Wall clock time and date at job start Wed Apr 1 2020 05:07:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39671 * 127.32116 * 2 1 4 4 N 1.30864 * 107.86136 * 180.23378 * 3 2 1 5 5 N 1.28443 * 110.92488 * 359.77118 * 4 3 2 6 6 C 1.46501 * 125.18377 * 180.02562 * 5 4 3 7 7 C 1.36600 * 109.62144 * 0.02562 * 5 4 3 8 8 C 1.47158 * 126.88147 * 179.97438 * 7 5 4 9 9 O 1.21630 * 120.00139 * 91.54600 * 8 7 5 10 10 N 1.34777 * 119.99859 * 271.54377 * 8 7 5 11 11 C 1.47020 * 125.65231 * 4.72765 * 10 8 7 12 12 C 1.54321 * 107.27467 * 178.90328 * 11 10 8 13 13 C 1.55154 * 102.94381 * 337.81276 * 12 11 10 14 14 H 1.09002 * 111.03806 * 277.41260 * 13 12 11 15 15 N 1.46898 * 111.00712 * 153.57129 * 13 12 11 16 16 C 1.46904 * 111.00101 * 192.10027 * 15 13 12 17 17 C 1.53239 * 109.33626 * 172.74693 * 16 15 13 18 18 N 1.47078 * 108.52203 * 53.83521 * 17 16 15 19 19 C 1.36940 * 120.88075 * 128.78757 * 18 17 16 20 20 H 1.07997 * 120.00171 * 210.43891 * 19 18 17 21 21 C 1.38811 * 119.99932 * 30.44459 * 19 18 17 22 22 N 1.31619 * 119.99984 * 10.47750 * 21 19 18 23 23 Si 1.86797 * 119.99906 * 190.47550 * 21 19 18 24 24 H 1.48494 * 109.47268 * 60.00059 * 23 21 19 25 25 H 1.48503 * 109.46888 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46977 * 299.99685 * 23 21 19 27 27 C 1.47079 * 118.23712 * 308.81175 * 18 17 16 28 28 C 1.46907 * 110.99520 * 67.80476 * 15 13 12 29 29 C 1.47425 * 125.64662 * 184.68814 * 10 8 7 30 30 H 1.09004 * 109.47123 * 270.14591 * 1 2 3 31 31 H 1.08993 * 109.47249 * 30.14611 * 1 2 3 32 32 H 1.08996 * 109.46927 * 150.15165 * 1 2 3 33 33 H 1.07998 * 126.07081 * 0.03971 * 3 2 1 34 34 H 1.09000 * 109.46940 * 274.82606 * 6 5 4 35 35 H 1.08993 * 109.47560 * 34.83509 * 6 5 4 36 36 H 1.09002 * 109.46835 * 154.83253 * 6 5 4 37 37 H 1.08998 * 109.88331 * 298.33077 * 11 10 8 38 38 H 1.09005 * 109.87927 * 59.33394 * 11 10 8 39 39 H 1.09000 * 110.72328 * 219.44791 * 12 11 10 40 40 H 1.09006 * 110.71706 * 96.17093 * 12 11 10 41 41 H 1.08997 * 109.49592 * 292.71076 * 16 15 13 42 42 H 1.08996 * 109.48558 * 52.79374 * 16 15 13 43 43 H 1.08995 * 109.63151 * 294.12335 * 17 16 15 44 44 H 1.09003 * 109.62333 * 173.54106 * 17 16 15 45 45 H 0.97005 * 119.99886 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.62858 * 291.47214 * 27 18 17 47 47 H 1.08996 * 109.62605 * 170.89411 * 27 18 17 48 48 H 1.08992 * 109.49136 * 307.20996 * 28 15 13 49 49 H 1.08992 * 109.49322 * 67.26810 * 28 15 13 50 50 H 1.09008 * 110.36709 * 85.32763 * 29 10 8 51 51 H 1.09000 * 110.37055 * 323.00528 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3539 1.1107 0.0000 4 7 3.5877 0.6748 -0.0051 5 7 3.6206 -0.6092 -0.0036 6 6 4.8392 -1.4225 -0.0076 7 6 2.3461 -1.1007 0.0023 8 6 1.9455 -2.5167 0.0053 9 8 1.7572 -3.0933 1.0595 10 7 1.7874 -3.1747 -1.1603 11 6 2.0751 -2.6326 -2.4963 12 6 1.7716 -3.7481 -3.5186 13 6 1.8696 -5.0391 -2.6636 14 1 2.9057 -5.3613 -2.5588 15 7 1.0427 -6.1115 -3.2326 16 6 0.9037 -7.2272 -2.2871 17 6 -0.1065 -8.2381 -2.8399 18 7 0.3111 -8.6215 -4.1971 19 6 0.4259 -9.9393 -4.5512 20 1 1.1506 -10.2376 -5.2943 21 6 -0.3892 -10.8917 -3.9550 22 7 -1.4055 -10.5140 -3.2089 23 14 -0.0437 -12.7094 -4.2118 24 1 1.3144 -13.0316 -3.7049 25 1 -1.0506 -13.5137 -3.4739 26 1 -0.1199 -13.0279 -5.6603 27 6 0.6026 -7.5519 -5.1637 28 6 1.5850 -6.5680 -4.5194 29 6 1.2980 -4.5576 -1.3067 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5115 33 1 2.0452 2.1457 0.0006 34 1 5.1851 -1.5536 -1.0329 35 1 5.6120 -0.9219 0.5756 36 1 4.6268 -2.3973 0.4316 37 1 1.4395 -1.7687 -2.6905 38 1 3.1239 -2.3428 -2.5607 39 1 2.5165 -3.7550 -4.3143 40 1 0.7684 -3.6326 -3.9289 41 1 1.8699 -7.7140 -2.1543 42 1 0.5517 -6.8488 -1.3275 43 1 -1.0967 -7.7838 -2.8761 44 1 -0.1286 -9.1206 -2.2006 45 1 -1.9749 -11.1796 -2.7919 46 1 -0.3194 -7.0317 -5.4233 47 1 1.0493 -7.9808 -6.0606 48 1 1.7269 -5.7117 -5.1785 49 1 2.5418 -7.0635 -4.3555 50 1 0.2082 -4.5743 -1.3269 51 1 1.6728 -5.1807 -0.4946 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052067793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:40 Heat of formation + Delta-G solvation = 89.877722 kcal Electronic energy + Delta-G solvation = -31396.039714 eV Core-core repulsion = 27333.383076 eV Total energy + Delta-G solvation = -4062.656638 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -42.81084 -40.18346 -38.49844 -36.86668 -34.31500 -34.24102 -32.36838 -31.54080 -30.81957 -29.80978 -29.05352 -28.31287 -26.49478 -26.03803 -24.22841 -22.95361 -22.71836 -21.62709 -21.21575 -20.45991 -19.32115 -19.18025 -17.99004 -17.21776 -16.75295 -16.19319 -16.05618 -15.68676 -15.02169 -14.79056 -14.47444 -14.10645 -14.09665 -13.91784 -13.68575 -13.65463 -13.48317 -13.43379 -13.16432 -13.01047 -12.86945 -12.79398 -12.67057 -12.45585 -12.36390 -11.85287 -11.49055 -11.27495 -11.05768 -10.94702 -10.92237 -10.77316 -10.50236 -10.41958 -10.31410 -10.06497 -9.79369 -9.64360 -9.45042 -8.96015 -8.94586 -8.53659 -7.96379 -6.63739 -5.79875 -3.26990 1.37197 1.79158 2.35415 2.41691 2.75008 3.36355 3.42072 3.42572 3.97449 4.13341 4.15214 4.46989 4.49558 4.52280 4.65790 4.72973 4.82330 4.84602 4.96198 5.08907 5.12349 5.19854 5.32415 5.34457 5.38749 5.41809 5.45149 5.61908 5.69455 5.72474 5.76397 5.80171 5.84905 5.85697 5.90024 6.06956 6.10587 6.19839 6.27365 6.28904 6.42500 6.48813 6.65283 6.88646 7.10526 7.21178 7.49464 7.59610 7.68137 7.72752 7.76186 7.78036 8.44203 9.20162 9.81427 10.41276 11.28580 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.002170 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.048492 B =12902.047396 C =13062.482368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.158 4.158 3 C 0.006 3.994 4 N -0.284 5.284 5 N -0.274 5.274 6 C 0.087 3.913 7 C -0.023 4.023 8 C 0.606 3.394 9 O -0.520 6.520 10 N -0.604 5.604 11 C 0.105 3.895 12 C -0.121 4.121 13 C 0.070 3.930 14 H 0.051 0.949 15 N -0.520 5.520 16 C 0.031 3.969 17 C 0.180 3.820 18 N -0.595 5.595 19 C -0.254 4.254 20 H 0.063 0.937 21 C 0.004 3.996 22 N -0.905 5.905 23 Si 0.905 3.095 24 H -0.284 1.284 25 H -0.290 1.290 26 H -0.282 1.282 27 C 0.149 3.851 28 C 0.046 3.954 29 C 0.114 3.886 30 H 0.070 0.930 31 H 0.072 0.928 32 H 0.063 0.937 33 H 0.186 0.814 34 H 0.086 0.914 35 H 0.099 0.901 36 H 0.092 0.908 37 H 0.073 0.927 38 H 0.062 0.938 39 H 0.080 0.920 40 H 0.092 0.908 41 H 0.026 0.974 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.089 0.911 45 H 0.255 0.745 46 H 0.026 0.974 47 H 0.055 0.945 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.087 0.913 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.170 22.144 3.153 24.174 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.169 4.169 3 C -0.171 4.171 4 N -0.115 5.115 5 N -0.062 5.062 6 C -0.054 4.054 7 C -0.152 4.152 8 C 0.391 3.609 9 O -0.394 6.394 10 N -0.338 5.338 11 C -0.019 4.019 12 C -0.159 4.159 13 C -0.040 4.040 14 H 0.069 0.931 15 N -0.245 5.245 16 C -0.098 4.098 17 C 0.054 3.946 18 N -0.319 5.319 19 C -0.384 4.384 20 H 0.081 0.919 21 C -0.194 4.194 22 N -0.549 5.549 23 Si 0.735 3.265 24 H -0.211 1.211 25 H -0.216 1.216 26 H -0.209 1.209 27 C 0.022 3.978 28 C -0.084 4.084 29 C -0.008 4.008 30 H 0.089 0.911 31 H 0.091 0.909 32 H 0.082 0.918 33 H 0.203 0.797 34 H 0.105 0.895 35 H 0.118 0.882 36 H 0.111 0.889 37 H 0.091 0.909 38 H 0.080 0.920 39 H 0.099 0.901 40 H 0.111 0.889 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.065 0.935 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.105 0.895 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 9.748 22.161 3.786 24.505 hybrid contribution 0.280 -1.464 0.031 1.491 sum 10.029 20.697 3.817 23.314 Atomic orbital electron populations 1.20138 0.88253 1.02744 1.02521 1.20691 0.96942 0.90598 1.08627 1.23439 0.87673 0.99886 1.06151 1.73138 1.24487 0.93129 1.20724 1.45502 1.05395 1.03729 1.51568 1.22184 0.83911 0.94700 1.04557 1.21235 0.86134 0.94381 1.13401 1.16591 0.78033 0.83494 0.82811 1.90877 1.50800 1.67388 1.30336 1.48379 1.64459 1.15209 1.05732 1.22074 1.00521 0.97685 0.81580 1.22695 1.03946 0.92523 0.96765 1.22735 0.95511 0.92665 0.93108 0.93124 1.62050 1.47951 1.10152 1.04350 1.23001 1.00372 0.91913 0.94525 1.20865 0.92439 0.94808 0.86503 1.44064 1.79815 1.01229 1.06762 1.19116 1.13977 0.82654 1.22661 0.91898 1.25157 0.95326 0.98451 1.00516 1.69954 1.16583 1.32603 1.35748 0.86339 0.77351 0.85021 0.77809 1.21072 1.21560 1.20858 1.20979 0.95310 0.89203 0.92272 1.22635 0.97395 0.98022 0.90326 1.22371 1.00314 0.80574 0.97533 0.91081 0.90865 0.91789 0.79695 0.89550 0.88223 0.88913 0.90877 0.91952 0.90094 0.88896 0.95579 0.91882 0.95453 0.89265 0.93476 0.95607 0.92613 0.91899 0.95412 0.89494 0.90120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.28 36.01 0.37 -0.30 16 2 C -0.16 -1.67 6.30 -104.02 -0.65 -2.32 16 3 C 0.01 0.06 12.00 -17.43 -0.21 -0.15 16 4 N -0.28 -3.13 11.90 30.59 0.36 -2.77 16 5 N -0.27 -2.90 3.75 -63.88 -0.24 -3.14 16 6 C 0.09 0.62 11.21 59.85 0.67 1.29 16 7 C -0.02 -0.27 5.90 -82.06 -0.48 -0.76 16 8 C 0.61 8.06 6.80 -12.64 -0.09 7.98 16 9 O -0.52 -8.79 17.34 5.25 0.09 -8.69 16 10 N -0.60 -7.07 3.33 -171.88 -0.57 -7.64 16 11 C 0.10 0.96 6.47 -3.07 -0.02 0.94 16 12 C -0.12 -1.19 5.62 -24.90 -0.14 -1.33 16 13 C 0.07 0.88 2.72 -65.57 -0.18 0.70 16 14 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16 15 N -0.52 -8.35 4.53 -223.78 -1.01 -9.37 16 16 C 0.03 0.57 5.43 -3.70 -0.02 0.55 16 17 C 0.18 4.22 5.36 -3.60 -0.02 4.20 16 18 N -0.60 -14.67 3.03 -172.02 -0.52 -15.19 16 19 C -0.25 -6.87 9.62 -15.06 -0.14 -7.02 16 20 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16 21 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16 22 N -0.90 -25.94 11.04 55.49 0.61 -25.33 16 23 Si 0.91 21.46 29.57 -169.99 -5.03 16.43 16 24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 27 C 0.15 3.02 6.69 -3.60 -0.02 3.00 16 28 C 0.05 0.75 5.52 -3.69 -0.02 0.73 16 29 C 0.11 1.48 5.06 -2.53 -0.01 1.46 16 30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.06 0.59 8.07 -51.93 -0.42 0.18 16 33 H 0.19 1.18 8.06 -52.49 -0.42 0.75 16 34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 35 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16 36 H 0.09 0.69 7.66 -51.93 -0.40 0.29 16 37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16 40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 42 H 0.06 1.07 6.60 -51.93 -0.34 0.73 16 43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.09 2.34 6.20 -51.93 -0.32 2.02 16 45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16 46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 48 H 0.06 0.85 7.11 -51.93 -0.37 0.48 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.09 1.21 8.12 -51.92 -0.42 0.78 16 51 H 0.08 1.13 7.72 -51.93 -0.40 0.73 16 LS Contribution 405.16 15.07 6.11 6.11 Total: -1.00 -32.88 405.16 -9.80 -42.68 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -8.54 Total: -2.09 kcal Atomic # 6 Polarization: 10.07 SS G_CDS: -1.06 Total: 9.01 kcal Atomic # 7 Polarization: -62.07 SS G_CDS: -1.37 Total: -63.44 kcal Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.69 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.88 -9.80 -42.68 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052067793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 132.558 kcal (2) G-P(sol) polarization free energy of solvation -32.879 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.679 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal (6) G-S(sol) free energy of system = (1) + (5) 89.878 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds