Wall clock time and date at job start Wed Apr 1 2020 05:04:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 N 1.30853 * 125.41901 * 2 1 4 4 C 1.33318 * 109.68404 * 179.77948 * 3 2 1 5 5 C 1.50707 * 126.10931 * 180.27241 * 4 3 2 6 6 C 1.36666 * 107.78813 * 0.37963 * 4 3 2 7 7 C 1.46763 * 126.84775 * 179.89465 * 6 4 3 8 8 O 1.21681 * 119.99683 * 359.71182 * 7 6 4 9 9 N 1.34773 * 120.00017 * 179.70292 * 7 6 4 10 10 C 1.47185 * 125.73574 * 359.86586 * 9 7 6 11 11 C 1.54323 * 107.29473 * 181.02295 * 10 9 7 12 12 C 1.55164 * 102.93821 * 22.28618 * 11 10 9 13 13 H 1.08993 * 111.03753 * 82.58908 * 12 11 10 14 14 N 1.46906 * 111.00115 * 206.42341 * 12 11 10 15 15 C 1.46902 * 110.99662 * 297.95175 * 14 12 11 16 16 C 1.53245 * 109.33778 * 172.75173 * 15 14 12 17 17 N 1.47071 * 108.52463 * 53.82705 * 16 15 14 18 18 C 1.36939 * 120.88541 * 128.83778 * 17 16 15 19 19 H 1.07994 * 120.00256 * 206.61878 * 18 17 16 20 20 C 1.38815 * 119.99621 * 26.61879 * 18 17 16 21 21 N 1.31622 * 119.99689 * 17.05249 * 20 18 17 22 22 Si 1.86790 * 119.99964 * 197.04986 * 20 18 17 23 23 H 1.48502 * 109.47281 * 0.02562 * 22 20 18 24 24 H 1.48509 * 109.47050 * 120.00192 * 22 20 18 25 25 H 1.48496 * 109.47632 * 240.00091 * 22 20 18 26 26 C 1.47085 * 118.23698 * 308.81631 * 17 16 15 27 27 C 1.46896 * 110.99878 * 173.65334 * 14 12 11 28 28 C 1.47422 * 125.64738 * 179.97438 * 9 7 6 29 29 N 1.34492 * 125.41404 * 180.02562 * 2 1 3 30 30 H 0.96999 * 126.47651 * 359.97438 * 29 2 1 31 31 H 1.08995 * 109.47424 * 269.97974 * 1 2 3 32 32 H 1.09002 * 109.46783 * 29.97981 * 1 2 3 33 33 H 1.08998 * 109.46868 * 149.97563 * 1 2 3 34 34 H 1.09003 * 109.47157 * 270.12443 * 5 4 3 35 35 H 1.08995 * 109.46378 * 30.12295 * 5 4 3 36 36 H 1.08998 * 109.46648 * 150.11974 * 5 4 3 37 37 H 1.09007 * 109.79655 * 61.64458 * 10 9 7 38 38 H 1.08991 * 110.07504 * 300.56364 * 10 9 7 39 39 H 1.09001 * 110.72284 * 263.92623 * 11 10 9 40 40 H 1.09001 * 110.87528 * 140.71610 * 11 10 9 41 41 H 1.09007 * 109.49539 * 292.70332 * 15 14 12 42 42 H 1.08994 * 109.49977 * 52.78728 * 15 14 12 43 43 H 1.09003 * 109.62410 * 294.11231 * 16 15 14 44 44 H 1.09001 * 109.78768 * 173.63350 * 16 15 14 45 45 H 0.97000 * 119.99526 * 179.97438 * 21 20 18 46 46 H 1.09000 * 109.63104 * 291.47637 * 26 17 16 47 47 H 1.09002 * 109.79181 * 170.98692 * 26 17 16 48 48 H 1.08999 * 109.49381 * 307.20779 * 27 14 12 49 49 H 1.08997 * 109.49762 * 67.29268 * 27 14 12 50 50 H 1.08995 * 110.36866 * 36.99699 * 28 9 7 51 51 H 1.09001 * 110.36584 * 274.78554 * 28 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2654 1.0664 0.0000 4 6 3.5486 0.7048 0.0048 5 6 4.7337 1.6359 0.0123 6 6 3.5976 -0.6609 -0.0006 7 6 4.8028 -1.4984 -0.0003 8 8 5.9038 -0.9801 -0.0001 9 7 4.6902 -2.8414 -0.0001 10 6 3.4278 -3.5982 0.0027 11 6 3.7919 -5.0977 0.0282 12 6 5.2296 -5.0962 0.6118 13 1 5.2100 -5.0410 1.7001 14 7 5.9821 -6.2745 0.1606 15 6 5.3491 -7.5145 0.6291 16 6 6.0540 -8.7165 -0.0086 17 7 7.4953 -8.6121 0.2651 18 6 8.1873 -9.6658 0.8001 19 1 9.0788 -9.4863 1.3827 20 6 7.7429 -10.9645 0.5936 21 7 6.8801 -11.2199 -0.3671 22 14 8.3692 -12.3497 1.6790 23 1 9.3234 -11.8036 2.6773 24 1 7.2252 -12.9828 2.3832 25 1 9.0565 -13.3640 0.8400 26 6 8.1738 -7.3462 -0.0515 27 6 7.3855 -6.1982 0.5880 28 6 5.8122 -3.7977 -0.0003 29 7 2.2864 -1.0961 -0.0005 30 1 1.9849 -2.0180 -0.0006 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8902 -0.5135 33 1 -0.3633 -0.8898 -0.5142 34 1 5.0225 1.8645 -1.0136 35 1 4.4678 2.5580 0.5290 36 1 5.5675 1.1584 0.5268 37 1 2.8587 -3.3702 -0.8986 38 1 2.8412 -3.3441 0.8855 39 1 3.7851 -5.5134 -0.9794 40 1 3.1130 -5.6512 0.6768 41 1 5.4321 -7.5779 1.7142 42 1 4.2972 -7.5163 0.3437 43 1 5.8844 -8.7115 -1.0853 44 1 5.6662 -9.6412 0.4188 45 1 6.5699 -12.1275 -0.5116 46 1 8.2081 -7.2094 -1.1323 47 1 9.1879 -7.3610 0.3480 48 1 7.8104 -5.2453 0.2726 49 1 7.4401 -6.2798 1.6735 50 1 6.6305 -3.4226 0.6143 51 1 6.1559 -3.9790 -1.0187 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052081371.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:04:56 Heat of formation + Delta-G solvation = 42.839397 kcal Electronic energy + Delta-G solvation = -31035.249134 eV Core-core repulsion = 26970.552761 eV Total energy + Delta-G solvation = -4064.696373 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.42267 -41.12735 -39.75625 -38.23480 -35.96070 -34.50455 -33.57281 -33.07900 -31.87655 -31.60928 -30.13944 -29.81062 -28.20954 -27.21461 -25.14914 -24.56809 -23.79479 -22.38117 -22.23481 -21.56251 -20.83281 -20.47786 -18.89049 -18.71851 -17.71737 -17.37735 -16.97224 -16.87667 -16.47361 -15.91077 -15.66072 -15.49850 -15.29024 -15.18894 -15.05790 -14.83027 -14.70926 -14.18239 -14.11863 -13.96855 -13.87386 -13.66360 -13.34095 -13.30331 -13.24357 -13.06391 -13.00204 -12.75855 -12.62862 -12.54185 -12.19414 -12.02986 -11.98129 -11.85097 -11.57979 -11.45895 -11.38937 -11.07988 -11.01586 -10.60056 -10.00236 -9.40895 -9.35001 -8.69235 -7.88994 -5.33021 0.13702 1.44928 1.47163 1.55080 1.57470 1.68101 1.93543 2.12593 2.49735 2.90338 3.17303 3.26427 3.32068 3.49452 3.62034 3.67618 3.91913 3.95239 4.05161 4.09579 4.17454 4.29411 4.33471 4.33856 4.50340 4.54315 4.59276 4.65315 4.66923 4.68059 4.74194 4.78449 4.80077 4.86305 4.91033 4.94368 4.99843 5.02126 5.08411 5.13792 5.16145 5.18734 5.36680 5.50979 5.60920 5.70273 6.09234 6.18886 6.22428 6.26499 6.36907 6.81342 6.89729 7.13148 7.83200 8.36687 9.17833 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.026686 B = 0.002051 C = 0.001939 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1048.981831 B =13649.260084 C =14437.060115 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.252 3.748 3 N -0.528 5.528 4 C 0.083 3.917 5 C -0.074 4.074 6 C -0.106 4.106 7 C 0.607 3.393 8 O -0.559 6.559 9 N -0.616 5.616 10 C 0.090 3.910 11 C -0.114 4.114 12 C 0.071 3.929 13 H 0.054 0.946 14 N -0.525 5.525 15 C 0.055 3.945 16 C 0.184 3.816 17 N -0.615 5.615 18 C -0.262 4.262 19 H 0.065 0.935 20 C -0.050 4.050 21 N -0.933 5.933 22 Si 0.967 3.033 23 H -0.269 1.269 24 H -0.287 1.287 25 H -0.293 1.293 26 C 0.145 3.855 27 C 0.054 3.946 28 C 0.123 3.877 29 N -0.544 5.544 30 H 0.435 0.565 31 H 0.104 0.896 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.077 0.923 35 H 0.081 0.919 36 H 0.075 0.925 37 H 0.091 0.909 38 H 0.090 0.910 39 H 0.090 0.910 40 H 0.106 0.894 41 H 0.020 0.980 42 H 0.093 0.907 43 H 0.000 1.000 44 H 0.058 0.942 45 H 0.251 0.749 46 H 0.016 0.984 47 H 0.057 0.943 48 H 0.087 0.913 49 H 0.024 0.976 50 H 0.068 0.932 51 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.847 20.868 1.747 26.877 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.013 4.013 3 N -0.250 5.250 4 C -0.052 4.052 5 C -0.132 4.132 6 C -0.221 4.221 7 C 0.398 3.602 8 O -0.438 6.438 9 N -0.350 5.350 10 C -0.032 4.032 11 C -0.152 4.152 12 C -0.038 4.038 13 H 0.072 0.928 14 N -0.251 5.251 15 C -0.074 4.074 16 C 0.058 3.942 17 N -0.339 5.339 18 C -0.393 4.393 19 H 0.082 0.918 20 C -0.246 4.246 21 N -0.580 5.580 22 Si 0.795 3.205 23 H -0.194 1.194 24 H -0.214 1.214 25 H -0.220 1.220 26 C 0.019 3.981 27 C -0.076 4.076 28 C 0.000 4.000 29 N -0.155 5.155 30 H 0.281 0.719 31 H 0.122 0.878 32 H 0.118 0.882 33 H 0.125 0.875 34 H 0.096 0.904 35 H 0.100 0.900 36 H 0.094 0.906 37 H 0.109 0.891 38 H 0.108 0.892 39 H 0.108 0.892 40 H 0.125 0.875 41 H 0.038 0.962 42 H 0.111 0.889 43 H 0.018 0.982 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.076 0.924 48 H 0.105 0.895 49 H 0.042 0.958 50 H 0.086 0.914 51 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -16.564 21.825 1.197 27.425 hybrid contribution 0.958 -2.365 1.086 2.773 sum -15.606 19.460 2.283 25.049 Atomic orbital electron populations 1.20581 0.80717 1.06222 1.05683 1.24324 0.97496 0.80890 0.98581 1.70117 1.01556 1.29945 1.23350 1.21358 0.93892 0.90801 0.99127 1.20258 0.92438 0.97280 1.03227 1.20526 0.84383 0.94890 1.22344 1.16631 0.87138 0.80154 0.76308 1.90808 1.27441 1.72846 1.52730 1.48345 1.09535 1.04216 1.72853 1.22464 0.85970 0.91917 1.02846 1.22689 0.94639 0.94036 1.03808 1.22737 0.94778 0.89140 0.97140 0.92784 1.61929 1.01961 1.01333 1.59844 1.22582 0.98713 0.89613 0.96499 1.20663 0.82881 0.95057 0.95597 1.44426 1.04930 1.10922 1.73625 1.19530 1.09353 0.85835 1.24535 0.91763 1.25760 1.00705 0.99480 0.98641 1.70183 1.36873 1.19565 1.31348 0.85219 0.77588 0.79209 0.78481 1.19399 1.21396 1.21996 1.21091 0.94938 0.85514 0.96556 1.22468 0.88881 0.99163 0.97044 1.22105 0.89099 0.87168 1.01646 1.43646 1.04734 1.11331 1.55753 0.71886 0.87810 0.88239 0.87521 0.90418 0.90026 0.90594 0.89108 0.89211 0.89151 0.87531 0.96210 0.88864 0.98172 0.92324 0.94012 0.96568 0.92441 0.89486 0.95760 0.91387 0.90768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.33 10.51 71.24 0.75 0.42 16 2 C 0.25 3.69 8.12 138.20 1.12 4.81 16 3 N -0.53 -11.63 11.20 -175.56 -1.97 -13.60 16 4 C 0.08 2.00 7.15 41.97 0.30 2.30 16 5 C -0.07 -1.63 9.88 71.24 0.70 -0.93 16 6 C -0.11 -2.35 6.90 40.01 0.28 -2.07 16 7 C 0.61 15.64 7.82 86.47 0.68 16.32 16 8 O -0.56 -18.13 15.08 -4.29 -0.06 -18.19 16 9 N -0.62 -13.08 3.33 -815.97 -2.72 -15.80 16 10 C 0.09 1.15 5.13 86.70 0.44 1.59 16 11 C -0.11 -1.78 5.35 31.78 0.17 -1.61 16 12 C 0.07 1.63 2.72 46.31 0.13 1.76 16 13 H 0.05 1.27 8.14 -2.39 -0.02 1.25 16 14 N -0.53 -16.13 4.53 -861.83 -3.90 -20.03 16 15 C 0.05 1.89 5.48 86.38 0.47 2.36 16 16 C 0.18 8.60 5.42 86.35 0.47 9.07 16 17 N -0.61 -30.83 3.04 -698.11 -2.12 -32.95 16 18 C -0.26 -14.41 9.63 84.03 0.81 -13.60 16 19 H 0.06 3.47 7.88 -2.91 -0.02 3.45 16 20 C -0.05 -2.79 4.93 84.86 0.42 -2.38 16 21 N -0.93 -54.39 11.15 21.65 0.24 -54.15 16 22 Si 0.97 44.43 29.59 68.60 2.03 46.46 16 23 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 24 H -0.29 -13.02 7.11 99.48 0.71 -12.32 16 25 H -0.29 -13.51 7.11 99.48 0.71 -12.81 16 26 C 0.14 6.04 6.69 86.35 0.58 6.62 16 27 C 0.05 1.79 5.48 86.39 0.47 2.26 16 28 C 0.12 2.94 5.31 86.86 0.46 3.40 16 29 N -0.54 -7.65 5.67 -176.11 -1.00 -8.65 16 30 H 0.43 3.24 5.14 -92.71 -0.48 2.77 16 31 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 32 H 0.10 0.46 8.14 -2.39 -0.02 0.44 16 33 H 0.11 -0.08 8.14 -2.39 -0.02 -0.10 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 36 H 0.08 1.86 6.49 -2.39 -0.02 1.84 16 37 H 0.09 0.80 7.26 -2.38 -0.02 0.79 16 38 H 0.09 0.75 7.13 -2.39 -0.02 0.73 16 39 H 0.09 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.11 1.26 7.93 -2.39 -0.02 1.25 16 41 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 42 H 0.09 2.63 6.87 -2.39 -0.02 2.61 16 43 H 0.00 0.01 8.14 -2.39 -0.02 -0.01 16 44 H 0.06 3.09 6.11 -2.39 -0.01 3.08 16 45 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 48 H 0.09 2.51 6.79 -2.39 -0.02 2.50 16 49 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 50 H 0.07 1.79 7.74 -2.39 -0.02 1.77 16 51 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 Total: -1.00 -75.13 394.72 -0.79 -75.91 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: 0.46 Total: 10.65 kcal Atomic # 6 Polarization: 22.09 SS G_CDS: 8.25 Total: 30.34 kcal Atomic # 7 Polarization: -133.71 SS G_CDS: -11.47 Total: -145.18 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.06 Total: -18.19 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -75.13 -0.79 -75.91 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052081371.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.754 kcal (2) G-P(sol) polarization free energy of solvation -75.127 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.626 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.787 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.914 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.839 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds