Wall clock time and date at job start Wed Apr 1 2020 05:07:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50707 * 1 3 3 C 1.39671 * 127.32116 * 2 1 4 4 N 1.30864 * 107.86136 * 180.23378 * 3 2 1 5 5 N 1.28443 * 110.92488 * 359.77118 * 4 3 2 6 6 C 1.46501 * 125.18377 * 180.02562 * 5 4 3 7 7 C 1.36600 * 109.62144 * 0.02562 * 5 4 3 8 8 C 1.47158 * 126.88147 * 179.97438 * 7 5 4 9 9 O 1.21630 * 120.00139 * 91.54600 * 8 7 5 10 10 N 1.34777 * 119.99859 * 271.54377 * 8 7 5 11 11 C 1.47020 * 125.65231 * 4.72765 * 10 8 7 12 12 C 1.54321 * 107.27467 * 178.90328 * 11 10 8 13 13 C 1.55154 * 102.94381 * 337.81276 * 12 11 10 14 14 H 1.09002 * 111.03806 * 277.41260 * 13 12 11 15 15 N 1.46898 * 111.00712 * 153.57129 * 13 12 11 16 16 C 1.46904 * 111.00101 * 192.10027 * 15 13 12 17 17 C 1.53239 * 109.33626 * 172.74693 * 16 15 13 18 18 N 1.47078 * 108.52203 * 53.83521 * 17 16 15 19 19 C 1.36940 * 120.88075 * 128.78757 * 18 17 16 20 20 H 1.07997 * 120.00171 * 210.43891 * 19 18 17 21 21 C 1.38811 * 119.99932 * 30.44459 * 19 18 17 22 22 N 1.31619 * 119.99984 * 10.47750 * 21 19 18 23 23 Si 1.86797 * 119.99906 * 190.47550 * 21 19 18 24 24 H 1.48494 * 109.47268 * 60.00059 * 23 21 19 25 25 H 1.48503 * 109.46888 * 179.97438 * 23 21 19 26 26 H 1.48503 * 109.46977 * 299.99685 * 23 21 19 27 27 C 1.47079 * 118.23712 * 308.81175 * 18 17 16 28 28 C 1.46907 * 110.99520 * 67.80476 * 15 13 12 29 29 C 1.47425 * 125.64662 * 184.68814 * 10 8 7 30 30 H 1.09004 * 109.47123 * 270.14591 * 1 2 3 31 31 H 1.08993 * 109.47249 * 30.14611 * 1 2 3 32 32 H 1.08996 * 109.46927 * 150.15165 * 1 2 3 33 33 H 1.07998 * 126.07081 * 0.03971 * 3 2 1 34 34 H 1.09000 * 109.46940 * 274.82606 * 6 5 4 35 35 H 1.08993 * 109.47560 * 34.83509 * 6 5 4 36 36 H 1.09002 * 109.46835 * 154.83253 * 6 5 4 37 37 H 1.08998 * 109.88331 * 298.33077 * 11 10 8 38 38 H 1.09005 * 109.87927 * 59.33394 * 11 10 8 39 39 H 1.09000 * 110.72328 * 219.44791 * 12 11 10 40 40 H 1.09006 * 110.71706 * 96.17093 * 12 11 10 41 41 H 1.08997 * 109.49592 * 292.71076 * 16 15 13 42 42 H 1.08996 * 109.48558 * 52.79374 * 16 15 13 43 43 H 1.08995 * 109.63151 * 294.12335 * 17 16 15 44 44 H 1.09003 * 109.62333 * 173.54106 * 17 16 15 45 45 H 0.97005 * 119.99886 * 180.02562 * 22 21 19 46 46 H 1.08998 * 109.62858 * 291.47214 * 27 18 17 47 47 H 1.08996 * 109.62605 * 170.89411 * 27 18 17 48 48 H 1.08992 * 109.49136 * 307.20996 * 28 15 13 49 49 H 1.08992 * 109.49322 * 67.26810 * 28 15 13 50 50 H 1.09008 * 110.36709 * 85.32763 * 29 10 8 51 51 H 1.09000 * 110.37055 * 323.00528 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3539 1.1107 0.0000 4 7 3.5877 0.6748 -0.0051 5 7 3.6206 -0.6092 -0.0036 6 6 4.8392 -1.4225 -0.0076 7 6 2.3461 -1.1007 0.0023 8 6 1.9455 -2.5167 0.0053 9 8 1.7572 -3.0933 1.0595 10 7 1.7874 -3.1747 -1.1603 11 6 2.0751 -2.6326 -2.4963 12 6 1.7716 -3.7481 -3.5186 13 6 1.8696 -5.0391 -2.6636 14 1 2.9057 -5.3613 -2.5588 15 7 1.0427 -6.1115 -3.2326 16 6 0.9037 -7.2272 -2.2871 17 6 -0.1065 -8.2381 -2.8399 18 7 0.3111 -8.6215 -4.1971 19 6 0.4259 -9.9393 -4.5512 20 1 1.1506 -10.2376 -5.2943 21 6 -0.3892 -10.8917 -3.9550 22 7 -1.4055 -10.5140 -3.2089 23 14 -0.0437 -12.7094 -4.2118 24 1 1.3144 -13.0316 -3.7049 25 1 -1.0506 -13.5137 -3.4739 26 1 -0.1199 -13.0279 -5.6603 27 6 0.6026 -7.5519 -5.1637 28 6 1.5850 -6.5680 -4.5194 29 6 1.2980 -4.5576 -1.3067 30 1 -0.3633 0.0026 1.0277 31 1 -0.3633 0.8886 -0.5161 32 1 -0.3633 -0.8913 -0.5115 33 1 2.0452 2.1457 0.0006 34 1 5.1851 -1.5536 -1.0329 35 1 5.6120 -0.9219 0.5756 36 1 4.6268 -2.3973 0.4316 37 1 1.4395 -1.7687 -2.6905 38 1 3.1239 -2.3428 -2.5607 39 1 2.5165 -3.7550 -4.3143 40 1 0.7684 -3.6326 -3.9289 41 1 1.8699 -7.7140 -2.1543 42 1 0.5517 -6.8488 -1.3275 43 1 -1.0967 -7.7838 -2.8761 44 1 -0.1286 -9.1206 -2.2006 45 1 -1.9749 -11.1796 -2.7919 46 1 -0.3194 -7.0317 -5.4233 47 1 1.0493 -7.9808 -6.0606 48 1 1.7269 -5.7117 -5.1785 49 1 2.5418 -7.0635 -4.3555 50 1 0.2082 -4.5743 -1.3269 51 1 1.6728 -5.1807 -0.4946 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052067793.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:07:39 Heat of formation + Delta-G solvation = 67.928760 kcal Electronic energy + Delta-G solvation = -31396.991493 eV Core-core repulsion = 27333.383076 eV Total energy + Delta-G solvation = -4063.608417 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.57168 -41.21336 -39.79682 -38.18211 -35.85813 -34.99512 -33.55079 -32.89547 -32.08565 -31.29864 -30.02972 -29.26059 -27.72651 -27.08935 -25.45068 -24.51788 -24.11977 -22.61923 -21.94420 -21.61414 -20.81287 -20.16645 -18.87483 -18.80577 -17.91842 -17.28141 -16.87171 -16.77194 -16.62903 -15.98129 -15.77155 -15.47401 -15.29692 -15.22047 -14.88942 -14.71209 -14.67332 -14.36657 -14.27970 -13.98209 -13.94419 -13.65410 -13.54329 -13.39662 -13.17787 -13.08824 -13.08120 -12.69520 -12.59529 -12.53888 -12.27129 -12.01335 -11.95066 -11.79308 -11.71390 -11.47384 -11.42589 -11.35242 -10.58724 -10.21652 -9.92951 -9.70939 -9.32149 -8.61898 -7.86555 -5.36818 0.56111 0.91204 1.46570 1.48213 1.48593 1.55199 1.66013 1.90767 2.50273 2.90992 3.11873 3.30193 3.49325 3.55326 3.59413 3.70897 4.00811 4.08725 4.15088 4.16371 4.19075 4.22835 4.33753 4.37337 4.41136 4.45719 4.51364 4.57211 4.62052 4.62892 4.70945 4.72343 4.80147 4.82362 4.89333 4.90956 5.03001 5.07649 5.09057 5.12535 5.21174 5.23598 5.39869 5.55916 5.61673 5.71113 5.72389 6.10269 6.17674 6.24909 6.40381 6.72749 7.01120 7.15172 7.84825 8.39648 9.19505 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024405 B = 0.002170 C = 0.002143 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.048492 B =12902.047396 C =13062.482368 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C -0.163 4.163 3 C 0.007 3.993 4 N -0.298 5.298 5 N -0.276 5.276 6 C 0.079 3.921 7 C -0.044 4.044 8 C 0.610 3.390 9 O -0.567 6.567 10 N -0.598 5.598 11 C 0.107 3.893 12 C -0.110 4.110 13 C 0.074 3.926 14 H 0.057 0.943 15 N -0.525 5.525 16 C 0.049 3.951 17 C 0.188 3.812 18 N -0.615 5.615 19 C -0.263 4.263 20 H 0.067 0.933 21 C -0.051 4.051 22 N -0.937 5.937 23 Si 0.969 3.031 24 H -0.278 1.278 25 H -0.295 1.295 26 H -0.274 1.274 27 C 0.143 3.857 28 C 0.058 3.942 29 C 0.116 3.884 30 H 0.068 0.932 31 H 0.099 0.901 32 H 0.052 0.948 33 H 0.216 0.784 34 H 0.108 0.892 35 H 0.113 0.887 36 H 0.085 0.915 37 H 0.084 0.916 38 H 0.081 0.919 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.019 0.981 42 H 0.075 0.925 43 H -0.001 1.001 44 H 0.054 0.946 45 H 0.250 0.750 46 H 0.018 0.982 47 H 0.061 0.939 48 H 0.104 0.896 49 H 0.024 0.976 50 H 0.075 0.925 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.971 24.457 1.690 26.859 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.174 4.174 3 C -0.170 4.170 4 N -0.128 5.128 5 N -0.064 5.064 6 C -0.060 4.060 7 C -0.172 4.172 8 C 0.396 3.604 9 O -0.445 6.445 10 N -0.330 5.330 11 C -0.016 4.016 12 C -0.148 4.148 13 C -0.035 4.035 14 H 0.075 0.925 15 N -0.250 5.250 16 C -0.080 4.080 17 C 0.062 3.938 18 N -0.340 5.340 19 C -0.394 4.394 20 H 0.085 0.915 21 C -0.246 4.246 22 N -0.583 5.583 23 Si 0.797 3.203 24 H -0.204 1.204 25 H -0.221 1.221 26 H -0.200 1.200 27 C 0.018 3.982 28 C -0.071 4.071 29 C -0.007 4.007 30 H 0.087 0.913 31 H 0.117 0.883 32 H 0.071 0.929 33 H 0.233 0.767 34 H 0.126 0.874 35 H 0.132 0.868 36 H 0.103 0.897 37 H 0.102 0.898 38 H 0.100 0.900 39 H 0.125 0.875 40 H 0.109 0.891 41 H 0.037 0.963 42 H 0.093 0.907 43 H 0.017 0.983 44 H 0.072 0.928 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.080 0.920 48 H 0.122 0.878 49 H 0.042 0.958 50 H 0.093 0.907 51 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 11.586 24.513 2.270 27.208 hybrid contribution -0.289 -2.111 0.460 2.180 sum 11.297 22.402 2.730 25.237 Atomic orbital electron populations 1.20185 0.87243 1.03464 1.02625 1.21025 0.97804 0.90559 1.08036 1.23953 0.86969 1.01035 1.05054 1.73136 1.25233 0.93293 1.21169 1.45774 1.05674 1.03790 1.51162 1.22432 0.83255 0.94170 1.06192 1.21127 0.87269 0.93588 1.15242 1.16793 0.77210 0.84004 0.82393 1.90848 1.53044 1.68548 1.32031 1.48385 1.63499 1.14582 1.06558 1.22236 1.01969 0.97675 0.79672 1.22688 1.04773 0.90362 0.96948 1.22724 0.94872 0.92559 0.93365 0.92485 1.61950 1.49484 1.09646 1.03952 1.22602 0.98296 0.91785 0.95314 1.20571 0.92617 0.94442 0.86149 1.44352 1.79953 1.01667 1.07978 1.19473 1.13599 0.84103 1.22195 0.91527 1.25924 0.95399 1.02508 1.00801 1.70136 1.17679 1.33460 1.37011 0.85317 0.77015 0.80069 0.77860 1.20440 1.22124 1.19959 1.21160 0.96038 0.88904 0.92121 1.22477 0.95502 0.98407 0.90673 1.22218 0.99609 0.81365 0.97461 0.91283 0.88255 0.92907 0.76730 0.87401 0.86802 0.89657 0.89757 0.90037 0.87469 0.89130 0.96291 0.90718 0.98295 0.92804 0.94109 0.96371 0.92050 0.87826 0.95800 0.90677 0.91657 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.20 10.28 71.24 0.73 -0.47 16 2 C -0.16 -3.16 6.30 -19.48 -0.12 -3.28 16 3 C 0.01 0.11 12.00 85.18 1.02 1.13 16 4 N -0.30 -5.90 11.90 -57.14 -0.68 -6.58 16 5 N -0.28 -5.36 3.75 -356.03 -1.33 -6.69 16 6 C 0.08 0.99 11.21 127.77 1.43 2.42 16 7 C -0.04 -0.98 5.90 40.78 0.24 -0.74 16 8 C 0.61 15.99 6.80 86.59 0.59 16.58 16 9 O -0.57 -19.67 17.34 -4.13 -0.07 -19.74 16 10 N -0.60 -13.24 3.33 -815.95 -2.71 -15.95 16 11 C 0.11 1.62 6.47 86.73 0.56 2.18 16 12 C -0.11 -1.74 5.62 31.78 0.18 -1.56 16 13 C 0.07 1.70 2.72 46.31 0.13 1.83 16 14 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 15 N -0.53 -16.15 4.53 -861.90 -3.90 -20.05 16 16 C 0.05 1.85 5.43 86.38 0.47 2.32 16 17 C 0.19 9.19 5.36 86.35 0.46 9.65 16 18 N -0.62 -30.82 3.03 -698.14 -2.11 -32.93 16 19 C -0.26 -14.42 9.62 84.03 0.81 -13.61 16 20 H 0.07 3.52 7.85 -2.91 -0.02 3.50 16 21 C -0.05 -2.85 5.07 84.86 0.43 -2.42 16 22 N -0.94 -55.75 11.04 21.65 0.24 -55.51 16 23 Si 0.97 44.81 29.57 68.60 2.03 46.84 16 24 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 25 H -0.30 -13.77 7.11 99.48 0.71 -13.06 16 26 H -0.27 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.14 5.70 6.69 86.35 0.58 6.27 16 28 C 0.06 1.77 5.52 86.38 0.48 2.24 16 29 C 0.12 2.94 5.06 86.86 0.44 3.38 16 30 H 0.07 1.10 8.14 -2.38 -0.02 1.08 16 31 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 32 H 0.05 0.93 8.07 -2.39 -0.02 0.91 16 33 H 0.22 2.01 8.06 -2.91 -0.02 1.99 16 34 H 0.11 0.86 8.14 -2.39 -0.02 0.84 16 35 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 36 H 0.08 1.20 7.66 -2.39 -0.02 1.18 16 37 H 0.08 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.08 1.00 8.14 -2.38 -0.02 0.98 16 39 H 0.11 1.22 7.97 -2.39 -0.02 1.21 16 40 H 0.09 1.56 8.14 -2.38 -0.02 1.54 16 41 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 42 H 0.07 2.60 6.60 -2.39 -0.02 2.59 16 43 H 0.00 -0.06 8.14 -2.39 -0.02 -0.08 16 44 H 0.05 2.98 6.20 -2.39 -0.01 2.97 16 45 H 0.25 14.46 8.31 -92.70 -0.77 13.69 16 46 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 47 H 0.06 2.33 7.95 -2.39 -0.02 2.31 16 48 H 0.10 2.35 7.11 -2.39 -0.02 2.33 16 49 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 50 H 0.07 2.09 8.12 -2.38 -0.02 2.07 16 51 H 0.06 1.85 7.72 -2.39 -0.02 1.84 16 Total: -1.00 -74.19 405.16 0.78 -73.41 By element: Atomic # 1 Polarization: 10.37 SS G_CDS: 0.91 Total: 11.28 kcal Atomic # 6 Polarization: 17.51 SS G_CDS: 8.42 Total: 25.93 kcal Atomic # 7 Polarization: -127.21 SS G_CDS: -10.51 Total: -137.72 kcal Atomic # 8 Polarization: -19.67 SS G_CDS: -0.07 Total: -19.74 kcal Atomic # 14 Polarization: 44.81 SS G_CDS: 2.03 Total: 46.84 kcal Total: -74.19 0.78 -73.41 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052067793.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 141.336 kcal (2) G-P(sol) polarization free energy of solvation -74.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 67.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.783 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.407 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds