Wall clock time and date at job start Wed Apr 1 2020 04:54:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30446 * 125.98746 * 2 1 4 4 N 1.39940 * 108.89565 * 180.02562 * 3 2 1 5 5 H 0.97001 * 125.75486 * 180.02562 * 4 3 2 6 6 C 1.34251 * 108.49152 * 359.75182 * 4 3 2 7 7 C 1.50708 * 126.29260 * 180.24027 * 6 4 3 8 8 C 1.38046 * 107.41777 * 0.39547 * 6 4 3 9 9 C 1.47428 * 126.41360 * 179.86924 * 8 6 4 10 10 O 1.21608 * 120.00248 * 269.70644 * 9 8 6 11 11 N 1.34777 * 120.00094 * 89.71166 * 9 8 6 12 12 C 1.47023 * 125.64635 * 359.69057 * 11 9 8 13 13 C 1.54325 * 107.27216 * 181.32507 * 12 11 9 14 14 C 1.55154 * 102.93889 * 22.18842 * 13 12 11 15 15 H 1.09003 * 111.03899 * 82.59286 * 14 13 12 16 16 N 1.46901 * 111.00153 * 206.42200 * 14 13 12 17 17 C 1.46899 * 111.00556 * 298.40594 * 16 14 13 18 18 C 1.53237 * 109.34278 * 172.74591 * 17 16 14 19 19 N 1.47082 * 108.52018 * 53.82941 * 18 17 16 20 20 C 1.36936 * 120.88252 * 128.84079 * 19 18 17 21 21 H 1.08008 * 119.99854 * 331.65090 * 20 19 18 22 22 C 1.38806 * 120.00405 * 151.65416 * 20 19 18 23 23 N 1.31622 * 120.00182 * 160.44996 * 22 20 19 24 24 Si 1.86803 * 119.99986 * 340.44574 * 22 20 19 25 25 H 1.48503 * 109.46997 * 89.27533 * 24 22 20 26 26 H 1.48495 * 109.47266 * 209.27740 * 24 22 20 27 27 H 1.48505 * 109.46869 * 329.27887 * 24 22 20 28 28 C 1.47075 * 118.23854 * 308.81354 * 19 18 17 29 29 C 1.46908 * 110.99979 * 174.09871 * 16 14 13 30 30 C 1.47424 * 125.65044 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.46740 * 270.00062 * 1 2 3 32 32 H 1.09000 * 109.46939 * 29.99491 * 1 2 3 33 33 H 1.08992 * 109.47340 * 149.99449 * 1 2 3 34 34 H 1.09005 * 109.46907 * 270.18261 * 7 6 4 35 35 H 1.09000 * 109.46643 * 30.18179 * 7 6 4 36 36 H 1.08995 * 109.46758 * 150.18138 * 7 6 4 37 37 H 1.09000 * 109.88400 * 300.74176 * 12 11 9 38 38 H 1.09006 * 109.88554 * 61.90405 * 12 11 9 39 39 H 1.09008 * 110.71751 * 263.83191 * 13 12 11 40 40 H 1.08995 * 110.72217 * 140.55405 * 13 12 11 41 41 H 1.09003 * 109.49114 * 292.70646 * 17 16 14 42 42 H 1.08997 * 109.49061 * 52.78362 * 17 16 14 43 43 H 1.08992 * 109.62844 * 294.12125 * 18 17 16 44 44 H 1.08998 * 109.78637 * 173.63218 * 18 17 16 45 45 H 0.96998 * 119.99663 * 180.02562 * 23 22 20 46 46 H 1.08999 * 109.63277 * 291.47677 * 28 19 18 47 47 H 1.08994 * 109.79144 * 170.99261 * 28 19 18 48 48 H 1.08999 * 109.49174 * 307.22111 * 29 16 14 49 49 H 1.09004 * 109.48767 * 67.29869 * 29 16 14 50 50 H 1.08996 * 110.37107 * 274.44590 * 30 11 9 51 51 H 1.09001 * 110.36570 * 36.77189 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2735 1.0555 0.0000 4 7 3.6111 0.6442 -0.0006 5 1 4.3842 1.2300 -0.0004 6 6 3.6439 -0.6979 0.0046 7 6 4.8800 -1.5600 0.0110 8 6 2.3372 -1.1432 -0.0007 9 6 1.8916 -2.5485 -0.0005 10 8 1.7074 -3.1281 -1.0536 11 7 1.6882 -3.1908 1.1668 12 6 1.8780 -2.6149 2.5061 13 6 1.5596 -3.7238 3.5311 14 6 1.7559 -5.0243 2.7081 15 1 2.8078 -5.3072 2.6683 16 7 0.9395 -6.1187 3.2502 17 6 1.3296 -6.4323 4.6313 18 6 0.3428 -7.4464 5.2196 19 7 0.2687 -8.6045 4.3160 20 6 0.4295 -9.8785 4.7917 21 1 1.0364 -10.0554 5.6675 22 6 -0.1873 -10.9426 4.1483 23 7 0.2487 -12.1697 4.3399 24 14 -1.6364 -10.6333 3.0107 25 1 -1.1404 -10.3902 1.6323 26 1 -2.5298 -11.8193 3.0134 27 1 -2.3907 -9.4441 3.4822 28 6 0.0168 -8.3581 2.8881 29 6 1.0165 -7.3082 2.3915 30 6 1.2442 -4.5891 1.3120 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8899 -0.5139 34 1 5.1825 -1.7690 -1.0152 35 1 5.6848 -1.0372 0.5277 36 1 4.6667 -2.4971 0.5250 37 1 2.9101 -2.2854 2.6251 38 1 1.1995 -1.7735 2.6474 39 1 0.5307 -3.6409 3.8817 40 1 2.2574 -3.6877 4.3676 41 1 2.3339 -6.8560 4.6383 42 1 1.3146 -5.5212 5.2293 43 1 -0.6423 -6.9887 5.3097 44 1 0.6876 -7.7697 6.2018 45 1 -0.1822 -12.9132 3.8900 46 1 -0.9996 -7.9881 2.7541 47 1 0.1470 -9.2825 2.3255 48 1 0.7744 -7.0321 1.3652 49 1 2.0252 -7.7196 2.4297 50 1 0.1566 -4.6481 1.2711 51 1 1.6883 -5.2108 0.5346 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052098079.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:54:00 Heat of formation + Delta-G solvation = 53.650772 kcal Electronic energy + Delta-G solvation = -31416.017749 eV Core-core repulsion = 27351.790192 eV Total energy + Delta-G solvation = -4064.227557 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -42.54573 -40.98402 -39.75525 -38.14298 -35.85568 -34.57403 -33.70628 -32.83933 -32.19980 -31.47155 -29.94488 -29.18343 -28.37370 -27.57354 -25.17868 -24.84387 -23.92268 -22.50566 -21.69789 -21.17704 -20.92961 -19.95826 -18.89051 -18.70199 -17.80144 -17.62955 -17.09500 -16.31447 -16.10367 -15.96014 -15.77339 -15.73253 -15.42495 -15.33389 -14.95875 -14.73157 -14.40516 -14.30164 -14.24879 -14.05629 -13.87651 -13.79523 -13.54251 -13.41401 -13.36937 -13.32448 -12.98822 -12.76135 -12.64649 -12.40649 -12.17015 -12.10014 -11.91134 -11.80240 -11.68025 -11.50603 -11.40337 -11.10149 -10.70382 -10.41820 -9.72402 -9.69971 -9.39207 -8.86580 -8.16713 -5.49310 0.64278 1.30474 1.30930 1.42012 1.46074 1.51428 1.69206 2.05020 2.41958 2.87931 3.08722 3.31882 3.38518 3.48174 3.61702 3.68999 3.97458 4.05412 4.09001 4.14075 4.24297 4.29582 4.31470 4.36483 4.46062 4.49874 4.55962 4.59913 4.63966 4.66944 4.69688 4.75241 4.80683 4.84337 4.86627 4.92100 4.94780 4.97788 4.99547 5.04422 5.07401 5.20225 5.28216 5.33722 5.42085 5.85126 6.06251 6.10337 6.21661 6.23764 6.45222 6.53482 6.91453 7.07872 7.61942 8.05253 9.03213 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022118 B = 0.002331 C = 0.002286 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1265.616813 B =12011.070953 C =12247.082356 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.110 3.890 3 N -0.315 5.315 4 N -0.449 5.449 5 H 0.457 0.543 6 C 0.146 3.854 7 C -0.099 4.099 8 C -0.306 4.306 9 C 0.616 3.384 10 O -0.583 6.583 11 N -0.604 5.604 12 C 0.111 3.889 13 C -0.113 4.113 14 C 0.074 3.926 15 H 0.056 0.944 16 N -0.524 5.524 17 C 0.056 3.944 18 C 0.145 3.855 19 N -0.624 5.624 20 C -0.246 4.246 21 H 0.054 0.946 22 C -0.035 4.035 23 N -0.958 5.958 24 Si 0.946 3.054 25 H -0.273 1.273 26 H -0.312 1.312 27 H -0.265 1.265 28 C 0.126 3.874 29 C 0.053 3.947 30 C 0.116 3.884 31 H 0.098 0.902 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.093 0.907 35 H 0.112 0.888 36 H 0.081 0.919 37 H 0.082 0.918 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.104 0.896 41 H 0.023 0.977 42 H 0.109 0.891 43 H 0.037 0.963 44 H 0.063 0.937 45 H 0.261 0.739 46 H 0.033 0.967 47 H 0.051 0.949 48 H 0.085 0.915 49 H 0.025 0.975 50 H 0.073 0.927 51 H 0.061 0.939 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.720 30.686 -5.206 32.323 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.057 4.057 3 N -0.138 5.138 4 N -0.157 5.157 5 H 0.305 0.695 6 C 0.012 3.988 7 C -0.157 4.157 8 C -0.321 4.321 9 C 0.405 3.595 10 O -0.463 6.463 11 N -0.337 5.337 12 C -0.012 4.012 13 C -0.151 4.151 14 C -0.035 4.035 15 H 0.074 0.926 16 N -0.250 5.250 17 C -0.073 4.073 18 C 0.020 3.980 19 N -0.349 5.349 20 C -0.375 4.375 21 H 0.072 0.928 22 C -0.230 4.230 23 N -0.604 5.604 24 Si 0.775 3.225 25 H -0.200 1.200 26 H -0.240 1.240 27 H -0.189 1.189 28 C 0.001 3.999 29 C -0.077 4.077 30 C -0.007 4.007 31 H 0.116 0.884 32 H 0.107 0.893 33 H 0.086 0.914 34 H 0.112 0.888 35 H 0.130 0.870 36 H 0.100 0.900 37 H 0.100 0.900 38 H 0.098 0.902 39 H 0.110 0.890 40 H 0.122 0.878 41 H 0.041 0.959 42 H 0.127 0.873 43 H 0.055 0.945 44 H 0.081 0.919 45 H 0.070 0.930 46 H 0.051 0.949 47 H 0.069 0.931 48 H 0.103 0.897 49 H 0.044 0.956 50 H 0.091 0.909 51 H 0.080 0.920 Dipole moment (debyes) X Y Z Total from point charges 8.146 31.723 -5.817 33.265 hybrid contribution 0.402 -1.737 -0.678 1.907 sum 8.548 29.986 -6.495 31.850 Atomic orbital electron populations 1.20327 0.85208 1.03790 1.04442 1.22586 0.97802 0.88621 0.96726 1.77056 0.87172 1.22317 1.27241 1.45968 1.07504 1.04727 1.57478 0.69474 1.21695 0.96187 0.85420 0.95462 1.20709 0.91823 0.98229 1.04976 1.19726 0.93517 0.92908 1.25958 1.17161 0.75759 0.84935 0.81650 1.90779 1.53980 1.69066 1.32466 1.48408 1.65869 1.12948 1.06457 1.22130 1.02467 0.96841 0.79721 1.22722 1.04524 0.90556 0.97283 1.22723 0.94981 0.92045 0.93767 0.92614 1.61915 1.54008 1.06563 1.02475 1.22494 0.96427 0.99433 0.88965 1.21224 0.97441 0.86451 0.92887 1.44565 1.84786 1.02521 1.03039 1.18864 1.23343 0.83063 1.12261 0.92820 1.25912 1.00994 0.94732 1.01322 1.69952 1.42899 0.99711 1.47841 0.85940 0.81009 0.76150 0.79366 1.19955 1.24046 1.18927 1.21420 0.96909 0.96623 0.84966 1.22429 0.97772 0.90593 0.96882 1.22129 0.99979 0.81856 0.96728 0.88383 0.89327 0.91356 0.88827 0.86955 0.90039 0.90009 0.90167 0.89036 0.87769 0.95855 0.87259 0.94456 0.91882 0.92990 0.94869 0.93083 0.89709 0.95639 0.90868 0.92030 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.23 10.28 71.24 0.73 -0.50 16 2 C 0.11 2.15 7.26 43.51 0.32 2.46 16 3 N -0.31 -5.87 12.63 -46.68 -0.59 -6.45 16 4 N -0.45 -5.61 7.29 -46.79 -0.34 -5.95 16 5 H 0.46 2.28 8.96 -213.42 -1.91 0.36 16 6 C 0.15 2.10 7.29 42.15 0.31 2.41 16 7 C -0.10 -0.82 10.25 71.24 0.73 -0.09 16 8 C -0.31 -6.23 5.06 -20.15 -0.10 -6.33 16 9 C 0.62 15.41 7.01 86.66 0.61 16.01 16 10 O -0.58 -19.82 17.36 -4.06 -0.07 -19.89 16 11 N -0.60 -12.53 3.33 -815.62 -2.71 -15.24 16 12 C 0.11 1.52 6.47 86.73 0.56 2.08 16 13 C -0.11 -1.59 5.32 31.78 0.17 -1.42 16 14 C 0.07 1.55 2.72 46.31 0.13 1.68 16 15 H 0.06 1.20 8.14 -2.39 -0.02 1.18 16 16 N -0.52 -14.51 4.53 -861.86 -3.90 -18.42 16 17 C 0.06 1.55 5.48 86.38 0.47 2.02 16 18 C 0.14 5.29 6.69 86.35 0.58 5.87 16 19 N -0.62 -29.14 2.79 -698.16 -1.95 -31.09 16 20 C -0.25 -13.91 10.07 84.03 0.85 -13.06 16 21 H 0.05 3.30 8.06 -2.91 -0.02 3.28 16 22 C -0.03 -2.05 5.25 84.86 0.45 -1.61 16 23 N -0.96 -60.54 13.97 21.65 0.30 -60.23 16 24 Si 0.95 47.34 24.31 68.60 1.67 49.00 16 25 H -0.27 -12.90 6.50 99.48 0.65 -12.25 16 26 H -0.31 -15.85 7.11 99.48 0.71 -15.14 16 27 H -0.26 -12.82 6.77 99.48 0.67 -12.15 16 28 C 0.13 5.38 4.35 86.35 0.38 5.75 16 29 C 0.05 1.78 5.48 86.38 0.47 2.25 16 30 C 0.12 2.72 5.34 86.86 0.46 3.18 16 31 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.09 1.18 8.14 -2.39 -0.02 1.16 16 33 H 0.07 1.23 8.00 -2.39 -0.02 1.21 16 34 H 0.09 0.77 8.14 -2.38 -0.02 0.75 16 35 H 0.11 0.19 8.14 -2.39 -0.02 0.17 16 36 H 0.08 0.84 7.96 -2.39 -0.02 0.82 16 37 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 38 H 0.08 0.99 8.14 -2.38 -0.02 0.97 16 39 H 0.09 1.35 8.14 -2.38 -0.02 1.33 16 40 H 0.10 1.05 7.94 -2.39 -0.02 1.03 16 41 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 42 H 0.11 2.20 6.85 -2.39 -0.02 2.19 16 43 H 0.04 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.06 2.30 7.95 -2.39 -0.02 2.28 16 45 H 0.26 15.73 8.31 -92.71 -0.77 14.96 16 46 H 0.03 1.42 6.99 -2.39 -0.02 1.40 16 47 H 0.05 2.41 4.72 -2.39 -0.01 2.40 16 48 H 0.08 2.56 6.81 -2.39 -0.02 2.55 16 49 H 0.03 0.92 8.14 -2.38 -0.02 0.90 16 50 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 51 H 0.06 1.64 7.73 -2.39 -0.02 1.62 16 Total: -1.00 -79.13 398.88 -1.56 -80.70 By element: Atomic # 1 Polarization: 7.94 SS G_CDS: -1.07 Total: 6.88 kcal Atomic # 6 Polarization: 13.61 SS G_CDS: 7.10 Total: 20.71 kcal Atomic # 7 Polarization: -128.20 SS G_CDS: -9.19 Total: -137.39 kcal Atomic # 8 Polarization: -19.82 SS G_CDS: -0.07 Total: -19.89 kcal Atomic # 14 Polarization: 47.34 SS G_CDS: 1.67 Total: 49.00 kcal Total: -79.13 -1.56 -80.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052098079.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.346 kcal (2) G-P(sol) polarization free energy of solvation -79.132 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.214 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.563 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.696 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.651 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds