Wall clock time and date at job start Wed Apr 1 2020 05:04:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30853 * 125.41901 * 2 1 4 4 C 1.33318 * 109.68404 * 179.77948 * 3 2 1 5 5 C 1.50707 * 126.10931 * 180.27241 * 4 3 2 6 6 C 1.36666 * 107.78813 * 0.37963 * 4 3 2 7 7 C 1.46763 * 126.84775 * 179.89465 * 6 4 3 8 8 O 1.21681 * 119.99683 * 359.71182 * 7 6 4 9 9 N 1.34773 * 120.00017 * 179.70292 * 7 6 4 10 10 C 1.47185 * 125.73574 * 359.86586 * 9 7 6 11 11 C 1.54323 * 107.29473 * 181.02295 * 10 9 7 12 12 C 1.55164 * 102.93821 * 22.28618 * 11 10 9 13 13 H 1.08993 * 111.03753 * 82.58908 * 12 11 10 14 14 N 1.46906 * 111.00115 * 206.42341 * 12 11 10 15 15 C 1.46902 * 110.99662 * 297.95175 * 14 12 11 16 16 C 1.53245 * 109.33778 * 172.75173 * 15 14 12 17 17 N 1.47071 * 108.52463 * 53.82705 * 16 15 14 18 18 C 1.36939 * 120.88541 * 128.83778 * 17 16 15 19 19 H 1.07994 * 120.00256 * 206.61878 * 18 17 16 20 20 C 1.38815 * 119.99621 * 26.61879 * 18 17 16 21 21 N 1.31622 * 119.99689 * 17.05249 * 20 18 17 22 22 Si 1.86790 * 119.99964 * 197.04986 * 20 18 17 23 23 H 1.48502 * 109.47281 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47050 * 120.00192 * 22 20 18 25 25 H 1.48496 * 109.47632 * 240.00091 * 22 20 18 26 26 C 1.47085 * 118.23698 * 308.81631 * 17 16 15 27 27 C 1.46896 * 110.99878 * 173.65334 * 14 12 11 28 28 C 1.47422 * 125.64738 * 179.97438 * 9 7 6 29 29 N 1.34492 * 125.41404 * 180.02562 * 2 1 3 30 30 H 0.96999 * 126.47651 * 359.97438 * 29 2 1 31 31 H 1.08995 * 109.47424 * 269.97974 * 1 2 3 32 32 H 1.09002 * 109.46783 * 29.97981 * 1 2 3 33 33 H 1.08998 * 109.46868 * 149.97563 * 1 2 3 34 34 H 1.09003 * 109.47157 * 270.12443 * 5 4 3 35 35 H 1.08995 * 109.46378 * 30.12295 * 5 4 3 36 36 H 1.08998 * 109.46648 * 150.11974 * 5 4 3 37 37 H 1.09007 * 109.79655 * 61.64458 * 10 9 7 38 38 H 1.08991 * 110.07504 * 300.56364 * 10 9 7 39 39 H 1.09001 * 110.72284 * 263.92623 * 11 10 9 40 40 H 1.09001 * 110.87528 * 140.71610 * 11 10 9 41 41 H 1.09007 * 109.49539 * 292.70332 * 15 14 12 42 42 H 1.08994 * 109.49977 * 52.78728 * 15 14 12 43 43 H 1.09003 * 109.62410 * 294.11231 * 16 15 14 44 44 H 1.09001 * 109.78768 * 173.63350 * 16 15 14 45 45 H 0.97000 * 119.99526 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.63104 * 291.47637 * 26 17 16 47 47 H 1.09002 * 109.79181 * 170.98692 * 26 17 16 48 48 H 1.08999 * 109.49381 * 307.20779 * 27 14 12 49 49 H 1.08997 * 109.49762 * 67.29268 * 27 14 12 50 50 H 1.08995 * 110.36866 * 36.99699 * 28 9 7 51 51 H 1.09001 * 110.36584 * 274.78554 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0048 5 6 4.7337 1.6359 0.0123 6 6 3.5976 -0.6609 -0.0006 7 6 4.8028 -1.4984 -0.0003 8 8 5.9038 -0.9801 -0.0001 9 7 4.6902 -2.8414 -0.0001 10 6 3.4278 -3.5982 0.0027 11 6 3.7919 -5.0977 0.0282 12 6 5.2296 -5.0962 0.6118 13 1 5.2100 -5.0410 1.7001 14 7 5.9821 -6.2745 0.1606 15 6 5.3491 -7.5145 0.6291 16 6 6.0540 -8.7165 -0.0086 17 7 7.4953 -8.6121 0.2651 18 6 8.1873 -9.6658 0.8001 19 1 9.0788 -9.4863 1.3827 20 6 7.7429 -10.9645 0.5936 21 7 6.8801 -11.2199 -0.3671 22 14 8.3692 -12.3497 1.6790 23 1 9.3234 -11.8036 2.6773 24 1 7.2252 -12.9828 2.3832 25 1 9.0565 -13.3640 0.8400 26 6 8.1738 -7.3462 -0.0515 27 6 7.3855 -6.1982 0.5880 28 6 5.8122 -3.7977 -0.0003 29 7 2.2864 -1.0961 -0.0005 30 1 1.9849 -2.0180 -0.0006 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 5.0225 1.8645 -1.0136 35 1 4.4678 2.5580 0.5290 36 1 5.5675 1.1584 0.5268 37 1 2.8587 -3.3702 -0.8986 38 1 2.8412 -3.3441 0.8855 39 1 3.7851 -5.5134 -0.9794 40 1 3.1130 -5.6512 0.6768 41 1 5.4321 -7.5779 1.7142 42 1 4.2972 -7.5163 0.3437 43 1 5.8844 -8.7115 -1.0853 44 1 5.6662 -9.6412 0.4188 45 1 6.5699 -12.1275 -0.5116 46 1 8.2081 -7.2094 -1.1323 47 1 9.1879 -7.3610 0.3480 48 1 7.8104 -5.2453 0.2726 49 1 7.4401 -6.2798 1.6735 50 1 6.6305 -3.4226 0.6143 51 1 6.1559 -3.9790 -1.0187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052081371.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:57 Heat of formation + Delta-G solvation = 65.307732 kcal Electronic energy + Delta-G solvation = -31034.274834 eV Core-core repulsion = 26970.552761 eV Total energy + Delta-G solvation = -4063.722073 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -42.66620 -40.14471 -38.49717 -36.97917 -34.44144 -33.63360 -32.62467 -31.69149 -30.54820 -30.20601 -29.49452 -28.69340 -27.05603 -25.84331 -23.95756 -22.99563 -22.47987 -21.53386 -21.39309 -20.45511 -19.69739 -19.22397 -17.91539 -17.21515 -16.58058 -16.44103 -16.08580 -15.62373 -15.03481 -14.68540 -14.41531 -14.25627 -14.13780 -14.08972 -13.58662 -13.48771 -13.47070 -13.42403 -13.25366 -12.93682 -12.86183 -12.76261 -12.65016 -12.48119 -12.30348 -11.99205 -11.40992 -11.32967 -11.13698 -11.06768 -10.79718 -10.68838 -10.48938 -10.35392 -10.31158 -10.13173 -10.08755 -9.79490 -9.65566 -9.07738 -8.61407 -8.56273 -7.99859 -6.72215 -5.83235 -3.24122 0.96327 2.39324 2.45051 2.68102 3.03617 3.33400 3.41773 3.43847 3.86455 4.05335 4.11669 4.32279 4.39912 4.46179 4.58339 4.62745 4.77104 4.91714 4.98022 5.03261 5.09377 5.17657 5.34348 5.34657 5.37488 5.41274 5.56917 5.60101 5.64786 5.72780 5.73990 5.77886 5.80498 5.84918 5.93646 6.05818 6.07016 6.14676 6.25287 6.31985 6.45364 6.61464 6.82147 6.87162 7.10982 7.16603 7.45503 7.54292 7.58933 7.61893 7.76537 7.83452 8.38450 9.16485 9.79608 10.37684 11.25728 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.002051 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.981831 B =13649.260084 C =14437.060115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.238 3.762 3 N -0.495 5.495 4 C 0.101 3.899 5 C -0.077 4.077 6 C -0.090 4.090 7 C 0.611 3.389 8 O -0.521 6.521 9 N -0.617 5.617 10 C 0.092 3.908 11 C -0.121 4.121 12 C 0.069 3.931 13 H 0.052 0.948 14 N -0.520 5.520 15 C 0.036 3.964 16 C 0.178 3.822 17 N -0.596 5.596 18 C -0.251 4.251 19 H 0.067 0.933 20 C 0.000 4.000 21 N -0.903 5.903 22 Si 0.902 3.098 23 H -0.278 1.278 24 H -0.289 1.289 25 H -0.290 1.290 26 C 0.149 3.851 27 C 0.041 3.959 28 C 0.118 3.882 29 N -0.556 5.556 30 H 0.421 0.579 31 H 0.086 0.914 32 H 0.096 0.904 33 H 0.078 0.922 34 H 0.075 0.925 35 H 0.071 0.929 36 H 0.089 0.911 37 H 0.068 0.932 38 H 0.065 0.935 39 H 0.094 0.906 40 H 0.084 0.916 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.089 0.911 45 H 0.253 0.747 46 H 0.026 0.974 47 H 0.057 0.943 48 H 0.064 0.936 49 H 0.030 0.970 50 H 0.080 0.920 51 H 0.084 0.916 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.271 20.091 0.941 24.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C -0.026 4.026 3 N -0.217 5.217 4 C -0.034 4.034 5 C -0.135 4.135 6 C -0.205 4.205 7 C 0.400 3.600 8 O -0.397 6.397 9 N -0.352 5.352 10 C -0.032 4.032 11 C -0.159 4.159 12 C -0.041 4.041 13 H 0.070 0.930 14 N -0.245 5.245 15 C -0.093 4.093 16 C 0.052 3.948 17 N -0.319 5.319 18 C -0.380 4.380 19 H 0.084 0.916 20 C -0.198 4.198 21 N -0.548 5.548 22 Si 0.732 3.268 23 H -0.203 1.203 24 H -0.216 1.216 25 H -0.217 1.217 26 C 0.022 3.978 27 C -0.088 4.088 28 C -0.004 4.004 29 N -0.166 5.166 30 H 0.265 0.735 31 H 0.105 0.895 32 H 0.115 0.885 33 H 0.097 0.903 34 H 0.094 0.906 35 H 0.090 0.910 36 H 0.108 0.892 37 H 0.086 0.914 38 H 0.083 0.917 39 H 0.113 0.887 40 H 0.103 0.897 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.108 0.892 45 H 0.063 0.937 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.048 0.952 50 H 0.098 0.902 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -13.958 21.052 0.385 25.262 hybrid contribution 0.178 -2.184 1.391 2.596 sum -13.780 18.868 1.777 23.432 Atomic orbital electron populations 1.20322 0.84134 1.04652 1.04152 1.23451 0.95900 0.81654 1.01566 1.70100 1.01603 1.28335 1.21621 1.21093 0.93211 0.90164 0.98927 1.20305 0.92961 0.97074 1.03164 1.20798 0.83662 0.95245 1.20826 1.16417 0.87110 0.79709 0.76764 1.90835 1.25965 1.72028 1.50850 1.48344 1.08582 1.04667 1.73583 1.22244 0.87081 0.93438 1.00454 1.22683 0.96579 0.92771 1.03863 1.22747 0.93319 0.91075 0.96941 0.93024 1.62035 1.02250 1.00681 1.59570 1.22924 0.97807 0.90955 0.97583 1.20866 0.83031 0.93814 0.97102 1.44133 1.04042 1.10257 1.73449 1.19239 1.09275 0.84787 1.24711 0.91570 1.25027 1.00033 0.97344 0.97399 1.70035 1.35524 1.19386 1.29881 0.86226 0.78123 0.82276 0.80175 1.20306 1.21596 1.21692 1.20970 0.94284 0.85671 0.96850 1.22687 0.88315 0.99951 0.97862 1.22280 0.88750 0.86854 1.02515 1.43753 1.06061 1.10545 1.56218 0.73517 0.89496 0.88549 0.90343 0.90631 0.91003 0.89229 0.91398 0.91736 0.88697 0.89735 0.95593 0.91944 0.95540 0.89246 0.93670 0.95577 0.92499 0.91754 0.95213 0.90199 0.89760 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.31 10.51 36.01 0.38 0.07 16 2 C 0.24 2.09 8.12 -155.62 -1.26 0.82 16 3 N -0.50 -5.83 11.20 -6.84 -0.08 -5.90 16 4 C 0.10 1.24 7.15 -82.51 -0.59 0.65 16 5 C -0.08 -0.83 9.88 36.01 0.36 -0.48 16 6 C -0.09 -1.06 6.90 -82.14 -0.57 -1.63 16 7 C 0.61 8.10 7.82 -12.82 -0.10 8.00 16 8 O -0.52 -8.29 15.08 5.21 0.08 -8.21 16 9 N -0.62 -7.13 3.33 -171.89 -0.57 -7.70 16 10 C 0.09 0.75 5.13 -2.98 -0.02 0.74 16 11 C -0.12 -1.16 5.35 -24.89 -0.13 -1.29 16 12 C 0.07 0.87 2.72 -65.55 -0.18 0.69 16 13 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 14 N -0.52 -8.33 4.53 -223.76 -1.01 -9.34 16 15 C 0.04 0.64 5.48 -3.70 -0.02 0.62 16 16 C 0.18 4.09 5.42 -3.60 -0.02 4.07 16 17 N -0.60 -14.65 3.04 -172.01 -0.52 -15.17 16 18 C -0.25 -6.77 9.63 -15.06 -0.15 -6.91 16 19 H 0.07 1.77 7.88 -52.49 -0.41 1.35 16 20 C 0.00 0.01 4.93 -17.43 -0.09 -0.08 16 21 N -0.90 -25.69 11.15 55.49 0.62 -25.07 16 22 Si 0.90 21.35 29.59 -169.99 -5.03 16.32 16 23 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 24 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 25 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 26 C 0.15 3.07 6.69 -3.60 -0.02 3.05 16 27 C 0.04 0.70 5.48 -3.70 -0.02 0.68 16 28 C 0.12 1.49 5.31 -2.52 -0.01 1.48 16 29 N -0.56 -4.75 5.67 -7.02 -0.04 -4.79 16 30 H 0.42 2.45 5.14 -40.82 -0.21 2.24 16 31 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 32 H 0.10 0.38 8.14 -51.93 -0.42 -0.04 16 33 H 0.08 0.17 8.14 -51.93 -0.42 -0.26 16 34 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 35 H 0.07 0.67 8.14 -51.93 -0.42 0.25 16 36 H 0.09 1.05 6.49 -51.93 -0.34 0.71 16 37 H 0.07 0.45 7.26 -51.93 -0.38 0.07 16 38 H 0.06 0.42 7.13 -51.93 -0.37 0.05 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.70 7.93 -51.93 -0.41 0.29 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.96 6.87 -51.93 -0.36 0.60 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 2.29 6.11 -51.93 -0.32 1.97 16 45 H 0.25 6.94 8.31 -40.82 -0.34 6.61 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.14 7.96 -51.93 -0.41 0.73 16 48 H 0.06 0.96 6.79 -51.93 -0.35 0.61 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.11 16 50 H 0.08 1.07 7.74 -51.93 -0.40 0.67 16 51 H 0.08 1.14 8.14 -51.93 -0.42 0.71 16 LS Contribution 394.72 15.07 5.95 5.95 Total: -1.00 -33.14 394.72 -11.22 -44.36 By element: Atomic # 1 Polarization: 7.25 SS G_CDS: -8.17 Total: -0.92 kcal Atomic # 6 Polarization: 12.92 SS G_CDS: -2.44 Total: 10.48 kcal Atomic # 7 Polarization: -66.37 SS G_CDS: -1.61 Total: -67.97 kcal Atomic # 8 Polarization: -8.29 SS G_CDS: 0.08 Total: -8.21 kcal Atomic # 14 Polarization: 21.35 SS G_CDS: -5.03 Total: 16.32 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -33.14 -11.22 -44.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052081371.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.667 kcal (2) G-P(sol) polarization free energy of solvation -33.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 76.525 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.217 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.308 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds