G solvation = -4064.058521 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.53529 -40.89153 -39.58001 -38.04527 -35.86674 -35.14778 -33.43966 -32.19425 -31.81946 -31.34755 -30.89877 -29.51720 -27.63031 -25.54626 -25.03331 -24.58176 -24.11564 -22.57736 -21.80413 -21.20315 -20.77717 -20.34719 -18.79497 -18.48884 -17.74905 -17.50518 -16.77505 -16.45231 -16.21873 -15.73755 -15.70277 -15.51749 -15.34181 -15.25796 -15.06485 -14.98618 -14.80824 -14.54524 -14.10806 -13.89003 -13.73573 -13.50828 -13.30662 -13.11393 -13.03100 -12.65461 -12.55093 -12.52683 -12.32236 -12.25175 -12.11436 -11.99555 -11.86519 -11.80218 -11.71474 -11.40288 -11.34157 -10.88515 -10.57797 -10.57015 -9.94775 -9.58373 -9.28484 -8.62892 -7.85901 -5.34326 0.52001 1.05230 1.46774 1.49160 1.55856 1.70578 2.03107 2.39292 2.51244 3.00240 3.30364 3.33630 3.51924 3.66257 3.69743 3.72943 4.09468 4.11764 4.14126 4.24714 4.32846 4.34911 4.37875 4.43737 4.44884 4.49167 4.58911 4.60003 4.66419 4.67442 4.73847 4.79213 4.91269 4.94760 5.02345 5.03204 5.12086 5.13980 5.21801 5.25185 5.27427 5.33804 5.40938 5.42060 5.62493 5.70579 6.15902 6.25426 6.28912 6.40245 6.46570 6.60556 7.15257 7.21541 7.85818 8.40405 9.20396 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.023068 B = 0.002120 C = 0.001987 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.533777 B =13205.330170 C =14088.825118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.051 4.051 3 C 0.124 3.876 4 N -0.321 5.321 5 N -0.445 5.445 6 H 0.462 0.538 7 C 0.125 3.875 8 C -0.314 4.314 9 C 0.601 3.399 10 O -0.584 6.584 11 N -0.614 5.614 12 C 0.089 3.911 13 C -0.114 4.114 14 C 0.070 3.930 15 H 0.052 0.948 16 N -0.526 5.526 17 C 0.051 3.949 18 C 0.188 3.812 19 N -0.615 5.615 20 C -0.263 4.263 21 H 0.068 0.932 22 C -0.053 4.053 23 N -0.937 5.937 24 Si 0.969 3.031 25 H -0.279 1.279 26 H -0.295 1.295 27 H -0.273 1.273 28 C 0.143 3.857 29 C 0.058 3.942 30 C 0.122 3.878 31 H 0.074 0.926 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.087 0.913 35 H 0.081 0.919 36 H 0.237 0.763 37 H 0.101 0.899 38 H 0.100 0.900 39 H 0.110 0.890 40 H 0.089 0.911 41 H 0.018 0.982 42 H 0.071 0.929 43 H -0.002 1.002 44 H 0.052 0.948 45 H 0.250 0.750 46 H 0.018 0.982 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.023 0.977 50 H 0.065 0.935 51 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.535 8.378 -27.715 28.958 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.090 4.090 3 C -0.044 4.044 4 N -0.144 5.144 5 N -0.151 5.151 6 H 0.311 0.689 7 C -0.029 4.029 8 C -0.329 4.329 9 C 0.392 3.608 10 O -0.465 6.465 11 N -0.348 5.348 12 C -0.033 4.033 13 C -0.152 4.152 14 C -0.039 4.039 15 H 0.070 0.930 16 N -0.251 5.251 17 C -0.079 4.079 18 C 0.062 3.938 19 N -0.340 5.340 20 C -0.393 4.393 21 H 0.086 0.914 22 C -0.248 4.248 23 N -0.583 5.583 24 Si 0.797 3.203 25 H -0.205 1.205 26 H -0.222 1.222 27 H -0.199 1.199 28 C 0.017 3.983 29 C -0.071 4.071 30 C -0.001 4.001 31 H 0.093 0.907 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.106 0.894 35 H 0.100 0.900 36 H 0.253 0.747 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.128 0.872 40 H 0.108 0.892 41 H 0.036 0.964 42 H 0.090 0.910 43 H 0.016 0.984 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.125 0.875 49 H 0.041 0.959 50 H 0.083 0.917 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 0.835 7.513 -28.826 29.800 hybrid contribution -1.106 0.036 2.089 2.364 sum -0.271 7.549 -26.736 27.783 Atomic orbital electron populations 1.21549 0.93515 1.02728 1.01141 1.20101 0.96950 0.88266 1.03706 1.22592 0.95281 0.97371 0.89155 1.77101 1.22635 0.92123 1.22513 1.46194 1.50157 1.12779 1.06017 0.68906 1.24389 0.94101 0.98715 0.85663 1.20155 1.22408 0.97378 0.92919 1.17237 0.76287 0.83349 0.83879 1.90734 1.49466 1.21705 1.84598 1.48228 1.65942 1.15251 1.05340 1.22686 1.01004 0.80823 0.98764 1.22748 1.00853 0.99846 0.91746 1.22761 0.97807 0.95098 0.88221 0.93028 1.61927 1.53794 1.08541 1.00873 1.22563 0.94177 0.95837 0.95288 1.20556 0.96468 0.86819 0.89920 1.44374 1.67170 1.07926 1.14490 1.19487 1.34776 0.96635 0.88398 0.91411 1.25896 1.00621 0.97491 1.00793 1.70158 1.44863 1.06984 1.36324 0.85318 0.78773 0.76752 0.79442 1.20489 1.22168 1.19875 1.21176 0.94336 0.91945 0.90835 1.22483 0.99002 0.89445 0.96133 1.22005 1.01232 0.97100 0.79806 0.90671 0.94190 0.92332 0.89411 0.90036 0.74728 0.88120 0.88167 0.87177 0.89222 0.96411 0.91045 0.98378 0.92954 0.94142 0.96419 0.91989 0.87460 0.95917 0.91676 0.92773 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.59 9.89 71.98 0.71 -1.88 16 2 C -0.05 -1.09 5.97 29.85 0.18 -0.92 16 3 C 0.12 2.72 6.52 43.51 0.28 3.00 16 4 N -0.32 -6.14 12.63 -46.68 -0.59 -6.73 16 5 N -0.45 -4.54 7.29 -56.31 -0.41 -4.95 16 6 H 0.46 0.88 8.96 -213.44 -1.91 -1.03 16 7 C 0.13 1.28 10.49 84.27 0.88 2.17 16 8 C -0.31 -6.36 6.10 -20.15 -0.12 -6.49 16 9 C 0.60 15.71 7.85 86.67 0.68 16.39 16 10 O -0.58 -20.13 15.17 -4.02 -0.06 -20.19 16 11 N -0.61 -13.22 3.33 -815.60 -2.71 -15.93 16 12 C 0.09 0.95 4.99 86.73 0.43 1.38 16 13 C -0.11 -1.55 5.34 31.78 0.17 -1.38 16 14 C 0.07 1.65 2.72 46.32 0.13 1.77 16 15 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 16 N -0.53 -16.51 4.53 -861.82 -3.90 -20.42 16 17 C 0.05 1.97 5.48 86.38 0.47 2.44 16 18 C 0.19 9.37 5.38 86.35 0.46 9.84 16 19 N -0.62 -31.16 3.03 -698.12 -2.11 -33.27 16 20 C -0.26 -14.50 9.62 84.03 0.81 -13.69 16 21 H 0.07 3.60 7.86 -2.91 -0.02 3.58 16 22 C -0.05 -2.98 5.01 84.86 0.43 -2.55 16 23 N -0.94 -56.40 11.11 21.65 0.24 -56.16 16 24 Si 0.97 45.18 29.57 68.60 2.03 47.21 16 25 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 26 H -0.30 -13.91 7.11 99.48 0.71 -13.20 16 27 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 28 C 0.14 5.69 6.69 86.35 0.58 6.27 16 29 C 0.06 1.77 5.48 86.38 0.47 2.24 16 30 C 0.12 3.23 5.31 86.87 0.46 3.69 16 31 H 0.07 1.26 8.14 -2.38 -0.02 1.24 16 32 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 33 H 0.06 1.05 8.14 -2.38 -0.02 1.03 16 34 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 35 H 0.08 2.08 6.55 -2.38 -0.02 2.07 16 36 H 0.24 0.24 4.42 -2.91 -0.01 0.22 16 37 H 0.10 0.57 7.03 -2.38 -0.02 0.55 16 38 H 0.10 0.50 6.82 -2.39 -0.02 0.49 16 39 H 0.11 0.94 7.94 -2.38 -0.02 0.92 16 40 H 0.09 1.34 8.14 -2.39 -0.02 1.33 16 41 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.07 2.62 6.79 -2.39 -0.02 2.60 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.05 2.95 6.20 -2.39 -0.01 2.93 16 45 H 0.25 14.60 8.31 -92.71 -0.77 13.83 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.35 7.95 -2.39 -0.02 2.33 16 48 H 0.11 2.35 6.87 -2.39 -0.02 2.34 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 51 H 0.05 1.67 7.74 -2.38 -0.02 1.65 16 Total: -1.00 -79.62 393.83 -1.46 -81.08 By element: Atomic # 1 Polarization: 8.04 SS G_CDS: -0.96 Total: 7.07 kcal Atomic # 6 Polarization: 15.26 SS G_CDS: 7.03 Total: 22.29 kcal Atomic # 7 Polarization: -127.97 SS G_CDS: -9.49 Total: -137.46 kcal Atomic # 8 Polarization: -20.13 SS G_CDS: -0.06 Total: -20.19 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -79.62 -1.46 -81.08 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052048392.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.630 kcal (2) G-P(sol) polarization free energy of solvation -79.624 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 59.007 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.458 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.082 kcal (6) G-S(sol) free energy of system = (1) + (5) 57.549 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds