Wall clock time and date at job start Wed Apr 1 2020 05:04:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.30856 * 125.41402 * 2 1 4 4 C 1.33326 * 109.68063 * 180.02562 * 3 2 1 5 5 C 1.50704 * 126.10314 * 179.97438 * 4 3 2 6 6 C 1.36660 * 107.78741 * 359.97438 * 4 3 2 7 7 C 1.46759 * 126.84283 * 179.97438 * 6 4 3 8 8 O 1.21682 * 120.00556 * 0.02562 * 7 6 4 9 9 N 1.34782 * 120.00064 * 179.72900 * 7 6 4 10 10 C 1.47020 * 125.64180 * 359.68850 * 9 7 6 11 11 C 1.54341 * 107.26346 * 178.85447 * 10 9 7 12 12 C 1.55165 * 103.01628 * 338.13977 * 11 10 9 13 13 H 1.08995 * 111.03620 * 277.21623 * 12 11 10 14 14 N 1.46903 * 111.00146 * 153.38083 * 12 11 10 15 15 C 1.46902 * 110.99941 * 186.40933 * 14 12 11 16 16 C 1.53237 * 109.33815 * 172.74870 * 15 14 12 17 17 N 1.47079 * 108.52346 * 53.83029 * 16 15 14 18 18 C 1.36936 * 120.88124 * 128.79453 * 17 16 15 19 19 H 1.07999 * 119.99551 * 209.23145 * 18 17 16 20 20 C 1.38813 * 120.00244 * 29.22355 * 18 17 16 21 21 N 1.31621 * 119.99582 * 13.14010 * 20 18 17 22 22 Si 1.86792 * 120.00206 * 193.13031 * 20 18 17 23 23 H 1.48499 * 109.47075 * 0.02562 * 22 20 18 24 24 H 1.48501 * 109.47157 * 120.00382 * 22 20 18 25 25 H 1.48497 * 109.47629 * 240.00406 * 22 20 18 26 26 C 1.47079 * 118.23716 * 308.81650 * 17 16 15 27 27 C 1.46903 * 110.99672 * 62.10813 * 14 12 11 28 28 C 1.47419 * 125.64917 * 180.02562 * 9 7 6 29 29 N 1.34489 * 125.42093 * 180.31643 * 2 1 3 30 30 H 0.97007 * 126.47367 * 359.96320 * 29 2 1 31 31 H 1.08994 * 109.46892 * 89.97768 * 1 2 3 32 32 H 1.09002 * 109.46828 * 209.97375 * 1 2 3 33 33 H 1.09003 * 109.46984 * 329.97442 * 1 2 3 34 34 H 1.08996 * 109.47111 * 269.99635 * 5 4 3 35 35 H 1.09001 * 109.47236 * 30.00123 * 5 4 3 36 36 H 1.09002 * 109.46781 * 150.00157 * 5 4 3 37 37 H 1.09000 * 109.88539 * 298.39310 * 10 9 7 38 38 H 1.09000 * 109.88731 * 59.56704 * 10 9 7 39 39 H 1.09003 * 110.85119 * 219.68043 * 11 10 9 40 40 H 1.08995 * 110.51552 * 96.45002 * 11 10 9 41 41 H 1.08993 * 109.49229 * 292.70854 * 15 14 12 42 42 H 1.08996 * 109.49136 * 52.79095 * 15 14 12 43 43 H 1.09005 * 109.62911 * 294.12033 * 16 15 14 44 44 H 1.08996 * 109.62619 * 173.54228 * 16 15 14 45 45 H 0.97001 * 119.99411 * 179.97438 * 21 20 18 46 46 H 1.08999 * 109.62737 * 291.47027 * 26 17 16 47 47 H 1.08996 * 109.62911 * 170.89733 * 26 17 16 48 48 H 1.08996 * 109.49627 * 307.20979 * 27 14 12 49 49 H 1.08997 * 109.49029 * 67.27185 * 27 14 12 50 50 H 1.08997 * 110.36607 * 322.92591 * 28 9 7 51 51 H 1.08995 * 110.36814 * 85.13886 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0665 0.0000 4 6 3.5487 0.7049 -0.0006 5 6 4.7336 1.6361 -0.0013 6 6 3.5976 -0.6608 -0.0004 7 6 4.8029 -1.4981 -0.0013 8 8 5.9039 -0.9799 -0.0020 9 7 4.6904 -2.8412 0.0046 10 6 3.4283 -3.5952 0.0187 11 6 3.7906 -5.0952 -0.0086 12 6 5.2254 -5.0976 -0.5994 13 1 5.2004 -5.0464 -1.6879 14 7 5.9788 -6.2750 -0.1476 15 6 7.3805 -6.2011 -0.5811 16 6 8.1706 -7.3477 0.0587 17 7 7.4897 -8.6141 -0.2511 18 6 8.1785 -9.6697 -0.7864 19 1 7.6715 -10.3758 -1.4273 20 6 9.5281 -9.8321 -0.5054 21 7 10.0860 -9.1401 0.4653 22 14 10.5524 -11.0327 -1.5046 23 1 9.6953 -11.6810 -2.5295 24 1 11.6579 -10.3020 -2.1747 25 1 11.1183 -12.0693 -0.6045 26 6 6.0495 -8.7165 0.0289 27 6 5.3428 -7.5160 -0.6096 28 6 5.8125 -3.7974 0.0049 29 7 2.2865 -1.0960 -0.0061 30 1 1.9851 -2.0180 -0.0106 31 1 -0.3633 0.0004 -1.0276 32 1 -0.3633 -0.8902 0.5134 33 1 -0.3633 0.8898 0.5142 34 1 5.0188 1.8604 -1.0291 35 1 4.4696 2.5605 0.5125 36 1 5.5694 1.1609 0.5122 37 1 2.8683 -3.3636 0.9247 38 1 2.8358 -3.3428 -0.8607 39 1 3.1072 -5.6477 -0.6535 40 1 3.7884 -5.5072 1.0005 41 1 7.4305 -6.2862 -1.6665 42 1 7.8074 -5.2476 -0.2705 43 1 8.2094 -7.2076 1.1390 44 1 9.1818 -7.3668 -0.3475 45 1 11.0291 -9.2538 0.6619 46 1 5.8845 -8.7080 1.1063 47 1 5.6585 -9.6405 -0.3968 48 1 4.2921 -7.5160 -0.3198 49 1 5.4209 -7.5825 -1.6947 50 1 6.6280 -3.4255 -0.6152 51 1 6.1606 -3.9734 1.0227 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052081369.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:51 Heat of formation + Delta-G solvation = 41.938235 kcal Electronic energy + Delta-G solvation = -31054.238442 eV Core-core repulsion = 26989.502992 eV Total energy + Delta-G solvation = -4064.735451 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -43.42744 -41.13419 -39.75656 -38.23942 -35.95998 -34.50843 -33.56403 -33.03798 -32.15083 -31.30153 -30.16160 -29.88900 -28.19159 -27.21681 -25.10126 -24.63144 -23.76920 -22.38527 -22.23470 -21.56165 -20.83534 -20.47606 -18.85396 -18.75471 -17.73563 -17.37018 -16.98085 -16.82397 -16.52344 -15.91692 -15.67301 -15.47650 -15.31260 -15.17176 -15.03553 -14.85998 -14.68682 -14.18666 -14.13121 -13.95973 -13.87636 -13.67199 -13.30515 -13.24468 -13.18069 -13.13249 -13.05711 -12.76535 -12.61085 -12.54363 -12.23329 -12.02977 -11.97779 -11.82204 -11.58154 -11.45784 -11.38654 -11.08108 -11.02162 -10.61786 -10.00760 -9.41313 -9.34590 -8.65832 -7.88470 -5.36816 0.13229 1.44625 1.46240 1.54634 1.56537 1.67979 1.93509 2.11906 2.48990 2.91145 3.17820 3.28096 3.32013 3.49996 3.62141 3.68501 3.92828 3.95750 4.05205 4.08851 4.18394 4.31086 4.32100 4.36194 4.49808 4.53329 4.60595 4.65678 4.67459 4.69418 4.74596 4.77597 4.79607 4.87706 4.89763 4.95156 5.00759 5.03446 5.08378 5.14588 5.15997 5.21819 5.37635 5.50221 5.60836 5.67758 6.09354 6.18740 6.23657 6.27414 6.38012 6.81221 6.89362 7.12904 7.83134 8.37553 9.18152 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.025304 B = 0.002085 C = 0.001959 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1106.261325 B =13426.667084 C =14289.215797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.252 3.748 3 N -0.528 5.528 4 C 0.083 3.917 5 C -0.075 4.075 6 C -0.105 4.105 7 C 0.605 3.395 8 O -0.562 6.562 9 N -0.616 5.616 10 C 0.088 3.912 11 C -0.110 4.110 12 C 0.072 3.928 13 H 0.054 0.946 14 N -0.525 5.525 15 C 0.050 3.950 16 C 0.188 3.812 17 N -0.615 5.615 18 C -0.260 4.260 19 H 0.069 0.931 20 C -0.053 4.053 21 N -0.937 5.937 22 Si 0.969 3.031 23 H -0.265 1.265 24 H -0.292 1.292 25 H -0.292 1.292 26 C 0.143 3.857 27 C 0.058 3.942 28 C 0.121 3.879 29 N -0.543 5.543 30 H 0.436 0.564 31 H 0.104 0.896 32 H 0.108 0.892 33 H 0.099 0.901 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.074 0.926 37 H 0.092 0.908 38 H 0.090 0.910 39 H 0.113 0.887 40 H 0.093 0.907 41 H 0.019 0.981 42 H 0.072 0.928 43 H -0.001 1.001 44 H 0.053 0.947 45 H 0.249 0.751 46 H 0.018 0.982 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.024 0.976 50 H 0.061 0.939 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.682 15.730 -1.945 29.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.012 4.012 3 N -0.250 5.250 4 C -0.052 4.052 5 C -0.133 4.133 6 C -0.221 4.221 7 C 0.396 3.604 8 O -0.441 6.441 9 N -0.349 5.349 10 C -0.034 4.034 11 C -0.148 4.148 12 C -0.037 4.037 13 H 0.072 0.928 14 N -0.251 5.251 15 C -0.079 4.079 16 C 0.062 3.938 17 N -0.340 5.340 18 C -0.391 4.391 19 H 0.086 0.914 20 C -0.249 4.249 21 N -0.583 5.583 22 Si 0.797 3.203 23 H -0.189 1.189 24 H -0.219 1.219 25 H -0.219 1.219 26 C 0.017 3.983 27 C -0.071 4.071 28 C -0.002 4.002 29 N -0.154 5.154 30 H 0.282 0.718 31 H 0.122 0.878 32 H 0.126 0.874 33 H 0.117 0.883 34 H 0.095 0.905 35 H 0.100 0.900 36 H 0.093 0.907 37 H 0.110 0.890 38 H 0.108 0.892 39 H 0.132 0.868 40 H 0.111 0.889 41 H 0.038 0.962 42 H 0.091 0.909 43 H 0.017 0.983 44 H 0.071 0.929 45 H 0.059 0.941 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.042 0.958 50 H 0.079 0.921 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges -24.217 16.801 -1.396 29.507 hybrid contribution 1.737 -1.885 -1.065 2.775 sum -22.480 14.916 -2.461 27.090 Atomic orbital electron populations 1.20588 0.80597 1.06273 1.05707 1.24348 0.97523 0.80859 0.98484 1.70122 1.01488 1.29999 1.23377 1.21336 0.93897 0.90799 0.99149 1.20256 0.92496 0.97337 1.03184 1.20482 0.84376 0.94840 1.22359 1.16688 0.87167 0.80251 0.76321 1.90815 1.27597 1.72927 1.52733 1.48320 1.09578 1.04188 1.72831 1.22500 0.85822 0.92217 1.02889 1.22708 0.94196 0.93933 1.03947 1.22733 0.94935 0.88942 0.97135 0.92792 1.61927 1.01521 1.01755 1.59863 1.22576 0.89269 0.99342 0.96731 1.20557 0.94787 0.83315 0.95133 1.44386 1.05126 1.10694 1.73750 1.19549 0.92919 1.04897 1.21703 0.91374 1.25896 0.99804 1.00947 0.98212 1.70168 1.11596 1.45566 1.30996 0.85184 0.78564 0.78352 0.78212 1.18891 1.21886 1.21894 1.21172 0.83843 0.96367 0.96905 1.22497 0.98874 0.88989 0.96760 1.22100 0.89109 0.87587 1.01447 1.43628 1.04610 1.11359 1.55777 0.71806 0.87787 0.87388 0.88260 0.90452 0.89980 0.90737 0.88983 0.89162 0.86825 0.88851 0.96249 0.90923 0.98336 0.92901 0.94142 0.96394 0.91931 0.87493 0.95787 0.92086 0.91120 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.30 10.51 71.24 0.75 0.45 16 2 C 0.25 3.66 8.12 138.20 1.12 4.78 16 3 N -0.53 -11.73 11.20 -175.56 -1.97 -13.69 16 4 C 0.08 2.04 7.15 41.96 0.30 2.34 16 5 C -0.08 -1.72 9.88 71.24 0.70 -1.01 16 6 C -0.11 -2.38 6.89 40.01 0.28 -2.10 16 7 C 0.61 16.26 7.82 86.47 0.68 16.93 16 8 O -0.56 -19.23 15.08 -4.29 -0.06 -19.30 16 9 N -0.62 -13.57 3.33 -816.34 -2.71 -16.28 16 10 C 0.09 1.06 5.13 86.74 0.44 1.51 16 11 C -0.11 -1.52 5.34 31.79 0.17 -1.35 16 12 C 0.07 1.65 2.72 46.32 0.13 1.78 16 13 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 14 N -0.53 -16.15 4.53 -861.86 -3.90 -20.05 16 15 C 0.05 1.91 5.48 86.38 0.47 2.38 16 16 C 0.19 9.25 5.38 86.35 0.46 9.71 16 17 N -0.62 -30.83 3.03 -698.14 -2.12 -32.94 16 18 C -0.26 -14.26 9.62 84.03 0.81 -13.45 16 19 H 0.07 3.61 7.86 -2.91 -0.02 3.58 16 20 C -0.05 -3.00 5.01 84.86 0.43 -2.57 16 21 N -0.94 -56.05 11.11 21.65 0.24 -55.81 16 22 Si 0.97 44.99 29.57 68.60 2.03 47.02 16 23 H -0.26 -11.57 7.11 99.48 0.71 -10.86 16 24 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 25 H -0.29 -13.57 7.11 99.48 0.71 -12.87 16 26 C 0.14 5.62 6.69 86.35 0.58 6.20 16 27 C 0.06 1.72 5.48 86.38 0.47 2.19 16 28 C 0.12 3.12 5.31 86.86 0.46 3.58 16 29 N -0.54 -7.54 5.67 -176.12 -1.00 -8.54 16 30 H 0.44 3.00 5.14 -92.70 -0.48 2.52 16 31 H 0.10 0.15 8.14 -2.39 -0.02 0.13 16 32 H 0.11 -0.16 8.14 -2.39 -0.02 -0.18 16 33 H 0.10 0.42 8.14 -2.39 -0.02 0.40 16 34 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.08 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.07 1.92 6.48 -2.39 -0.02 1.91 16 37 H 0.09 0.74 7.32 -2.39 -0.02 0.72 16 38 H 0.09 0.67 7.06 -2.39 -0.02 0.65 16 39 H 0.11 0.98 7.94 -2.39 -0.02 0.96 16 40 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 41 H 0.02 0.76 8.14 -2.39 -0.02 0.74 16 42 H 0.07 2.59 6.79 -2.39 -0.02 2.58 16 43 H 0.00 -0.08 8.14 -2.38 -0.02 -0.10 16 44 H 0.05 2.95 6.20 -2.39 -0.01 2.94 16 45 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.34 7.95 -2.39 -0.02 2.33 16 48 H 0.11 2.29 6.87 -2.39 -0.02 2.28 16 49 H 0.02 0.75 8.14 -2.39 -0.02 0.73 16 50 H 0.06 1.81 7.74 -2.39 -0.02 1.79 16 51 H 0.07 2.03 8.14 -2.39 -0.02 2.01 16 Total: -1.00 -77.80 394.72 -0.78 -78.58 By element: Atomic # 1 Polarization: 9.19 SS G_CDS: 0.46 Total: 9.66 kcal Atomic # 6 Polarization: 23.12 SS G_CDS: 8.25 Total: 31.37 kcal Atomic # 7 Polarization: -135.87 SS G_CDS: -11.46 Total: -147.33 kcal Atomic # 8 Polarization: -19.23 SS G_CDS: -0.06 Total: -19.30 kcal Atomic # 14 Polarization: 44.99 SS G_CDS: 2.03 Total: 47.02 kcal Total: -77.80 -0.78 -78.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052081369.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.515 kcal (2) G-P(sol) polarization free energy of solvation -77.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.715 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.777 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.577 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.938 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds