Wall clock time and date at job start Wed Apr 1 2020 06:16:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47180 * 2 1 4 4 N 1.33316 * 126.10964 * 270.15453 * 3 2 1 5 5 C 1.30857 * 109.68343 * 180.30980 * 4 3 2 6 6 N 1.34488 * 109.16278 * 359.72765 * 5 4 3 7 7 H 0.97001 * 126.47093 * 179.97438 * 6 5 4 8 8 C 1.36662 * 126.10437 * 90.00456 * 3 2 1 9 9 C 1.46765 * 126.84405 * 359.96773 * 8 3 2 10 10 O 1.21685 * 120.00154 * 359.71315 * 9 8 3 11 11 N 1.34771 * 119.99898 * 179.43616 * 9 8 3 12 12 C 1.47023 * 125.64899 * 359.69046 * 11 9 8 13 13 C 1.54318 * 107.27821 * 180.96864 * 12 11 9 14 14 C 1.55163 * 102.86191 * 22.52719 * 13 12 11 15 15 H 1.08995 * 111.03609 * 82.39033 * 14 13 12 16 16 N 1.46901 * 111.00470 * 206.22973 * 14 13 12 17 17 C 1.46900 * 110.99835 * 297.94936 * 16 14 13 18 18 C 1.53234 * 109.33710 * 172.74375 * 17 16 14 19 19 N 1.47081 * 108.52186 * 53.83083 * 18 17 16 20 20 C 1.36940 * 120.87725 * 128.83185 * 19 18 17 21 21 H 1.08007 * 119.99854 * 206.62584 * 20 19 18 22 22 C 1.38812 * 120.00118 * 26.63172 * 20 19 18 23 23 N 1.31612 * 120.00184 * 17.03757 * 22 20 19 24 24 Si 1.86801 * 119.99782 * 197.03687 * 22 20 19 25 25 H 1.48502 * 109.47165 * 59.99727 * 24 22 20 26 26 H 1.48504 * 109.47189 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47093 * 299.99843 * 24 22 20 28 28 C 1.47076 * 118.23681 * 308.81651 * 19 18 17 29 29 C 1.46891 * 111.00062 * 173.64731 * 16 14 13 30 30 C 1.47425 * 125.65124 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47693 * 59.99416 * 1 2 3 32 32 H 1.09003 * 109.47625 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46877 * 299.99478 * 1 2 3 34 34 H 1.09003 * 109.46877 * 240.00522 * 2 1 3 35 35 H 1.08998 * 109.47693 * 120.00584 * 2 1 3 36 36 H 1.08000 * 125.41309 * 179.72991 * 5 4 3 37 37 H 1.09000 * 109.88228 * 300.51052 * 12 11 9 38 38 H 1.08998 * 109.88438 * 61.67763 * 12 11 9 39 39 H 1.08992 * 110.92302 * 264.11320 * 13 12 11 40 40 H 1.08998 * 110.59034 * 140.78212 * 13 12 11 41 41 H 1.08995 * 109.49206 * 292.70647 * 17 16 14 42 42 H 1.09002 * 109.48833 * 52.78877 * 17 16 14 43 43 H 1.09006 * 109.63282 * 294.11970 * 18 17 16 44 44 H 1.09003 * 109.79122 * 173.63368 * 18 17 16 45 45 H 0.97003 * 119.99961 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.62787 * 291.46642 * 28 19 18 47 47 H 1.09003 * 109.78475 * 170.98897 * 28 19 18 48 48 H 1.09006 * 109.49814 * 307.21431 * 29 16 14 49 49 H 1.09006 * 109.49131 * 67.29452 * 29 16 14 50 50 H 1.09002 * 110.36715 * 274.67428 * 30 11 9 51 51 H 1.09007 * 110.36444 * 36.88154 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2915 2.1625 -1.0770 5 6 2.7171 3.3434 -0.7070 6 7 2.7405 3.4032 0.6363 7 1 3.0148 4.1618 1.1750 8 6 2.3008 2.1800 1.1042 9 6 2.1568 1.7745 2.5073 10 8 1.7560 0.6584 2.7800 11 7 2.4739 2.6363 3.4937 12 6 2.9792 4.0043 3.3069 13 6 3.2235 4.5983 4.7101 14 6 3.3872 3.3351 5.5961 15 1 4.4029 2.9442 5.5362 16 7 3.0161 3.6174 6.9892 17 6 3.8922 4.6437 7.5698 18 6 3.3635 5.0389 8.9527 19 7 3.2131 3.8196 9.7614 20 6 3.7576 3.7362 11.0151 21 1 4.0281 2.7735 11.4233 22 6 3.9617 4.8887 11.7613 23 7 3.3449 6.0037 11.4320 24 14 5.1119 4.8571 13.2328 25 1 6.4752 4.4719 12.7874 26 1 5.1563 6.2046 13.8555 27 1 4.6181 3.8695 14.2259 28 6 2.4620 2.6926 9.1879 29 6 3.0261 2.3898 7.7957 30 6 2.3782 2.3611 4.9389 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.0038 4.1426 -1.3744 37 1 3.9126 3.9811 2.7445 38 1 2.2392 4.6036 2.7765 39 1 2.3684 5.1901 5.0365 40 1 4.1344 5.1968 4.7197 41 1 4.9027 4.2468 7.6664 42 1 3.9054 5.5198 6.9214 43 1 2.3963 5.5307 8.8482 44 1 4.0676 5.7152 9.4375 45 1 3.4878 6.8092 11.9532 46 1 1.4081 2.9587 9.1061 47 1 2.5695 1.8150 9.8255 48 1 2.4112 1.6311 7.3113 49 1 4.0488 2.0244 7.8893 50 1 1.3686 2.5622 5.2973 51 1 2.6550 1.3276 5.1474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052112574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:44 Heat of formation + Delta-G solvation = 66.445789 kcal Electronic energy + Delta-G solvation = -31122.718694 eV Core-core repulsion = 27059.045971 eV Total energy + Delta-G solvation = -4063.672723 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -42.63725 -40.14669 -38.49612 -37.00690 -34.69250 -34.08512 -32.48768 -31.72240 -30.57245 -30.27844 -29.37319 -28.52715 -26.16273 -24.77130 -23.64295 -22.99587 -22.83951 -22.03541 -21.36861 -20.46071 -19.62094 -19.22526 -18.05430 -17.22376 -16.81108 -16.43763 -15.93335 -15.52793 -15.07948 -14.93355 -14.61288 -14.33434 -14.17598 -14.08099 -14.04599 -13.66355 -13.56172 -13.46577 -13.25799 -12.97913 -12.71932 -12.55436 -12.49760 -12.01273 -11.63805 -11.41153 -11.33637 -11.18340 -11.13376 -11.05367 -10.77149 -10.68299 -10.52483 -10.36842 -10.36272 -10.11987 -10.08232 -9.78988 -9.67236 -9.11420 -8.74443 -8.55508 -8.00175 -6.72239 -5.83010 -3.24033 0.97050 2.41015 2.50609 2.70110 3.02587 3.35159 3.40976 3.42085 4.00715 4.06200 4.15341 4.31219 4.45020 4.46318 4.58314 4.71674 4.76701 4.95861 5.08837 5.16973 5.26431 5.31674 5.34478 5.36346 5.38365 5.47567 5.56350 5.64256 5.73348 5.76922 5.80128 5.84558 5.90788 6.03584 6.05021 6.06636 6.10577 6.14457 6.25164 6.27851 6.45178 6.61256 6.80845 6.86996 7.10111 7.16301 7.45213 7.54069 7.56401 7.61538 7.75923 7.82507 8.38618 9.16545 9.79690 10.37816 11.25917 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.002050 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.431588 B =13656.834991 C =14317.563650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.049 4.049 3 C 0.102 3.898 4 N -0.497 5.497 5 C 0.215 3.785 6 N -0.559 5.559 7 H 0.423 0.577 8 C -0.086 4.086 9 C 0.609 3.391 10 O -0.518 6.518 11 N -0.617 5.617 12 C 0.091 3.909 13 C -0.121 4.121 14 C 0.069 3.931 15 H 0.052 0.948 16 N -0.520 5.520 17 C 0.036 3.964 18 C 0.178 3.822 19 N -0.595 5.595 20 C -0.252 4.252 21 H 0.066 0.934 22 C 0.001 3.999 23 N -0.904 5.904 24 Si 0.903 3.097 25 H -0.285 1.285 26 H -0.290 1.290 27 H -0.282 1.282 28 C 0.149 3.851 29 C 0.041 3.959 30 C 0.118 3.882 31 H 0.052 0.948 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.076 0.924 35 H 0.094 0.906 36 H 0.215 0.785 37 H 0.065 0.935 38 H 0.068 0.932 39 H 0.095 0.905 40 H 0.084 0.916 41 H 0.026 0.974 42 H 0.062 0.938 43 H 0.026 0.974 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.064 0.936 49 H 0.029 0.971 50 H 0.084 0.916 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.499 -2.660 -23.739 23.893 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.088 4.088 3 C -0.033 4.033 4 N -0.217 5.217 5 C -0.069 4.069 6 N -0.168 5.168 7 H 0.266 0.734 8 C -0.202 4.202 9 C 0.398 3.602 10 O -0.394 6.394 11 N -0.352 5.352 12 C -0.033 4.033 13 C -0.159 4.159 14 C -0.041 4.041 15 H 0.070 0.930 16 N -0.245 5.245 17 C -0.093 4.093 18 C 0.052 3.948 19 N -0.319 5.319 20 C -0.382 4.382 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.211 1.211 26 H -0.216 1.216 27 H -0.209 1.209 28 C 0.022 3.978 29 C -0.088 4.088 30 C -0.004 4.004 31 H 0.071 0.929 32 H 0.079 0.921 33 H 0.074 0.926 34 H 0.094 0.906 35 H 0.112 0.888 36 H 0.232 0.768 37 H 0.083 0.917 38 H 0.086 0.914 39 H 0.113 0.887 40 H 0.102 0.898 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.082 0.918 49 H 0.048 0.952 50 H 0.102 0.898 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges -1.311 -3.240 -24.301 24.551 hybrid contribution 1.807 0.790 1.703 2.606 sum 0.496 -2.450 -22.598 22.736 Atomic orbital electron populations 1.21614 0.94285 1.01868 1.01788 1.20070 0.96318 0.88653 1.03721 1.21070 0.98709 0.97015 0.86509 1.70136 1.18384 1.02710 1.30472 1.25172 1.01434 0.98045 0.82245 1.43924 1.50131 1.13808 1.08959 0.73363 1.20857 1.16100 0.88413 0.94806 1.16442 0.77809 0.83971 0.81968 1.90841 1.46673 1.19353 1.82551 1.48321 1.65562 1.14136 1.07144 1.22234 0.98061 0.83235 0.99758 1.22686 1.03911 0.97774 0.91520 1.22742 0.96458 0.94417 0.90487 0.93043 1.62032 1.52894 1.10460 0.99152 1.22922 0.93811 0.93296 0.99238 1.20866 0.99374 0.89087 0.85479 1.44115 1.60722 1.12362 1.14655 1.19154 1.33992 0.93358 0.91690 0.91669 1.25020 0.99879 0.96933 0.97879 1.70011 1.42450 1.01021 1.41360 0.86363 0.81124 0.76732 0.82506 1.21124 1.21610 1.20857 1.20965 0.94360 0.91919 0.90521 1.22686 0.99349 0.90492 0.96284 1.22278 1.00710 0.99758 0.77640 0.92896 0.92096 0.92578 0.90588 0.88798 0.76821 0.91678 0.91356 0.88661 0.89770 0.95592 0.91945 0.95540 0.89255 0.93556 0.95588 0.92507 0.91760 0.95221 0.89775 0.90184 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.37 9.89 37.15 0.37 -1.00 16 2 C -0.05 -0.53 5.93 -27.88 -0.17 -0.70 16 3 C 0.10 1.18 6.40 -82.52 -0.53 0.66 16 4 N -0.50 -5.38 11.20 -10.65 -0.12 -5.50 16 5 C 0.22 1.54 13.01 -90.58 -1.18 0.37 16 6 N -0.56 -4.12 5.67 -10.79 -0.06 -4.18 16 7 H 0.42 1.98 5.14 -40.82 -0.21 1.77 16 8 C -0.09 -0.95 6.89 -82.15 -0.57 -1.52 16 9 C 0.61 7.78 7.82 -12.82 -0.10 7.68 16 10 O -0.52 -8.01 15.07 5.20 0.08 -7.93 16 11 N -0.62 -6.88 3.33 -172.04 -0.57 -7.45 16 12 C 0.09 0.71 5.12 -3.07 -0.02 0.69 16 13 C -0.12 -1.13 5.35 -24.90 -0.13 -1.27 16 14 C 0.07 0.86 2.71 -65.57 -0.18 0.68 16 15 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 16 N -0.52 -8.27 4.53 -223.80 -1.01 -9.28 16 17 C 0.04 0.64 5.48 -3.70 -0.02 0.62 16 18 C 0.18 4.08 5.42 -3.60 -0.02 4.06 16 19 N -0.60 -14.61 3.04 -172.01 -0.52 -15.14 16 20 C -0.25 -6.81 9.63 -15.06 -0.15 -6.95 16 21 H 0.07 1.73 7.89 -52.48 -0.41 1.32 16 22 C 0.00 0.04 4.93 -17.43 -0.09 -0.05 16 23 N -0.90 -25.65 11.15 55.49 0.62 -25.03 16 24 Si 0.90 21.32 29.59 -169.99 -5.03 16.29 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 28 C 0.15 3.07 6.69 -3.61 -0.02 3.04 16 29 C 0.04 0.70 5.48 -3.71 -0.02 0.68 16 30 C 0.12 1.46 5.32 -2.54 -0.01 1.45 16 31 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 34 H 0.08 0.74 8.14 -51.93 -0.42 0.31 16 35 H 0.09 1.11 6.49 -51.93 -0.34 0.78 16 36 H 0.22 0.53 8.06 -52.49 -0.42 0.11 16 37 H 0.07 0.40 7.15 -51.93 -0.37 0.02 16 38 H 0.07 0.42 7.23 -51.93 -0.38 0.04 16 39 H 0.09 0.97 8.14 -51.93 -0.42 0.55 16 40 H 0.08 0.69 7.94 -51.93 -0.41 0.27 16 41 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 42 H 0.06 0.95 6.87 -51.93 -0.36 0.60 16 43 H 0.03 0.65 8.14 -51.93 -0.42 0.23 16 44 H 0.09 2.28 6.11 -51.93 -0.32 1.97 16 45 H 0.25 7.00 8.31 -40.82 -0.34 6.66 16 46 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 47 H 0.06 1.13 7.96 -51.93 -0.41 0.72 16 48 H 0.06 0.95 6.79 -51.93 -0.35 0.60 16 49 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 50 H 0.08 1.12 8.14 -51.93 -0.42 0.69 16 51 H 0.08 1.06 7.74 -51.92 -0.40 0.66 16 LS Contribution 394.19 15.07 5.94 5.94 Total: -1.00 -32.92 394.19 -11.67 -44.59 By element: Atomic # 1 Polarization: 7.43 SS G_CDS: -8.17 Total: -0.74 kcal Atomic # 6 Polarization: 11.26 SS G_CDS: -2.83 Total: 8.43 kcal Atomic # 7 Polarization: -64.92 SS G_CDS: -1.67 Total: -66.59 kcal Atomic # 8 Polarization: -8.01 SS G_CDS: 0.08 Total: -7.93 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.03 Total: 16.29 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.92 -11.67 -44.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052112574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.039 kcal (2) G-P(sol) polarization free energy of solvation -32.919 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.675 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.594 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds