Wall clock time and date at job start Wed Apr 1 2020 04:54:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30446 * 125.98746 * 2 1 4 4 N 1.39940 * 108.89565 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.75486 * 180.02562 * 4 3 2 6 6 C 1.34251 * 108.49152 * 359.75182 * 4 3 2 7 7 C 1.50708 * 126.29260 * 180.24027 * 6 4 3 8 8 C 1.38046 * 107.41777 * 0.39547 * 6 4 3 9 9 C 1.47428 * 126.41360 * 179.86924 * 8 6 4 10 10 O 1.21608 * 120.00248 * 269.70644 * 9 8 6 11 11 N 1.34777 * 120.00094 * 89.71166 * 9 8 6 12 12 C 1.47023 * 125.64635 * 359.69057 * 11 9 8 13 13 C 1.54325 * 107.27216 * 181.32507 * 12 11 9 14 14 C 1.55154 * 102.93889 * 22.18842 * 13 12 11 15 15 H 1.09003 * 111.03899 * 82.59286 * 14 13 12 16 16 N 1.46901 * 111.00153 * 206.42200 * 14 13 12 17 17 C 1.46899 * 111.00556 * 298.40594 * 16 14 13 18 18 C 1.53237 * 109.34278 * 172.74591 * 17 16 14 19 19 N 1.47082 * 108.52018 * 53.82941 * 18 17 16 20 20 C 1.36936 * 120.88252 * 128.84079 * 19 18 17 21 21 H 1.08008 * 119.99854 * 331.65090 * 20 19 18 22 22 C 1.38806 * 120.00405 * 151.65416 * 20 19 18 23 23 N 1.31622 * 120.00182 * 160.44996 * 22 20 19 24 24 Si 1.86803 * 119.99986 * 340.44574 * 22 20 19 25 25 H 1.48503 * 109.46997 * 89.27533 * 24 22 20 26 26 H 1.48495 * 109.47266 * 209.27740 * 24 22 20 27 27 H 1.48505 * 109.46869 * 329.27887 * 24 22 20 28 28 C 1.47075 * 118.23854 * 308.81354 * 19 18 17 29 29 C 1.46908 * 110.99979 * 174.09871 * 16 14 13 30 30 C 1.47424 * 125.65044 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.46740 * 270.00062 * 1 2 3 32 32 H 1.09000 * 109.46939 * 29.99491 * 1 2 3 33 33 H 1.08992 * 109.47340 * 149.99449 * 1 2 3 34 34 H 1.09005 * 109.46907 * 270.18261 * 7 6 4 35 35 H 1.09000 * 109.46643 * 30.18179 * 7 6 4 36 36 H 1.08995 * 109.46758 * 150.18138 * 7 6 4 37 37 H 1.09000 * 109.88400 * 300.74176 * 12 11 9 38 38 H 1.09006 * 109.88554 * 61.90405 * 12 11 9 39 39 H 1.09008 * 110.71751 * 263.83191 * 13 12 11 40 40 H 1.08995 * 110.72217 * 140.55405 * 13 12 11 41 41 H 1.09003 * 109.49114 * 292.70646 * 17 16 14 42 42 H 1.08997 * 109.49061 * 52.78362 * 17 16 14 43 43 H 1.08992 * 109.62844 * 294.12125 * 18 17 16 44 44 H 1.08998 * 109.78637 * 173.63218 * 18 17 16 45 45 H 0.96998 * 119.99663 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.63277 * 291.47677 * 28 19 18 47 47 H 1.08994 * 109.79144 * 170.99261 * 28 19 18 48 48 H 1.08999 * 109.49174 * 307.22111 * 29 16 14 49 49 H 1.09004 * 109.48767 * 67.29869 * 29 16 14 50 50 H 1.08996 * 110.37107 * 274.44590 * 30 11 9 51 51 H 1.09001 * 110.36570 * 36.77189 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 -0.0004 6 6 3.6439 -0.6979 0.0046 7 6 4.8800 -1.5600 0.0110 8 6 2.3372 -1.1432 -0.0007 9 6 1.8916 -2.5485 -0.0005 10 8 1.7074 -3.1281 -1.0536 11 7 1.6882 -3.1908 1.1668 12 6 1.8780 -2.6149 2.5061 13 6 1.5596 -3.7238 3.5311 14 6 1.7559 -5.0243 2.7081 15 1 2.8078 -5.3072 2.6683 16 7 0.9395 -6.1187 3.2502 17 6 1.3296 -6.4323 4.6313 18 6 0.3428 -7.4464 5.2196 19 7 0.2687 -8.6045 4.3160 20 6 0.4295 -9.8785 4.7917 21 1 1.0364 -10.0554 5.6675 22 6 -0.1873 -10.9426 4.1483 23 7 0.2487 -12.1697 4.3399 24 14 -1.6364 -10.6333 3.0107 25 1 -1.1404 -10.3902 1.6323 26 1 -2.5298 -11.8193 3.0134 27 1 -2.3907 -9.4441 3.4822 28 6 0.0168 -8.3581 2.8881 29 6 1.0165 -7.3082 2.3915 30 6 1.2442 -4.5891 1.3120 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 5.1825 -1.7690 -1.0152 35 1 5.6848 -1.0372 0.5277 36 1 4.6667 -2.4971 0.5250 37 1 2.9101 -2.2854 2.6251 38 1 1.1995 -1.7735 2.6474 39 1 0.5307 -3.6409 3.8817 40 1 2.2574 -3.6877 4.3676 41 1 2.3339 -6.8560 4.6383 42 1 1.3146 -5.5212 5.2293 43 1 -0.6423 -6.9887 5.3097 44 1 0.6876 -7.7697 6.2018 45 1 -0.1822 -12.9132 3.8900 46 1 -0.9996 -7.9881 2.7541 47 1 0.1470 -9.2825 2.3255 48 1 0.7744 -7.0321 1.3652 49 1 2.0252 -7.7196 2.4297 50 1 0.1566 -4.6481 1.2711 51 1 1.6883 -5.2108 0.5346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052098079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:02 Heat of formation + Delta-G solvation = 79.894261 kcal Electronic energy + Delta-G solvation = -31414.879746 eV Core-core repulsion = 27351.790192 eV Total energy + Delta-G solvation = -4063.089554 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.45 seconds Orbital eigenvalues (eV) -41.84328 -40.00839 -38.49989 -36.91083 -34.31446 -33.94087 -32.27590 -31.62298 -30.90277 -30.25273 -29.00124 -28.37911 -27.65316 -26.10481 -24.05685 -23.30158 -22.48922 -21.66338 -20.60881 -20.44284 -19.47436 -19.14362 -17.98309 -17.12831 -16.92609 -16.36359 -15.65103 -15.28616 -15.19578 -14.80382 -14.46200 -14.31382 -14.09127 -14.01076 -13.97719 -13.80264 -13.63847 -13.53632 -13.01419 -12.88700 -12.84561 -12.76089 -12.58524 -12.48588 -12.34542 -12.10478 -11.75807 -11.60326 -11.30243 -11.17832 -11.03362 -10.84706 -10.57781 -10.29958 -10.12351 -10.05981 -9.79390 -9.76602 -9.47501 -8.98158 -8.79705 -8.63964 -8.09419 -6.94232 -5.94534 -3.31795 1.29404 2.05665 2.28386 2.40563 2.90836 3.34224 3.50779 3.55114 4.04351 4.06750 4.14945 4.36955 4.49799 4.51652 4.54482 4.81855 4.86507 4.91199 4.95383 4.97189 5.14852 5.21756 5.26407 5.31794 5.33186 5.34002 5.41198 5.52854 5.55396 5.59477 5.65780 5.68992 5.75141 5.84677 5.91294 5.94949 6.02441 6.04751 6.09085 6.16762 6.23394 6.37017 6.57962 6.65192 6.74126 6.86951 7.19329 7.30864 7.36165 7.41040 7.96142 8.02375 8.33226 8.93481 9.72021 10.11737 11.21508 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.002331 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.616813 B =12011.070953 C =12247.082356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.119 3.881 3 N -0.294 5.294 4 N -0.463 5.463 5 H 0.441 0.559 6 C 0.131 3.869 7 C -0.100 4.100 8 C -0.276 4.276 9 C 0.613 3.387 10 O -0.533 6.533 11 N -0.609 5.609 12 C 0.109 3.891 13 C -0.123 4.123 14 C 0.070 3.930 15 H 0.053 0.947 16 N -0.523 5.523 17 C 0.043 3.957 18 C 0.152 3.848 19 N -0.609 5.609 20 C -0.260 4.260 21 H 0.084 0.916 22 C 0.023 3.977 23 N -0.910 5.910 24 Si 0.885 3.115 25 H -0.287 1.287 26 H -0.304 1.304 27 H -0.270 1.270 28 C 0.130 3.870 29 C 0.041 3.959 30 C 0.115 3.885 31 H 0.082 0.918 32 H 0.079 0.921 33 H 0.080 0.920 34 H 0.089 0.911 35 H 0.079 0.921 36 H 0.088 0.912 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.033 0.967 42 H 0.068 0.932 43 H 0.030 0.970 44 H 0.065 0.935 45 H 0.263 0.737 46 H 0.032 0.968 47 H 0.076 0.924 48 H 0.067 0.933 49 H 0.037 0.963 50 H 0.082 0.918 51 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.905 27.116 -5.497 28.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.049 4.049 3 N -0.117 5.117 4 N -0.169 5.169 5 H 0.286 0.714 6 C -0.001 4.001 7 C -0.158 4.158 8 C -0.291 4.291 9 C 0.400 3.600 10 O -0.409 6.409 11 N -0.343 5.343 12 C -0.014 4.014 13 C -0.162 4.162 14 C -0.040 4.040 15 H 0.071 0.929 16 N -0.248 5.248 17 C -0.086 4.086 18 C 0.026 3.974 19 N -0.333 5.333 20 C -0.388 4.388 21 H 0.102 0.898 22 C -0.176 4.176 23 N -0.553 5.553 24 Si 0.716 3.284 25 H -0.214 1.214 26 H -0.232 1.232 27 H -0.195 1.195 28 C 0.004 3.996 29 C -0.088 4.088 30 C -0.008 4.008 31 H 0.101 0.899 32 H 0.098 0.902 33 H 0.099 0.901 34 H 0.108 0.892 35 H 0.098 0.902 36 H 0.107 0.893 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.109 0.891 40 H 0.099 0.901 41 H 0.051 0.949 42 H 0.087 0.913 43 H 0.048 0.952 44 H 0.083 0.917 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.094 0.906 48 H 0.086 0.914 49 H 0.055 0.945 50 H 0.100 0.900 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 7.313 28.058 -6.136 29.638 hybrid contribution 0.562 -0.708 -0.647 1.111 sum 7.875 27.351 -6.783 29.259 Atomic orbital electron populations 1.20290 0.86005 1.04021 1.03536 1.22327 0.96994 0.88732 0.96832 1.77105 0.86110 1.22085 1.26418 1.45958 1.07640 1.04668 1.58667 0.71391 1.21359 0.96097 0.85037 0.97590 1.20588 0.92159 0.98715 1.04352 1.19773 0.92167 0.94003 1.23120 1.16894 0.76658 0.84358 0.82107 1.90812 1.51658 1.67797 1.30658 1.48387 1.66852 1.13477 1.05611 1.21968 1.00988 0.96833 0.81617 1.22716 1.03722 0.92711 0.97008 1.22742 0.95603 0.92058 0.93599 0.92884 1.61976 1.52896 1.07073 1.02863 1.22636 0.98483 0.98949 0.88500 1.21004 0.95954 0.87133 0.93345 1.44406 1.84563 1.02833 1.01489 1.18902 1.25133 0.80988 1.13791 0.89800 1.25311 0.98509 0.94946 0.98850 1.69826 1.41290 0.98757 1.45436 0.86938 0.84419 0.76729 0.80362 1.21429 1.23201 1.19521 1.21436 0.95678 0.96314 0.86140 1.22692 0.99887 0.90583 0.95679 1.22258 1.00629 0.81124 0.96773 0.89893 0.90209 0.90074 0.89199 0.90243 0.89320 0.91828 0.91319 0.89131 0.90142 0.94874 0.91346 0.95200 0.91651 0.92759 0.94976 0.90640 0.91433 0.94486 0.89975 0.90418 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.67 10.28 36.01 0.37 -0.30 16 2 C 0.12 1.25 7.26 -82.02 -0.60 0.65 16 3 N -0.29 -3.03 12.63 33.89 0.43 -2.60 16 4 N -0.46 -3.51 7.29 33.86 0.25 -3.26 16 5 H 0.44 1.77 8.96 -182.72 -1.64 0.13 16 6 C 0.13 1.10 7.29 -81.60 -0.60 0.51 16 7 C -0.10 -0.56 10.25 36.01 0.37 -0.19 16 8 C -0.28 -3.02 5.06 -105.07 -0.53 -3.55 16 9 C 0.61 7.92 7.01 -12.52 -0.09 7.83 16 10 O -0.53 -8.95 17.36 5.27 0.09 -8.86 16 11 N -0.61 -6.88 3.33 -171.77 -0.57 -7.45 16 12 C 0.11 0.95 6.47 -3.06 -0.02 0.93 16 13 C -0.12 -1.13 5.32 -24.90 -0.13 -1.26 16 14 C 0.07 0.83 2.72 -65.56 -0.18 0.65 16 15 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 16 N -0.52 -7.90 4.53 -223.76 -1.01 -8.92 16 17 C 0.04 0.67 5.48 -3.70 -0.02 0.65 16 18 C 0.15 2.89 6.69 -3.60 -0.02 2.87 16 19 N -0.61 -14.31 2.79 -172.02 -0.48 -14.79 16 20 C -0.26 -7.20 10.07 -15.06 -0.15 -7.36 16 21 H 0.08 2.48 8.06 -52.48 -0.42 2.05 16 22 C 0.02 0.66 5.25 -17.43 -0.09 0.57 16 23 N -0.91 -27.85 13.97 55.49 0.78 -27.07 16 24 Si 0.89 22.47 24.31 -169.99 -4.13 18.34 16 25 H -0.29 -6.98 6.50 56.52 0.37 -6.62 16 26 H -0.30 -7.86 7.11 56.52 0.40 -7.46 16 27 H -0.27 -6.80 6.77 56.52 0.38 -6.42 16 28 C 0.13 2.82 4.35 -3.60 -0.02 2.81 16 29 C 0.04 0.71 5.48 -3.70 -0.02 0.69 16 30 C 0.11 1.43 5.34 -2.52 -0.01 1.41 16 31 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 32 H 0.08 0.58 8.14 -51.93 -0.42 0.15 16 33 H 0.08 0.74 8.00 -51.93 -0.42 0.32 16 34 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 35 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 36 H 0.09 0.57 7.96 -51.93 -0.41 0.16 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 39 H 0.09 0.88 8.14 -51.92 -0.42 0.46 16 40 H 0.08 0.63 7.94 -51.93 -0.41 0.22 16 41 H 0.03 0.55 8.14 -51.93 -0.42 0.12 16 42 H 0.07 0.85 6.85 -51.93 -0.36 0.50 16 43 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 44 H 0.07 1.22 7.95 -51.93 -0.41 0.81 16 45 H 0.26 7.65 8.31 -40.82 -0.34 7.31 16 46 H 0.03 0.71 6.99 -51.93 -0.36 0.35 16 47 H 0.08 1.79 4.72 -51.93 -0.25 1.55 16 48 H 0.07 1.06 6.81 -51.93 -0.35 0.71 16 49 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 50 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 51 H 0.08 1.05 7.73 -51.93 -0.40 0.65 16 LS Contribution 398.88 15.07 6.01 6.01 Total: -1.00 -35.10 398.88 -10.08 -45.18 By element: Atomic # 1 Polarization: 6.20 SS G_CDS: -9.70 Total: -3.50 kcal Atomic # 6 Polarization: 8.66 SS G_CDS: -1.74 Total: 6.92 kcal Atomic # 7 Polarization: -63.48 SS G_CDS: -0.62 Total: -64.09 kcal Atomic # 8 Polarization: -8.95 SS G_CDS: 0.09 Total: -8.86 kcal Atomic # 14 Polarization: 22.47 SS G_CDS: -4.13 Total: 18.34 kcal Total LS contribution 6.01 Total: 6.01 kcal Total: -35.10 -10.08 -45.18 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052098079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.071 kcal (2) G-P(sol) polarization free energy of solvation -35.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 89.973 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.079 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.894 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.45 seconds