Wall clock time and date at job start Wed Apr 1 2020 05:03:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.34662 * 126.58813 * 2 1 4 4 N 1.34126 * 108.01945 * 180.02562 * 3 2 1 5 5 C 1.30496 * 109.25696 * 359.73136 * 4 3 2 6 6 N 1.35047 * 108.69592 * 0.43642 * 5 4 3 7 7 C 1.46499 * 126.39390 * 179.82507 * 6 5 4 8 8 C 1.50700 * 109.47569 * 264.69189 * 7 6 5 9 9 O 1.21280 * 119.99559 * 0.02562 * 8 7 6 10 10 N 1.34773 * 120.00284 * 180.02562 * 8 7 6 11 11 C 1.47024 * 125.64626 * 359.96212 * 10 8 7 12 12 C 1.54323 * 107.26885 * 181.09493 * 11 10 8 13 13 C 1.55153 * 102.94572 * 22.19260 * 12 11 10 14 14 H 1.09000 * 111.00908 * 82.57267 * 13 12 11 15 15 N 1.46899 * 111.03856 * 206.41333 * 13 12 11 16 16 C 1.46896 * 110.99954 * 296.23955 * 15 13 12 17 17 C 1.53235 * 109.34301 * 172.74836 * 16 15 13 18 18 N 1.47080 * 108.52489 * 53.82841 * 17 16 15 19 19 C 1.36937 * 120.88496 * 128.79382 * 18 17 16 20 20 H 1.08003 * 119.99845 * 208.80026 * 19 18 17 21 21 C 1.38809 * 119.99970 * 28.79834 * 19 18 17 22 22 N 1.31626 * 119.99708 * 14.68954 * 21 19 18 23 23 Si 1.86797 * 120.00138 * 194.69214 * 21 19 18 24 24 H 1.48498 * 109.47054 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47171 * 120.00119 * 23 21 19 26 26 H 1.48504 * 109.46909 * 239.99862 * 23 21 19 27 27 C 1.47088 * 118.23227 * 308.81872 * 18 17 16 28 28 C 1.46901 * 111.00021 * 171.93633 * 15 13 12 29 29 C 1.47423 * 125.65185 * 179.97438 * 10 8 7 30 30 H 1.09002 * 109.47422 * 269.95768 * 1 2 3 31 31 H 1.09001 * 109.47464 * 29.96152 * 1 2 3 32 32 H 1.09006 * 109.46783 * 149.95532 * 1 2 3 33 33 H 1.08006 * 125.99604 * 0.03704 * 3 2 1 34 34 H 1.08002 * 125.65493 * 180.29361 * 5 4 3 35 35 H 1.09004 * 109.46929 * 144.68761 * 7 6 5 36 36 H 1.09002 * 109.47025 * 24.69766 * 7 6 5 37 37 H 1.08995 * 109.88691 * 61.67850 * 11 10 8 38 38 H 1.09005 * 110.00852 * 300.58049 * 11 10 8 39 39 H 1.09002 * 110.71828 * 263.82517 * 12 11 10 40 40 H 1.09001 * 110.87210 * 140.62723 * 12 11 10 41 41 H 1.09002 * 109.48983 * 292.70745 * 16 15 13 42 42 H 1.08996 * 109.49781 * 52.78191 * 16 15 13 43 43 H 1.09001 * 109.63062 * 294.11529 * 17 16 15 44 44 H 1.09003 * 109.62863 * 173.53852 * 17 16 15 45 45 H 0.96999 * 119.99396 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.62483 * 291.46933 * 27 18 17 47 47 H 1.09000 * 109.62490 * 170.89654 * 27 18 17 48 48 H 1.09002 * 109.49345 * 307.21042 * 28 15 13 49 49 H 1.08994 * 109.49140 * 67.26517 * 28 15 13 50 50 H 1.09002 * 110.36356 * 36.99522 * 29 10 8 51 51 H 1.08998 * 110.36576 * 274.67883 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3097 1.0813 0.0000 4 7 3.5811 0.6541 -0.0006 5 6 3.5968 -0.6507 0.0049 6 7 2.3229 -1.0990 -0.0007 7 6 1.8944 -2.4999 -0.0010 8 6 1.6285 -2.9436 -1.4164 9 8 1.7823 -2.1663 -2.3346 10 7 1.2198 -4.2042 -1.6620 11 6 0.9949 -5.2449 -0.6481 12 6 0.5634 -6.5253 -1.3937 13 6 1.1155 -6.2965 -2.8255 14 1 2.1696 -6.5676 -2.8858 15 7 0.3267 -7.0367 -3.8194 16 6 0.4319 -8.4856 -3.6018 17 6 -0.5412 -9.2113 -4.5371 18 7 -0.2820 -8.7689 -5.9156 19 6 -0.0886 -9.6783 -6.9210 20 1 0.5294 -9.4226 -7.7690 21 6 -0.6870 -10.9288 -6.8503 22 7 -1.6570 -11.1464 -5.9875 23 14 -0.1158 -12.3029 -7.9794 24 1 0.9793 -11.8050 -8.8501 25 1 0.3784 -13.4409 -7.1635 26 1 -1.2514 -12.7548 -8.8228 27 6 -0.2354 -7.3238 -6.1855 28 6 0.7258 -6.6725 -5.1854 29 6 0.9243 -4.7681 -2.9917 30 1 -0.3634 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5132 32 1 -0.3633 -0.8896 -0.5146 33 1 1.9864 2.1118 0.0006 34 1 4.4819 -1.2696 0.0103 35 1 0.9834 -2.6013 0.5888 36 1 2.6789 -3.1199 0.4329 37 1 0.2070 -4.9313 0.0367 38 1 1.9151 -5.4308 -0.0940 39 1 -0.5228 -6.6151 -1.4089 40 1 1.0157 -7.4085 -0.9425 41 1 1.4504 -8.8120 -3.8124 42 1 0.1823 -8.7172 -2.5664 43 1 -1.5666 -8.9659 -4.2605 44 1 -0.3865 -10.2877 -4.4627 45 1 -2.0749 -12.0203 -5.9378 46 1 -1.2314 -6.8970 -6.0674 47 1 0.1214 -7.1524 -7.2011 48 1 0.6891 -5.5890 -5.2984 49 1 1.7403 -7.0237 -5.3738 50 1 1.6213 -4.3769 -3.7329 51 1 -0.1026 -4.5430 -3.2795 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052052642.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:03:36 Heat of formation + Delta-G solvation = 52.971697 kcal Electronic energy + Delta-G solvation = -30813.122343 eV Core-core repulsion = 26748.865339 eV Total energy + Delta-G solvation = -4064.257004 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -43.11445 -41.24255 -39.84535 -38.16559 -35.85855 -35.05068 -33.44965 -32.84962 -31.84630 -31.71431 -30.03502 -28.78909 -27.38078 -27.32817 -25.14151 -24.47981 -23.62264 -22.44214 -21.72554 -21.33208 -20.82628 -20.15187 -18.86225 -18.55542 -18.08164 -17.59980 -16.88705 -16.65068 -16.28678 -15.90673 -15.60205 -15.51499 -15.26690 -15.22272 -15.16360 -14.90003 -14.65271 -14.56657 -14.09730 -13.92585 -13.84124 -13.68555 -13.58940 -13.34293 -13.25910 -13.17575 -12.99229 -12.72181 -12.58082 -12.52371 -12.17336 -12.02581 -11.89909 -11.81691 -11.53405 -11.44691 -11.35314 -10.95269 -10.61416 -10.49200 -9.79228 -9.34010 -9.23647 -8.66685 -7.89249 -5.36325 0.92860 1.37804 1.44685 1.46674 1.56948 1.59894 2.01640 2.21235 2.48990 2.93061 3.21694 3.26787 3.61507 3.64519 3.68306 3.73246 3.79612 3.87799 4.06071 4.08488 4.19318 4.25202 4.30456 4.32291 4.36663 4.51641 4.54026 4.57561 4.63428 4.67444 4.72814 4.78225 4.83296 4.86635 4.88922 4.98486 5.01467 5.02620 5.13401 5.17986 5.26661 5.36034 5.39787 5.60530 5.69948 5.80850 6.10244 6.18790 6.23002 6.37207 6.38976 6.92639 7.10893 7.13249 7.82283 8.36792 9.17355 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031585 B = 0.001875 C = 0.001849 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 886.271517 B =14926.721964 C =15139.790379 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C -0.017 4.017 3 C -0.061 4.061 4 N -0.533 5.533 5 C 0.181 3.819 6 N -0.446 5.446 7 C 0.095 3.905 8 C 0.508 3.492 9 O -0.578 6.578 10 N -0.610 5.610 11 C 0.098 3.902 12 C -0.119 4.119 13 C 0.070 3.930 14 H 0.052 0.948 15 N -0.527 5.527 16 C 0.055 3.945 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.264 4.264 20 H 0.063 0.937 21 C -0.049 4.049 22 N -0.933 5.933 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.292 1.292 27 C 0.145 3.855 28 C 0.055 3.945 29 C 0.122 3.878 30 H 0.096 0.904 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.177 0.823 34 H 0.230 0.770 35 H 0.152 0.848 36 H 0.165 0.835 37 H 0.103 0.897 38 H 0.104 0.896 39 H 0.083 0.917 40 H 0.100 0.900 41 H 0.018 0.982 42 H 0.093 0.907 43 H 0.001 0.999 44 H 0.056 0.944 45 H 0.251 0.749 46 H 0.016 0.984 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.022 0.978 50 H 0.057 0.943 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.826 15.012 20.452 26.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C -0.132 4.132 3 C -0.207 4.207 4 N -0.251 5.251 5 C -0.101 4.101 6 N -0.130 5.130 7 C -0.030 4.030 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.344 5.344 11 C -0.023 4.023 12 C -0.157 4.157 13 C -0.040 4.040 14 H 0.070 0.930 15 N -0.252 5.252 16 C -0.074 4.074 17 C 0.060 3.940 18 N -0.339 5.339 19 C -0.395 4.395 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.796 3.204 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.219 1.219 27 C 0.019 3.981 28 C -0.075 4.075 29 C -0.002 4.002 30 H 0.115 0.885 31 H 0.105 0.895 32 H 0.077 0.923 33 H 0.194 0.806 34 H 0.246 0.754 35 H 0.170 0.830 36 H 0.182 0.818 37 H 0.121 0.879 38 H 0.122 0.878 39 H 0.102 0.898 40 H 0.119 0.881 41 H 0.037 0.963 42 H 0.112 0.888 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.040 0.960 50 H 0.075 0.925 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 6.010 15.869 20.053 26.269 hybrid contribution 0.150 -1.658 -1.493 2.236 sum 6.159 14.211 18.560 24.174 Atomic orbital electron populations 1.20286 0.85396 1.03598 1.03850 1.21670 0.95802 0.86681 1.09022 1.22345 0.88502 0.99543 1.10276 1.70197 1.23545 1.10428 1.20953 1.25449 0.88157 0.91677 1.04827 1.45055 1.07148 1.06304 1.54473 1.21938 1.07453 0.80267 0.93355 1.21016 0.76714 0.80418 0.92230 1.90801 1.53707 1.53425 1.47829 1.48467 1.65731 1.10887 1.09295 1.22438 1.03667 0.85676 0.90555 1.22718 1.02745 0.98148 0.92122 1.22766 0.95557 0.91930 0.93701 0.92992 1.61932 1.54592 1.06299 1.02371 1.22572 0.97761 0.86696 1.00324 1.20640 0.93922 0.97085 0.82403 1.44392 1.83865 1.00794 1.04833 1.19509 1.23053 0.95061 1.01840 0.91946 1.25826 0.96359 1.01635 1.00596 1.70167 1.25058 1.22468 1.40216 0.85204 0.77548 0.79291 0.78360 1.19412 1.21338 1.21913 1.21093 0.96269 0.84219 0.96514 1.22441 0.96524 0.99576 0.88914 1.22031 1.00792 0.92308 0.85039 0.88538 0.89486 0.92344 0.80628 0.75363 0.83030 0.81788 0.87883 0.87758 0.89793 0.88137 0.96338 0.88838 0.98091 0.92566 0.93975 0.96578 0.92613 0.89801 0.95956 0.92471 0.91293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.90 10.08 71.24 0.72 -0.18 16 2 C -0.02 -0.32 6.95 40.95 0.28 -0.04 16 3 C -0.06 -1.36 11.79 83.52 0.98 -0.38 16 4 N -0.53 -13.53 11.25 -200.31 -2.25 -15.78 16 5 C 0.18 3.48 12.56 180.26 2.26 5.74 16 6 N -0.45 -7.42 2.24 -518.62 -1.16 -8.58 16 7 C 0.10 0.84 5.47 85.63 0.47 1.31 16 8 C 0.51 9.24 7.92 87.66 0.69 9.94 16 9 O -0.58 -17.34 16.68 -3.03 -0.05 -17.39 16 10 N -0.61 -9.66 3.33 -811.75 -2.70 -12.36 16 11 C 0.10 0.75 6.49 86.73 0.56 1.31 16 12 C -0.12 -1.64 5.43 31.78 0.17 -1.47 16 13 C 0.07 1.51 2.71 46.31 0.13 1.64 16 14 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 15 N -0.53 -16.01 4.53 -861.89 -3.90 -19.91 16 16 C 0.06 1.90 5.49 86.38 0.47 2.37 16 17 C 0.19 8.66 5.39 86.35 0.47 9.12 16 18 N -0.61 -30.86 3.03 -698.11 -2.11 -32.97 16 19 C -0.26 -14.54 9.62 84.03 0.81 -13.73 16 20 H 0.06 3.38 7.87 -2.91 -0.02 3.36 16 21 C -0.05 -2.69 4.98 84.86 0.42 -2.27 16 22 N -0.93 -54.31 11.17 21.65 0.24 -54.06 16 23 Si 0.97 44.40 29.58 68.60 2.03 46.43 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 H -0.29 -12.96 7.11 99.48 0.71 -12.25 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 C 0.14 6.08 6.69 86.35 0.58 6.66 16 28 C 0.05 1.84 5.46 86.38 0.47 2.31 16 29 C 0.12 2.69 5.23 86.86 0.45 3.15 16 30 H 0.10 0.71 8.14 -2.39 -0.02 0.69 16 31 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 32 H 0.06 0.77 7.96 -2.38 -0.02 0.75 16 33 H 0.18 3.24 8.06 -2.91 -0.02 3.22 16 34 H 0.23 2.64 8.06 -2.91 -0.02 2.61 16 35 H 0.15 0.41 8.02 -2.38 -0.02 0.39 16 36 H 0.16 0.16 8.13 -2.39 -0.02 0.14 16 37 H 0.10 0.29 8.14 -2.39 -0.02 0.27 16 38 H 0.10 0.21 8.14 -2.38 -0.02 0.19 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.10 7.94 -2.39 -0.02 1.08 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 2.62 6.93 -2.39 -0.02 2.61 16 43 H 0.00 0.05 8.14 -2.39 -0.02 0.03 16 44 H 0.06 2.96 6.22 -2.39 -0.01 2.94 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 48 H 0.08 2.46 6.73 -2.39 -0.02 2.44 16 49 H 0.02 0.78 8.14 -2.39 -0.02 0.76 16 50 H 0.06 1.48 7.74 -2.39 -0.02 1.47 16 51 H 0.07 1.72 8.14 -2.39 -0.02 1.70 16 Total: -1.00 -81.23 404.86 0.94 -80.29 By element: Atomic # 1 Polarization: 7.96 SS G_CDS: 0.91 Total: 8.87 kcal Atomic # 6 Polarization: 15.53 SS G_CDS: 9.95 Total: 25.48 kcal Atomic # 7 Polarization: -131.78 SS G_CDS: -11.89 Total: -143.67 kcal Atomic # 8 Polarization: -17.34 SS G_CDS: -0.05 Total: -17.39 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.43 kcal Total: -81.23 0.94 -80.29 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052052642.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 133.263 kcal (2) G-P(sol) polarization free energy of solvation -81.233 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.030 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.942 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.291 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.972 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds