Wall clock time and date at job start Wed Apr 1 2020 05:03:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34662 * 126.58813 * 2 1 4 4 N 1.34126 * 108.01945 * 180.02562 * 3 2 1 5 5 C 1.30496 * 109.25696 * 359.73136 * 4 3 2 6 6 N 1.35047 * 108.69592 * 0.43642 * 5 4 3 7 7 C 1.46499 * 126.39390 * 179.82507 * 6 5 4 8 8 C 1.50700 * 109.47569 * 264.69189 * 7 6 5 9 9 O 1.21280 * 119.99559 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.47024 * 125.64626 * 359.96212 * 10 8 7 12 12 C 1.54323 * 107.26885 * 181.09493 * 11 10 8 13 13 C 1.55153 * 102.94572 * 22.19260 * 12 11 10 14 14 H 1.09000 * 111.00908 * 82.57267 * 13 12 11 15 15 N 1.46899 * 111.03856 * 206.41333 * 13 12 11 16 16 C 1.46896 * 110.99954 * 296.23955 * 15 13 12 17 17 C 1.53235 * 109.34301 * 172.74836 * 16 15 13 18 18 N 1.47080 * 108.52489 * 53.82841 * 17 16 15 19 19 C 1.36937 * 120.88496 * 128.79382 * 18 17 16 20 20 H 1.08003 * 119.99845 * 208.80026 * 19 18 17 21 21 C 1.38809 * 119.99970 * 28.79834 * 19 18 17 22 22 N 1.31626 * 119.99708 * 14.68954 * 21 19 18 23 23 Si 1.86797 * 120.00138 * 194.69214 * 21 19 18 24 24 H 1.48498 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47171 * 120.00119 * 23 21 19 26 26 H 1.48504 * 109.46909 * 239.99862 * 23 21 19 27 27 C 1.47088 * 118.23227 * 308.81872 * 18 17 16 28 28 C 1.46901 * 111.00021 * 171.93633 * 15 13 12 29 29 C 1.47423 * 125.65185 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47422 * 269.95768 * 1 2 3 31 31 H 1.09001 * 109.47464 * 29.96152 * 1 2 3 32 32 H 1.09006 * 109.46783 * 149.95532 * 1 2 3 33 33 H 1.08006 * 125.99604 * 0.03704 * 3 2 1 34 34 H 1.08002 * 125.65493 * 180.29361 * 5 4 3 35 35 H 1.09004 * 109.46929 * 144.68761 * 7 6 5 36 36 H 1.09002 * 109.47025 * 24.69766 * 7 6 5 37 37 H 1.08995 * 109.88691 * 61.67850 * 11 10 8 38 38 H 1.09005 * 110.00852 * 300.58049 * 11 10 8 39 39 H 1.09002 * 110.71828 * 263.82517 * 12 11 10 40 40 H 1.09001 * 110.87210 * 140.62723 * 12 11 10 41 41 H 1.09002 * 109.48983 * 292.70745 * 16 15 13 42 42 H 1.08996 * 109.49781 * 52.78191 * 16 15 13 43 43 H 1.09001 * 109.63062 * 294.11529 * 17 16 15 44 44 H 1.09003 * 109.62863 * 173.53852 * 17 16 15 45 45 H 0.96999 * 119.99396 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.62483 * 291.46933 * 27 18 17 47 47 H 1.09000 * 109.62490 * 170.89654 * 27 18 17 48 48 H 1.09002 * 109.49345 * 307.21042 * 28 15 13 49 49 H 1.08994 * 109.49140 * 67.26517 * 28 15 13 50 50 H 1.09002 * 110.36356 * 36.99522 * 29 10 8 51 51 H 1.08998 * 110.36576 * 274.67883 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6541 -0.0006 5 6 3.5968 -0.6507 0.0049 6 7 2.3229 -1.0990 -0.0007 7 6 1.8944 -2.4999 -0.0010 8 6 1.6285 -2.9436 -1.4164 9 8 1.7823 -2.1663 -2.3346 10 7 1.2198 -4.2042 -1.6620 11 6 0.9949 -5.2449 -0.6481 12 6 0.5634 -6.5253 -1.3937 13 6 1.1155 -6.2965 -2.8255 14 1 2.1696 -6.5676 -2.8858 15 7 0.3267 -7.0367 -3.8194 16 6 0.4319 -8.4856 -3.6018 17 6 -0.5412 -9.2113 -4.5371 18 7 -0.2820 -8.7689 -5.9156 19 6 -0.0886 -9.6783 -6.9210 20 1 0.5294 -9.4226 -7.7690 21 6 -0.6870 -10.9288 -6.8503 22 7 -1.6570 -11.1464 -5.9875 23 14 -0.1158 -12.3029 -7.9794 24 1 0.9793 -11.8050 -8.8501 25 1 0.3784 -13.4409 -7.1635 26 1 -1.2514 -12.7548 -8.8228 27 6 -0.2354 -7.3238 -6.1855 28 6 0.7258 -6.6725 -5.1854 29 6 0.9243 -4.7681 -2.9917 30 1 -0.3634 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5146 33 1 1.9864 2.1118 0.0006 34 1 4.4819 -1.2696 0.0103 35 1 0.9834 -2.6013 0.5888 36 1 2.6789 -3.1199 0.4329 37 1 0.2070 -4.9313 0.0367 38 1 1.9151 -5.4308 -0.0940 39 1 -0.5228 -6.6151 -1.4089 40 1 1.0157 -7.4085 -0.9425 41 1 1.4504 -8.8120 -3.8124 42 1 0.1823 -8.7172 -2.5664 43 1 -1.5666 -8.9659 -4.2605 44 1 -0.3865 -10.2877 -4.4627 45 1 -2.0749 -12.0203 -5.9378 46 1 -1.2314 -6.8970 -6.0674 47 1 0.1214 -7.1524 -7.2011 48 1 0.6891 -5.5890 -5.2984 49 1 1.7403 -7.0237 -5.3738 50 1 1.6213 -4.3769 -3.7329 51 1 -0.1026 -4.5430 -3.2795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052052642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:37 Heat of formation + Delta-G solvation = 75.487749 kcal Electronic energy + Delta-G solvation = -30812.145973 eV Core-core repulsion = 26748.865339 eV Total energy + Delta-G solvation = -4063.280634 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -42.41503 -40.39725 -38.65440 -36.96550 -34.43182 -34.20692 -32.24018 -31.83779 -30.53059 -30.33761 -29.09970 -27.76479 -26.68353 -25.89302 -23.94897 -22.92583 -22.33673 -21.71630 -20.82093 -20.41664 -19.45809 -19.22975 -17.88092 -17.40317 -17.17765 -16.45547 -15.88569 -15.43425 -15.09413 -14.88317 -14.45482 -14.34273 -14.17598 -14.13002 -13.90626 -13.57478 -13.45348 -13.31143 -13.28978 -13.15829 -13.02326 -12.87763 -12.68353 -12.52687 -12.49774 -11.98015 -11.40850 -11.33050 -11.11167 -11.04202 -10.81254 -10.65048 -10.48792 -10.35905 -10.17998 -10.11492 -9.82042 -9.75138 -9.64716 -9.02866 -8.57290 -8.51463 -8.00733 -6.69648 -5.83686 -3.27423 1.64258 2.10495 2.23329 2.70705 2.98535 3.32792 3.41020 3.43017 3.87379 4.07874 4.12961 4.37323 4.39747 4.44024 4.45475 4.47989 4.49028 4.75094 4.85137 5.03581 5.13143 5.16671 5.20078 5.22081 5.34715 5.37158 5.49918 5.54707 5.56252 5.66932 5.71606 5.76001 5.80958 5.85597 6.04558 6.06385 6.08343 6.14556 6.24585 6.45375 6.51289 6.60881 6.85385 6.86535 7.06161 7.15542 7.45158 7.53954 7.61273 7.67104 7.75920 7.84604 8.39344 9.16408 9.78565 10.37742 11.25199 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.001875 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.271517 B =14926.721964 C =15139.790379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.014 4.014 3 C -0.029 4.029 4 N -0.491 5.491 5 C 0.188 3.812 6 N -0.444 5.444 7 C 0.091 3.909 8 C 0.509 3.491 9 O -0.519 6.519 10 N -0.614 5.614 11 C 0.097 3.903 12 C -0.123 4.123 13 C 0.069 3.931 14 H 0.051 0.949 15 N -0.520 5.520 16 C 0.036 3.964 17 C 0.179 3.821 18 N -0.595 5.595 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.117 3.883 30 H 0.072 0.928 31 H 0.083 0.917 32 H 0.062 0.938 33 H 0.169 0.831 34 H 0.203 0.797 35 H 0.120 0.880 36 H 0.124 0.876 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.092 0.908 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.253 0.747 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.029 0.971 50 H 0.076 0.924 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.042 15.175 17.891 23.996 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.127 4.127 3 C -0.176 4.176 4 N -0.208 5.208 5 C -0.093 4.093 6 N -0.128 5.128 7 C -0.036 4.036 8 C 0.295 3.705 9 O -0.394 6.394 10 N -0.349 5.349 11 C -0.026 4.026 12 C -0.161 4.161 13 C -0.041 4.041 14 H 0.069 0.931 15 N -0.246 5.246 16 C -0.093 4.093 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.022 3.978 28 C -0.088 4.088 29 C -0.005 4.005 30 H 0.091 0.909 31 H 0.102 0.898 32 H 0.080 0.920 33 H 0.186 0.814 34 H 0.219 0.781 35 H 0.137 0.863 36 H 0.142 0.858 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.111 0.889 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.106 0.894 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.095 0.905 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 5.225 16.033 17.454 24.269 hybrid contribution 0.439 -1.749 -0.656 1.919 sum 5.663 14.283 16.798 22.765 Atomic orbital electron populations 1.20219 0.87300 1.03653 1.02364 1.21230 0.94551 0.86665 1.10291 1.22013 0.88362 0.98376 1.08876 1.70257 1.22469 1.08721 1.19355 1.24878 0.86858 0.91878 1.05735 1.44883 1.07539 1.05228 1.55154 1.21615 1.04536 0.81522 0.95914 1.20313 0.78009 0.81005 0.91146 1.90817 1.51071 1.51803 1.45703 1.48429 1.66473 1.10381 1.09626 1.22177 1.00901 0.88115 0.91392 1.22690 1.03232 0.95872 0.94312 1.22746 0.95924 0.92532 0.92902 0.93105 1.62034 1.53233 1.07147 1.02166 1.22928 1.00020 0.86019 1.00303 1.20845 0.93879 0.98155 0.81789 1.44106 1.83699 0.99534 1.04519 1.19223 1.23403 0.94188 1.01349 0.91693 1.25093 0.96096 0.99561 0.98890 1.70017 1.23925 1.22243 1.38636 0.86212 0.78096 0.82234 0.80168 1.20292 1.21579 1.21647 1.20980 0.95780 0.85907 0.95115 1.22684 0.98340 0.98904 0.88887 1.22295 1.02150 0.92393 0.83704 0.90931 0.89788 0.91951 0.81424 0.78061 0.86255 0.85791 0.90901 0.91166 0.88940 0.89846 0.95622 0.91900 0.95470 0.89449 0.93648 0.95578 0.92527 0.91890 0.95264 0.90530 0.89891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.55 10.08 36.01 0.36 -0.19 16 2 C -0.01 -0.14 6.95 -81.61 -0.57 -0.71 16 3 C -0.03 -0.33 11.79 -17.82 -0.21 -0.54 16 4 N -0.49 -6.28 11.25 -14.67 -0.16 -6.45 16 5 C 0.19 1.96 12.56 -90.38 -1.13 0.82 16 6 N -0.44 -4.23 2.24 -115.27 -0.26 -4.49 16 7 C 0.09 0.60 5.47 -5.19 -0.03 0.57 16 8 C 0.51 5.33 7.92 -10.99 -0.09 5.24 16 9 O -0.52 -7.96 16.68 5.56 0.09 -7.87 16 10 N -0.61 -5.86 3.33 -170.51 -0.57 -6.43 16 11 C 0.10 0.63 6.49 -3.06 -0.02 0.61 16 12 C -0.12 -1.09 5.43 -24.90 -0.14 -1.23 16 13 C 0.07 0.83 2.71 -65.55 -0.18 0.65 16 14 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 15 N -0.52 -8.20 4.53 -223.78 -1.01 -9.21 16 16 C 0.04 0.64 5.49 -3.70 -0.02 0.62 16 17 C 0.18 4.09 5.39 -3.60 -0.02 4.07 16 18 N -0.60 -14.58 3.03 -172.01 -0.52 -15.10 16 19 C -0.25 -6.79 9.62 -15.06 -0.14 -6.93 16 20 H 0.07 1.73 7.87 -52.48 -0.41 1.32 16 21 C 0.00 0.06 4.98 -17.43 -0.09 -0.03 16 22 N -0.90 -25.61 11.17 55.49 0.62 -24.99 16 23 Si 0.90 21.30 29.58 -169.99 -5.03 16.27 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 27 C 0.15 3.07 6.69 -3.60 -0.02 3.04 16 28 C 0.04 0.70 5.46 -3.70 -0.02 0.68 16 29 C 0.12 1.38 5.23 -2.52 -0.01 1.37 16 30 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 31 H 0.08 0.54 8.14 -51.93 -0.42 0.11 16 32 H 0.06 0.48 7.96 -51.93 -0.41 0.07 16 33 H 0.17 1.50 8.06 -52.48 -0.42 1.08 16 34 H 0.20 1.40 8.06 -52.49 -0.42 0.97 16 35 H 0.12 0.50 8.02 -51.93 -0.42 0.08 16 36 H 0.12 0.43 8.13 -51.93 -0.42 0.01 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.09 16 38 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.95 6.93 -51.93 -0.36 0.59 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.24 16 44 H 0.09 2.23 6.22 -51.93 -0.32 1.90 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.13 16 47 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 48 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 50 H 0.08 1.01 7.74 -51.93 -0.40 0.61 16 51 H 0.08 1.07 8.14 -51.93 -0.42 0.65 16 LS Contribution 404.86 15.07 6.10 6.10 Total: -1.00 -34.92 404.86 -11.62 -46.54 By element: Atomic # 1 Polarization: 6.15 SS G_CDS: -8.56 Total: -2.41 kcal Atomic # 6 Polarization: 10.37 SS G_CDS: -2.33 Total: 8.04 kcal Atomic # 7 Polarization: -64.76 SS G_CDS: -1.90 Total: -66.67 kcal Atomic # 8 Polarization: -7.96 SS G_CDS: 0.09 Total: -7.87 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.92 -11.62 -46.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052052642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.024 kcal (2) G-P(sol) polarization free energy of solvation -34.916 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.537 kcal (6) G-S(sol) free energy of system = (1) + (5) 75.488 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.62 seconds