Wall clock time and date at job start Wed Apr 1 2020 05:04:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30856 * 125.41402 * 2 1 4 4 C 1.33326 * 109.68063 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.10314 * 179.97438 * 4 3 2 6 6 C 1.36660 * 107.78741 * 359.97438 * 4 3 2 7 7 C 1.46759 * 126.84283 * 179.97438 * 6 4 3 8 8 O 1.21682 * 120.00556 * 0.02562 * 7 6 4 9 9 N 1.34782 * 120.00064 * 179.72900 * 7 6 4 10 10 C 1.47020 * 125.64180 * 359.68850 * 9 7 6 11 11 C 1.54341 * 107.26346 * 178.85447 * 10 9 7 12 12 C 1.55165 * 103.01628 * 338.13977 * 11 10 9 13 13 H 1.08995 * 111.03620 * 277.21623 * 12 11 10 14 14 N 1.46903 * 111.00146 * 153.38083 * 12 11 10 15 15 C 1.46902 * 110.99941 * 186.40933 * 14 12 11 16 16 C 1.53237 * 109.33815 * 172.74870 * 15 14 12 17 17 N 1.47079 * 108.52346 * 53.83029 * 16 15 14 18 18 C 1.36936 * 120.88124 * 128.79453 * 17 16 15 19 19 H 1.07999 * 119.99551 * 209.23145 * 18 17 16 20 20 C 1.38813 * 120.00244 * 29.22355 * 18 17 16 21 21 N 1.31621 * 119.99582 * 13.14010 * 20 18 17 22 22 Si 1.86792 * 120.00206 * 193.13031 * 20 18 17 23 23 H 1.48499 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47157 * 120.00382 * 22 20 18 25 25 H 1.48497 * 109.47629 * 240.00406 * 22 20 18 26 26 C 1.47079 * 118.23716 * 308.81650 * 17 16 15 27 27 C 1.46903 * 110.99672 * 62.10813 * 14 12 11 28 28 C 1.47419 * 125.64917 * 180.02562 * 9 7 6 29 29 N 1.34489 * 125.42093 * 180.31643 * 2 1 3 30 30 H 0.97007 * 126.47367 * 359.96320 * 29 2 1 31 31 H 1.08994 * 109.46892 * 89.97768 * 1 2 3 32 32 H 1.09002 * 109.46828 * 209.97375 * 1 2 3 33 33 H 1.09003 * 109.46984 * 329.97442 * 1 2 3 34 34 H 1.08996 * 109.47111 * 269.99635 * 5 4 3 35 35 H 1.09001 * 109.47236 * 30.00123 * 5 4 3 36 36 H 1.09002 * 109.46781 * 150.00157 * 5 4 3 37 37 H 1.09000 * 109.88539 * 298.39310 * 10 9 7 38 38 H 1.09000 * 109.88731 * 59.56704 * 10 9 7 39 39 H 1.09003 * 110.85119 * 219.68043 * 11 10 9 40 40 H 1.08995 * 110.51552 * 96.45002 * 11 10 9 41 41 H 1.08993 * 109.49229 * 292.70854 * 15 14 12 42 42 H 1.08996 * 109.49136 * 52.79095 * 15 14 12 43 43 H 1.09005 * 109.62911 * 294.12033 * 16 15 14 44 44 H 1.08996 * 109.62619 * 173.54228 * 16 15 14 45 45 H 0.97001 * 119.99411 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.62737 * 291.47027 * 26 17 16 47 47 H 1.08996 * 109.62911 * 170.89733 * 26 17 16 48 48 H 1.08996 * 109.49627 * 307.20979 * 27 14 12 49 49 H 1.08997 * 109.49029 * 67.27185 * 27 14 12 50 50 H 1.08997 * 110.36607 * 322.92591 * 28 9 7 51 51 H 1.08995 * 110.36814 * 85.13886 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 4.7336 1.6361 -0.0013 6 6 3.5976 -0.6608 -0.0004 7 6 4.8029 -1.4981 -0.0013 8 8 5.9039 -0.9799 -0.0020 9 7 4.6904 -2.8412 0.0046 10 6 3.4283 -3.5952 0.0187 11 6 3.7906 -5.0952 -0.0086 12 6 5.2254 -5.0976 -0.5994 13 1 5.2004 -5.0464 -1.6879 14 7 5.9788 -6.2750 -0.1476 15 6 7.3805 -6.2011 -0.5811 16 6 8.1706 -7.3477 0.0587 17 7 7.4897 -8.6141 -0.2511 18 6 8.1785 -9.6697 -0.7864 19 1 7.6715 -10.3758 -1.4273 20 6 9.5281 -9.8321 -0.5054 21 7 10.0860 -9.1401 0.4653 22 14 10.5524 -11.0327 -1.5046 23 1 9.6953 -11.6810 -2.5295 24 1 11.6579 -10.3020 -2.1747 25 1 11.1183 -12.0693 -0.6045 26 6 6.0495 -8.7165 0.0289 27 6 5.3428 -7.5160 -0.6096 28 6 5.8125 -3.7974 0.0049 29 7 2.2865 -1.0960 -0.0061 30 1 1.9851 -2.0180 -0.0106 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3633 0.8898 0.5142 34 1 5.0188 1.8604 -1.0291 35 1 4.4696 2.5605 0.5125 36 1 5.5694 1.1609 0.5122 37 1 2.8683 -3.3636 0.9247 38 1 2.8358 -3.3428 -0.8607 39 1 3.1072 -5.6477 -0.6535 40 1 3.7884 -5.5072 1.0005 41 1 7.4305 -6.2862 -1.6665 42 1 7.8074 -5.2476 -0.2705 43 1 8.2094 -7.2076 1.1390 44 1 9.1818 -7.3668 -0.3475 45 1 11.0291 -9.2538 0.6619 46 1 5.8845 -8.7080 1.1063 47 1 5.6585 -9.6405 -0.3968 48 1 4.2921 -7.5160 -0.3198 49 1 5.4209 -7.5825 -1.6947 50 1 6.6280 -3.4255 -0.6152 51 1 6.1606 -3.9734 1.0227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052081369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:52 Heat of formation + Delta-G solvation = 65.029857 kcal Electronic energy + Delta-G solvation = -31053.237115 eV Core-core repulsion = 26989.502992 eV Total energy + Delta-G solvation = -4063.734123 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -42.66053 -40.13876 -38.48363 -36.97085 -34.42988 -33.62532 -32.62131 -31.58571 -30.90477 -29.80013 -29.50032 -28.81645 -27.03273 -25.82745 -23.91951 -23.05049 -22.43718 -21.53053 -21.38412 -20.44953 -19.68611 -19.21861 -17.89715 -17.20481 -16.58810 -16.42811 -16.06843 -15.62142 -14.99556 -14.64943 -14.49788 -14.25539 -14.12821 -14.06145 -13.59558 -13.49072 -13.46258 -13.42319 -13.20478 -12.92777 -12.85476 -12.74096 -12.64985 -12.47234 -12.28219 -11.93320 -11.50087 -11.31402 -11.14000 -11.02694 -10.80186 -10.67432 -10.46836 -10.36137 -10.30367 -10.09749 -10.07585 -9.80659 -9.63879 -9.05853 -8.60672 -8.55462 -7.99261 -6.67339 -5.81367 -3.26628 0.97418 2.40282 2.45907 2.69368 3.05190 3.34465 3.42191 3.43962 3.86957 4.05188 4.12716 4.32134 4.40026 4.46490 4.57295 4.62689 4.78042 4.91479 4.97665 5.03599 5.09716 5.18033 5.34389 5.37014 5.38376 5.41824 5.55494 5.61977 5.65671 5.73712 5.74795 5.79067 5.82701 5.85082 5.94429 6.03043 6.07884 6.18028 6.26712 6.33323 6.46607 6.62662 6.82658 6.85836 7.12745 7.18954 7.46516 7.57229 7.59754 7.65638 7.77248 7.85614 8.41690 9.18241 9.80220 10.39410 11.27295 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.002085 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.261325 B =13426.667084 C =14289.215797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.237 3.763 3 N -0.495 5.495 4 C 0.101 3.899 5 C -0.078 4.078 6 C -0.090 4.090 7 C 0.610 3.390 8 O -0.519 6.519 9 N -0.617 5.617 10 C 0.092 3.908 11 C -0.121 4.121 12 C 0.069 3.931 13 H 0.052 0.948 14 N -0.520 5.520 15 C 0.032 3.968 16 C 0.180 3.820 17 N -0.595 5.595 18 C -0.253 4.253 19 H 0.065 0.935 20 C 0.003 3.997 21 N -0.903 5.903 22 Si 0.904 3.096 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.289 1.289 26 C 0.149 3.851 27 C 0.045 3.955 28 C 0.118 3.882 29 N -0.556 5.556 30 H 0.421 0.579 31 H 0.086 0.914 32 H 0.078 0.922 33 H 0.096 0.904 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.090 0.910 37 H 0.068 0.932 38 H 0.063 0.937 39 H 0.083 0.917 40 H 0.094 0.906 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.028 0.972 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.081 0.919 51 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.470 15.964 -1.027 25.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.026 4.026 3 N -0.216 5.216 4 C -0.034 4.034 5 C -0.135 4.135 6 C -0.205 4.205 7 C 0.399 3.601 8 O -0.395 6.395 9 N -0.352 5.352 10 C -0.032 4.032 11 C -0.159 4.159 12 C -0.041 4.041 13 H 0.070 0.930 14 N -0.245 5.245 15 C -0.097 4.097 16 C 0.053 3.947 17 N -0.319 5.319 18 C -0.383 4.383 19 H 0.083 0.917 20 C -0.196 4.196 21 N -0.548 5.548 22 Si 0.734 3.266 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.216 1.216 26 C 0.022 3.978 27 C -0.085 4.085 28 C -0.004 4.004 29 N -0.166 5.166 30 H 0.265 0.735 31 H 0.105 0.895 32 H 0.096 0.904 33 H 0.115 0.885 34 H 0.093 0.907 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.082 0.918 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.046 0.954 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.099 0.901 51 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges -19.924 17.073 -0.470 26.242 hybrid contribution 0.535 -1.983 -1.396 2.483 sum -19.389 15.089 -1.865 24.640 Atomic orbital electron populations 1.20318 0.84151 1.04634 1.04124 1.23448 0.95890 0.81671 1.01640 1.70104 1.01611 1.28328 1.21600 1.21094 0.93202 0.90174 0.98910 1.20310 0.92998 0.97093 1.03148 1.20802 0.83650 0.95256 1.20761 1.16426 0.87112 0.79732 0.76818 1.90843 1.25942 1.72012 1.50691 1.48314 1.08542 1.04697 1.73640 1.22218 0.87155 0.93471 1.00386 1.22691 0.96648 0.92875 1.03678 1.22741 0.93154 0.91236 0.96933 0.93040 1.62034 1.02724 1.00230 1.59543 1.22982 0.87573 1.01236 0.97902 1.20858 0.95428 0.81492 0.96874 1.44096 1.03275 1.10916 1.73593 1.19203 0.92419 1.04610 1.22056 0.91740 1.25121 0.98568 0.98887 0.97027 1.69998 1.11757 1.43753 1.29247 0.86204 0.80295 0.80584 0.79558 1.20320 1.21555 1.21636 1.20974 0.86052 0.93833 0.96913 1.22645 0.97342 0.90952 0.97517 1.22283 0.88712 0.86728 1.02662 1.43749 1.06062 1.10522 1.56268 0.73546 0.89529 0.90366 0.88549 0.90661 0.90984 0.89162 0.91373 0.91841 0.89852 0.88785 0.95511 0.91851 0.95427 0.89307 0.93585 0.95641 0.92589 0.91901 0.95370 0.90078 0.89673 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.24 2.08 8.12 -155.62 -1.26 0.82 16 3 N -0.50 -5.86 11.20 -6.84 -0.08 -5.94 16 4 C 0.10 1.26 7.15 -82.51 -0.59 0.67 16 5 C -0.08 -0.86 9.88 36.01 0.36 -0.50 16 6 C -0.09 -1.07 6.89 -82.15 -0.57 -1.63 16 7 C 0.61 8.27 7.82 -12.81 -0.10 8.17 16 8 O -0.52 -8.51 15.08 5.21 0.08 -8.44 16 9 N -0.62 -7.27 3.33 -172.01 -0.57 -7.84 16 10 C 0.09 0.74 5.13 -3.06 -0.02 0.72 16 11 C -0.12 -1.10 5.34 -24.88 -0.13 -1.24 16 12 C 0.07 0.88 2.72 -65.55 -0.18 0.70 16 13 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 14 N -0.52 -8.36 4.53 -223.76 -1.01 -9.37 16 15 C 0.03 0.60 5.48 -3.70 -0.02 0.58 16 16 C 0.18 4.22 5.38 -3.60 -0.02 4.20 16 17 N -0.60 -14.67 3.03 -172.02 -0.52 -15.19 16 18 C -0.25 -6.84 9.62 -15.06 -0.14 -6.99 16 19 H 0.06 1.71 7.86 -52.49 -0.41 1.30 16 20 C 0.00 0.07 5.01 -17.43 -0.09 -0.01 16 21 N -0.90 -25.98 11.11 55.49 0.62 -25.36 16 22 Si 0.90 21.49 29.57 -169.99 -5.03 16.46 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 25 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 26 C 0.15 3.01 6.69 -3.60 -0.02 2.98 16 27 C 0.04 0.73 5.48 -3.70 -0.02 0.71 16 28 C 0.12 1.56 5.31 -2.52 -0.01 1.54 16 29 N -0.56 -4.75 5.67 -7.02 -0.04 -4.79 16 30 H 0.42 2.41 5.14 -40.82 -0.21 2.20 16 31 H 0.09 0.26 8.14 -51.93 -0.42 -0.16 16 32 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 33 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 35 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 36 H 0.09 1.09 6.48 -51.93 -0.34 0.75 16 37 H 0.07 0.44 7.32 -51.93 -0.38 0.06 16 38 H 0.06 0.40 7.06 -51.93 -0.37 0.04 16 39 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.49 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.09 6.79 -51.93 -0.35 0.74 16 43 H 0.03 0.70 8.14 -51.93 -0.42 0.28 16 44 H 0.09 2.34 6.20 -51.93 -0.32 2.02 16 45 H 0.25 7.06 8.31 -40.82 -0.34 6.72 16 46 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 47 H 0.06 1.09 7.95 -51.93 -0.41 0.68 16 48 H 0.06 0.83 6.87 -51.93 -0.36 0.47 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 1.16 7.74 -51.93 -0.40 0.76 16 51 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -33.43 394.72 -11.22 -44.65 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.17 Total: -0.92 kcal Atomic # 6 Polarization: 13.22 SS G_CDS: -2.44 Total: 10.78 kcal Atomic # 7 Polarization: -66.89 SS G_CDS: -1.61 Total: -68.49 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.08 Total: -8.44 kcal Atomic # 14 Polarization: 21.49 SS G_CDS: -5.03 Total: 16.46 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.43 -11.22 -44.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052081369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.681 kcal (2) G-P(sol) polarization free energy of solvation -33.431 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.651 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds