Wall clock time and date at job start Wed Apr 1 2020 05:07:40
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* DEV - DEVELOPER OPTIONS ARE ALLOWED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS USER-SPECIFIED
* DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06
* IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345
* ALPHA - THE SOLVENT ALPHA IS 0.00
* BETA - THE SOLVENT BETA IS 0.00
* GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS
* 38.93 CAL MOL^-1 ANGSTROM^-2
* FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00
* FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.50707 * 1
3 3 C 1.39671 * 127.32116 * 2 1
4 4 N 1.30864 * 107.86136 * 180.23378 * 3 2 1
5 5 N 1.28443 * 110.92488 * 359.77118 * 4 3 2
6 6 C 1.46501 * 125.18377 * 180.02562 * 5 4 3
7 7 C 1.36600 * 109.62144 * 0.02562 * 5 4 3
8 8 C 1.47158 * 126.88147 * 179.97438 * 7 5 4
9 9 O 1.21630 * 120.00139 * 91.54600 * 8 7 5
10 10 N 1.34777 * 119.99859 * 271.54377 * 8 7 5
11 11 C 1.47020 * 125.65231 * 4.72765 * 10 8 7
12 12 C 1.54321 * 107.27467 * 178.90328 * 11 10 8
13 13 C 1.55154 * 102.94381 * 337.81276 * 12 11 10
14 14 H 1.09002 * 111.03806 * 277.41260 * 13 12 11
15 15 N 1.46898 * 111.00712 * 153.57129 * 13 12 11
16 16 C 1.46904 * 111.00101 * 192.10027 * 15 13 12
17 17 C 1.53239 * 109.33626 * 172.74693 * 16 15 13
18 18 N 1.47078 * 108.52203 * 53.83521 * 17 16 15
19 19 C 1.36940 * 120.88075 * 128.78757 * 18 17 16
20 20 H 1.07997 * 120.00171 * 210.43891 * 19 18 17
21 21 C 1.38811 * 119.99932 * 30.44459 * 19 18 17
22 22 N 1.31619 * 119.99984 * 10.47750 * 21 19 18
23 23 Si 1.86797 * 119.99906 * 190.47550 * 21 19 18
24 24 H 1.48494 * 109.47268 * 60.00059 * 23 21 19
25 25 H 1.48503 * 109.46888 * 179.97438 * 23 21 19
26 26 H 1.48503 * 109.46977 * 299.99685 * 23 21 19
27 27 C 1.47079 * 118.23712 * 308.81175 * 18 17 16
28 28 C 1.46907 * 110.99520 * 67.80476 * 15 13 12
29 29 C 1.47425 * 125.64662 * 184.68814 * 10 8 7
30 30 H 1.09004 * 109.47123 * 270.14591 * 1 2 3
31 31 H 1.08993 * 109.47249 * 30.14611 * 1 2 3
32 32 H 1.08996 * 109.46927 * 150.15165 * 1 2 3
33 33 H 1.07998 * 126.07081 * 0.03971 * 3 2 1
34 34 H 1.09000 * 109.46940 * 274.82606 * 6 5 4
35 35 H 1.08993 * 109.47560 * 34.83509 * 6 5 4
36 36 H 1.09002 * 109.46835 * 154.83253 * 6 5 4
37 37 H 1.08998 * 109.88331 * 298.33077 * 11 10 8
38 38 H 1.09005 * 109.87927 * 59.33394 * 11 10 8
39 39 H 1.09000 * 110.72328 * 219.44791 * 12 11 10
40 40 H 1.09006 * 110.71706 * 96.17093 * 12 11 10
41 41 H 1.08997 * 109.49592 * 292.71076 * 16 15 13
42 42 H 1.08996 * 109.48558 * 52.79374 * 16 15 13
43 43 H 1.08995 * 109.63151 * 294.12335 * 17 16 15
44 44 H 1.09003 * 109.62333 * 173.54106 * 17 16 15
45 45 H 0.97005 * 119.99886 * 180.02562 * 22 21 19
46 46 H 1.08998 * 109.62858 * 291.47214 * 27 18 17
47 47 H 1.08996 * 109.62605 * 170.89411 * 27 18 17
48 48 H 1.08992 * 109.49136 * 307.20996 * 28 15 13
49 49 H 1.08992 * 109.49322 * 67.26810 * 28 15 13
50 50 H 1.09008 * 110.36709 * 85.32763 * 29 10 8
51 51 H 1.09000 * 110.37055 * 323.00528 * 29 10 8
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5071 0.0000 0.0000
3 6 2.3539 1.1107 0.0000
4 7 3.5877 0.6748 -0.0051
5 7 3.6206 -0.6092 -0.0036
6 6 4.8392 -1.4225 -0.0076
7 6 2.3461 -1.1007 0.0023
8 6 1.9455 -2.5167 0.0053
9 8 1.7572 -3.0933 1.0595
10 7 1.7874 -3.1747 -1.1603
11 6 2.0751 -2.6326 -2.4963
12 6 1.7716 -3.7481 -3.5186
13 6 1.8696 -5.0391 -2.6636
14 1 2.9057 -5.3613 -2.5588
15 7 1.0427 -6.1115 -3.2326
16 6 0.9037 -7.2272 -2.2871
17 6 -0.1065 -8.2381 -2.8399
18 7 0.3111 -8.6215 -4.1971
19 6 0.4259 -9.9393 -4.5512
20 1 1.1506 -10.2376 -5.2943
21 6 -0.3892 -10.8917 -3.9550
22 7 -1.4055 -10.5140 -3.2089
23 14 -0.0437 -12.7094 -4.2118
24 1 1.3144 -13.0316 -3.7049
25 1 -1.0506 -13.5137 -3.4739
26 1 -0.1199 -13.0279 -5.6603
27 6 0.6026 -7.5519 -5.1637
28 6 1.5850 -6.5680 -4.5194
29 6 1.2980 -4.5576 -1.3067
30 1 -0.3633 0.0026 1.0277
31 1 -0.3633 0.8886 -0.5161
32 1 -0.3633 -0.8913 -0.5115
33 1 2.0452 2.1457 0.0006
34 1 5.1851 -1.5536 -1.0329
35 1 5.6120 -0.9219 0.5756
36 1 4.6268 -2.3973 0.4316
37 1 1.4395 -1.7687 -2.6905
38 1 3.1239 -2.3428 -2.5607
39 1 2.5165 -3.7550 -4.3143
40 1 0.7684 -3.6326 -3.9289
41 1 1.8699 -7.7140 -2.1543
42 1 0.5517 -6.8488 -1.3275
43 1 -1.0967 -7.7838 -2.8761
44 1 -0.1286 -9.1206 -2.2006
45 1 -1.9749 -11.1796 -2.7919
46 1 -0.3194 -7.0317 -5.4233
47 1 1.0493 -7.9808 -6.0606
48 1 1.7269 -5.7117 -5.1785
49 1 2.5418 -7.0635 -4.3555
50 1 0.2082 -4.5743 -1.3269
51 1 1.6728 -5.1807 -0.4946
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93
& DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV
ZINC001052067793.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:07:40
Heat of formation + Delta-G solvation = 89.877722 kcal
Electronic energy + Delta-G solvation = -31396.039714 eV
Core-core repulsion = 27333.383076 eV
Total energy + Delta-G solvation = -4062.656638 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.206 amu
Computer time = 1.12 seconds
Orbital eigenvalues (eV)
-42.81084 -40.18346 -38.49844 -36.86668 -34.31500 -34.24102 -32.36838 -31.54080
-30.81957 -29.80978 -29.05352 -28.31287 -26.49478 -26.03803 -24.22841 -22.95361
-22.71836 -21.62709 -21.21575 -20.45991 -19.32115 -19.18025 -17.99004 -17.21776
-16.75295 -16.19319 -16.05618 -15.68676 -15.02169 -14.79056 -14.47444 -14.10645
-14.09665 -13.91784 -13.68575 -13.65463 -13.48317 -13.43379 -13.16432 -13.01047
-12.86945 -12.79398 -12.67057 -12.45585 -12.36390 -11.85287 -11.49055 -11.27495
-11.05768 -10.94702 -10.92237 -10.77316 -10.50236 -10.41958 -10.31410 -10.06497
-9.79369 -9.64360 -9.45042 -8.96015 -8.94586 -8.53659 -7.96379 -6.63739
-5.79875 -3.26990 1.37197 1.79158 2.35415 2.41691 2.75008 3.36355
3.42072 3.42572 3.97449 4.13341 4.15214 4.46989 4.49558 4.52280
4.65790 4.72973 4.82330 4.84602 4.96198 5.08907 5.12349 5.19854
5.32415 5.34457 5.38749 5.41809 5.45149 5.61908 5.69455 5.72474
5.76397 5.80171 5.84905 5.85697 5.90024 6.06956 6.10587 6.19839
6.27365 6.28904 6.42500 6.48813 6.65283 6.88646 7.10526 7.21178
7.49464 7.59610 7.68137 7.72752 7.76186 7.78036 8.44203 9.20162
9.81427 10.41276 11.28580
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.024405 B = 0.002170 C = 0.002143
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 1147.048492 B =12902.047396 C =13062.482368
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.079 4.079
2 C -0.158 4.158
3 C 0.006 3.994
4 N -0.284 5.284
5 N -0.274 5.274
6 C 0.087 3.913
7 C -0.023 4.023
8 C 0.606 3.394
9 O -0.520 6.520
10 N -0.604 5.604
11 C 0.105 3.895
12 C -0.121 4.121
13 C 0.070 3.930
14 H 0.051 0.949
15 N -0.520 5.520
16 C 0.031 3.969
17 C 0.180 3.820
18 N -0.595 5.595
19 C -0.254 4.254
20 H 0.063 0.937
21 C 0.004 3.996
22 N -0.905 5.905
23 Si 0.905 3.095
24 H -0.284 1.284
25 H -0.290 1.290
26 H -0.282 1.282
27 C 0.149 3.851
28 C 0.046 3.954
29 C 0.114 3.886
30 H 0.070 0.930
31 H 0.072 0.928
32 H 0.063 0.937
33 H 0.186 0.814
34 H 0.086 0.914
35 H 0.099 0.901
36 H 0.092 0.908
37 H 0.073 0.927
38 H 0.062 0.938
39 H 0.080 0.920
40 H 0.092 0.908
41 H 0.026 0.974
42 H 0.063 0.937
43 H 0.027 0.973
44 H 0.089 0.911
45 H 0.255 0.745
46 H 0.026 0.974
47 H 0.055 0.945
48 H 0.063 0.937
49 H 0.028 0.972
50 H 0.087 0.913
51 H 0.080 0.920
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 9.170 22.144 3.153 24.174
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.137 4.137
2 C -0.169 4.169
3 C -0.171 4.171
4 N -0.115 5.115
5 N -0.062 5.062
6 C -0.054 4.054
7 C -0.152 4.152
8 C 0.391 3.609
9 O -0.394 6.394
10 N -0.338 5.338
11 C -0.019 4.019
12 C -0.159 4.159
13 C -0.040 4.040
14 H 0.069 0.931
15 N -0.245 5.245
16 C -0.098 4.098
17 C 0.054 3.946
18 N -0.319 5.319
19 C -0.384 4.384
20 H 0.081 0.919
21 C -0.194 4.194
22 N -0.549 5.549
23 Si 0.735 3.265
24 H -0.211 1.211
25 H -0.216 1.216
26 H -0.209 1.209
27 C 0.022 3.978
28 C -0.084 4.084
29 C -0.008 4.008
30 H 0.089 0.911
31 H 0.091 0.909
32 H 0.082 0.918
33 H 0.203 0.797
34 H 0.105 0.895
35 H 0.118 0.882
36 H 0.111 0.889
37 H 0.091 0.909
38 H 0.080 0.920
39 H 0.099 0.901
40 H 0.111 0.889
41 H 0.044 0.956
42 H 0.081 0.919
43 H 0.045 0.955
44 H 0.107 0.893
45 H 0.065 0.935
46 H 0.044 0.956
47 H 0.074 0.926
48 H 0.081 0.919
49 H 0.046 0.954
50 H 0.105 0.895
51 H 0.099 0.901
Dipole moment (debyes) X Y Z Total
from point charges 9.748 22.161 3.786 24.505
hybrid contribution 0.280 -1.464 0.031 1.491
sum 10.029 20.697 3.817 23.314
Atomic orbital electron populations
1.20138 0.88253 1.02744 1.02521 1.20691 0.96942 0.90598 1.08627
1.23439 0.87673 0.99886 1.06151 1.73138 1.24487 0.93129 1.20724
1.45502 1.05395 1.03729 1.51568 1.22184 0.83911 0.94700 1.04557
1.21235 0.86134 0.94381 1.13401 1.16591 0.78033 0.83494 0.82811
1.90877 1.50800 1.67388 1.30336 1.48379 1.64459 1.15209 1.05732
1.22074 1.00521 0.97685 0.81580 1.22695 1.03946 0.92523 0.96765
1.22735 0.95511 0.92665 0.93108 0.93124 1.62050 1.47951 1.10152
1.04350 1.23001 1.00372 0.91913 0.94525 1.20865 0.92439 0.94808
0.86503 1.44064 1.79815 1.01229 1.06762 1.19116 1.13977 0.82654
1.22661 0.91898 1.25157 0.95326 0.98451 1.00516 1.69954 1.16583
1.32603 1.35748 0.86339 0.77351 0.85021 0.77809 1.21072 1.21560
1.20858 1.20979 0.95310 0.89203 0.92272 1.22635 0.97395 0.98022
0.90326 1.22371 1.00314 0.80574 0.97533 0.91081 0.90865 0.91789
0.79695 0.89550 0.88223 0.88913 0.90877 0.91952 0.90094 0.88896
0.95579 0.91882 0.95453 0.89265 0.93476 0.95607 0.92613 0.91899
0.95412 0.89494 0.90120
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.08 -0.67 10.28 36.01 0.37 -0.30 16
2 C -0.16 -1.67 6.30 -104.02 -0.65 -2.32 16
3 C 0.01 0.06 12.00 -17.43 -0.21 -0.15 16
4 N -0.28 -3.13 11.90 30.59 0.36 -2.77 16
5 N -0.27 -2.90 3.75 -63.88 -0.24 -3.14 16
6 C 0.09 0.62 11.21 59.85 0.67 1.29 16
7 C -0.02 -0.27 5.90 -82.06 -0.48 -0.76 16
8 C 0.61 8.06 6.80 -12.64 -0.09 7.98 16
9 O -0.52 -8.79 17.34 5.25 0.09 -8.69 16
10 N -0.60 -7.07 3.33 -171.88 -0.57 -7.64 16
11 C 0.10 0.96 6.47 -3.07 -0.02 0.94 16
12 C -0.12 -1.19 5.62 -24.90 -0.14 -1.33 16
13 C 0.07 0.88 2.72 -65.57 -0.18 0.70 16
14 H 0.05 0.66 8.14 -51.93 -0.42 0.23 16
15 N -0.52 -8.35 4.53 -223.78 -1.01 -9.37 16
16 C 0.03 0.57 5.43 -3.70 -0.02 0.55 16
17 C 0.18 4.22 5.36 -3.60 -0.02 4.20 16
18 N -0.60 -14.67 3.03 -172.02 -0.52 -15.19 16
19 C -0.25 -6.87 9.62 -15.06 -0.14 -7.02 16
20 H 0.06 1.66 7.85 -52.49 -0.41 1.25 16
21 C 0.00 0.12 5.07 -17.43 -0.09 0.03 16
22 N -0.90 -25.94 11.04 55.49 0.61 -25.33 16
23 Si 0.91 21.46 29.57 -169.99 -5.03 16.43 16
24 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16
25 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16
26 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16
27 C 0.15 3.02 6.69 -3.60 -0.02 3.00 16
28 C 0.05 0.75 5.52 -3.69 -0.02 0.73 16
29 C 0.11 1.48 5.06 -2.53 -0.01 1.46 16
30 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16
31 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16
32 H 0.06 0.59 8.07 -51.93 -0.42 0.18 16
33 H 0.19 1.18 8.06 -52.49 -0.42 0.75 16
34 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16
35 H 0.10 0.56 8.14 -51.93 -0.42 0.13 16
36 H 0.09 0.69 7.66 -51.93 -0.40 0.29 16
37 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16
38 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16
39 H 0.08 0.68 7.97 -51.93 -0.41 0.27 16
40 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16
41 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16
42 H 0.06 1.07 6.60 -51.93 -0.34 0.73 16
43 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16
44 H 0.09 2.34 6.20 -51.93 -0.32 2.02 16
45 H 0.26 7.10 8.31 -40.82 -0.34 6.76 16
46 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16
47 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16
48 H 0.06 0.85 7.11 -51.93 -0.37 0.48 16
49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16
50 H 0.09 1.21 8.12 -51.92 -0.42 0.78 16
51 H 0.08 1.13 7.72 -51.93 -0.40 0.73 16
LS Contribution 405.16 15.07 6.11 6.11
Total: -1.00 -32.88 405.16 -9.80 -42.68
By element:
Atomic # 1 Polarization: 6.46 SS G_CDS: -8.54 Total: -2.09 kcal
Atomic # 6 Polarization: 10.07 SS G_CDS: -1.06 Total: 9.01 kcal
Atomic # 7 Polarization: -62.07 SS G_CDS: -1.37 Total: -63.44 kcal
Atomic # 8 Polarization: -8.79 SS G_CDS: 0.09 Total: -8.69 kcal
Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.43 kcal
Total LS contribution 6.11 Total: 6.11 kcal
Total: -32.88 -9.80 -42.68 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001052067793.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 132.558 kcal
(2) G-P(sol) polarization free energy of solvation -32.879 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 99.679 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.802 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.681 kcal
(6) G-S(sol) free energy of system = (1) + (5) 89.878 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.12 seconds