Wall clock time and date at job start Wed Apr 1 2020 06:16:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 C 1.50703 * 109.47180 * 2 1 4 4 N 1.33316 * 126.10964 * 270.15453 * 3 2 1 5 5 C 1.30857 * 109.68343 * 180.30980 * 4 3 2 6 6 N 1.34488 * 109.16278 * 359.72765 * 5 4 3 7 7 H 0.97001 * 126.47093 * 179.97438 * 6 5 4 8 8 C 1.36662 * 126.10437 * 90.00456 * 3 2 1 9 9 C 1.46765 * 126.84405 * 359.96773 * 8 3 2 10 10 O 1.21685 * 120.00154 * 359.71315 * 9 8 3 11 11 N 1.34771 * 119.99898 * 179.43616 * 9 8 3 12 12 C 1.47023 * 125.64899 * 359.69046 * 11 9 8 13 13 C 1.54318 * 107.27821 * 180.96864 * 12 11 9 14 14 C 1.55163 * 102.86191 * 22.52719 * 13 12 11 15 15 H 1.08995 * 111.03609 * 82.39033 * 14 13 12 16 16 N 1.46901 * 111.00470 * 206.22973 * 14 13 12 17 17 C 1.46900 * 110.99835 * 297.94936 * 16 14 13 18 18 C 1.53234 * 109.33710 * 172.74375 * 17 16 14 19 19 N 1.47081 * 108.52186 * 53.83083 * 18 17 16 20 20 C 1.36940 * 120.87725 * 128.83185 * 19 18 17 21 21 H 1.08007 * 119.99854 * 206.62584 * 20 19 18 22 22 C 1.38812 * 120.00118 * 26.63172 * 20 19 18 23 23 N 1.31612 * 120.00184 * 17.03757 * 22 20 19 24 24 Si 1.86801 * 119.99782 * 197.03687 * 22 20 19 25 25 H 1.48502 * 109.47165 * 59.99727 * 24 22 20 26 26 H 1.48504 * 109.47189 * 180.02562 * 24 22 20 27 27 H 1.48506 * 109.47093 * 299.99843 * 24 22 20 28 28 C 1.47076 * 118.23681 * 308.81651 * 19 18 17 29 29 C 1.46891 * 111.00062 * 173.64731 * 16 14 13 30 30 C 1.47425 * 125.65124 * 180.02562 * 11 9 8 31 31 H 1.08998 * 109.47693 * 59.99416 * 1 2 3 32 32 H 1.09003 * 109.47625 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.46877 * 299.99478 * 1 2 3 34 34 H 1.09003 * 109.46877 * 240.00522 * 2 1 3 35 35 H 1.08998 * 109.47693 * 120.00584 * 2 1 3 36 36 H 1.08000 * 125.41309 * 179.72991 * 5 4 3 37 37 H 1.09000 * 109.88228 * 300.51052 * 12 11 9 38 38 H 1.08998 * 109.88438 * 61.67763 * 12 11 9 39 39 H 1.08992 * 110.92302 * 264.11320 * 13 12 11 40 40 H 1.08998 * 110.59034 * 140.78212 * 13 12 11 41 41 H 1.08995 * 109.49206 * 292.70647 * 17 16 14 42 42 H 1.09002 * 109.48833 * 52.78877 * 17 16 14 43 43 H 1.09006 * 109.63282 * 294.11970 * 18 17 16 44 44 H 1.09003 * 109.79122 * 173.63368 * 18 17 16 45 45 H 0.97003 * 119.99961 * 180.02562 * 23 22 20 46 46 H 1.09001 * 109.62787 * 291.46642 * 28 19 18 47 47 H 1.09003 * 109.78475 * 170.98897 * 28 19 18 48 48 H 1.09006 * 109.49814 * 307.21431 * 29 16 14 49 49 H 1.09006 * 109.49131 * 67.29452 * 29 16 14 50 50 H 1.09002 * 110.36715 * 274.67428 * 30 11 9 51 51 H 1.09007 * 110.36444 * 36.88154 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2915 2.1625 -1.0770 5 6 2.7171 3.3434 -0.7070 6 7 2.7405 3.4032 0.6363 7 1 3.0148 4.1618 1.1750 8 6 2.3008 2.1800 1.1042 9 6 2.1568 1.7745 2.5073 10 8 1.7560 0.6584 2.7800 11 7 2.4739 2.6363 3.4937 12 6 2.9792 4.0043 3.3069 13 6 3.2235 4.5983 4.7101 14 6 3.3872 3.3351 5.5961 15 1 4.4029 2.9442 5.5362 16 7 3.0161 3.6174 6.9892 17 6 3.8922 4.6437 7.5698 18 6 3.3635 5.0389 8.9527 19 7 3.2131 3.8196 9.7614 20 6 3.7576 3.7362 11.0151 21 1 4.0281 2.7735 11.4233 22 6 3.9617 4.8887 11.7613 23 7 3.3449 6.0037 11.4320 24 14 5.1119 4.8571 13.2328 25 1 6.4752 4.4719 12.7874 26 1 5.1563 6.2046 13.8555 27 1 4.6181 3.8695 14.2259 28 6 2.4620 2.6926 9.1879 29 6 3.0261 2.3898 7.7957 30 6 2.3782 2.3611 4.9389 31 1 -0.3634 0.5139 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 -0.3633 0.5138 0.8901 34 1 1.8932 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 3.0038 4.1426 -1.3744 37 1 3.9126 3.9811 2.7445 38 1 2.2392 4.6036 2.7765 39 1 2.3684 5.1901 5.0365 40 1 4.1344 5.1968 4.7197 41 1 4.9027 4.2468 7.6664 42 1 3.9054 5.5198 6.9214 43 1 2.3963 5.5307 8.8482 44 1 4.0676 5.7152 9.4375 45 1 3.4878 6.8092 11.9532 46 1 1.4081 2.9587 9.1061 47 1 2.5695 1.8150 9.8255 48 1 2.4112 1.6311 7.3113 49 1 4.0488 2.0244 7.8893 50 1 1.3686 2.5622 5.2973 51 1 2.6550 1.3276 5.1474 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052112574.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:16:43 Heat of formation + Delta-G solvation = 44.942341 kcal Electronic energy + Delta-G solvation = -31123.651153 eV Core-core repulsion = 27059.045971 eV Total energy + Delta-G solvation = -4064.605183 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.32886 -41.09800 -39.73031 -38.23270 -36.00363 -35.13166 -33.56986 -33.03127 -31.87023 -31.68981 -30.22508 -29.63076 -27.76461 -25.78844 -24.71312 -24.54972 -23.93063 -22.92583 -22.27444 -21.54193 -20.83031 -20.36449 -18.90616 -18.77312 -17.72480 -17.56189 -16.88446 -16.79652 -16.35912 -15.79664 -15.71082 -15.64619 -15.46599 -15.28305 -15.12940 -14.91394 -14.84230 -14.70545 -14.38487 -13.99105 -13.94148 -13.67620 -13.35416 -13.30957 -12.98834 -12.75555 -12.61122 -12.54761 -12.40368 -12.22979 -12.04102 -12.01402 -11.96832 -11.84361 -11.52841 -11.44607 -11.39101 -11.05049 -10.93954 -10.58430 -9.99330 -9.50091 -9.34986 -8.69002 -7.88590 -5.32744 0.20690 1.46716 1.47947 1.55223 1.59786 1.81342 2.04004 2.17896 2.50144 2.91350 3.22619 3.26698 3.48197 3.50674 3.66914 3.67834 3.95293 4.01154 4.10720 4.13632 4.21406 4.29799 4.33872 4.35548 4.46982 4.51927 4.55163 4.59755 4.64382 4.67082 4.67844 4.74216 4.81092 4.86479 4.94140 4.97381 5.05462 5.09807 5.15380 5.18875 5.23076 5.29808 5.36678 5.50269 5.60509 5.70278 6.09694 6.19908 6.26562 6.32198 6.36970 6.85790 6.94228 7.13329 7.83494 8.37034 9.17935 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.028465 B = 0.002050 C = 0.001955 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 983.431588 B =13656.834991 C =14317.563650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.050 4.050 3 C 0.087 3.913 4 N -0.532 5.532 5 C 0.239 3.761 6 N -0.546 5.546 7 H 0.437 0.563 8 C -0.104 4.104 9 C 0.605 3.395 10 O -0.558 6.558 11 N -0.616 5.616 12 C 0.090 3.910 13 C -0.114 4.114 14 C 0.071 3.929 15 H 0.054 0.946 16 N -0.526 5.526 17 C 0.055 3.945 18 C 0.184 3.816 19 N -0.615 5.615 20 C -0.265 4.265 21 H 0.064 0.936 22 C -0.049 4.049 23 N -0.933 5.933 24 Si 0.967 3.033 25 H -0.279 1.279 26 H -0.292 1.292 27 H -0.278 1.278 28 C 0.145 3.855 29 C 0.054 3.946 30 C 0.123 3.877 31 H 0.055 0.945 32 H 0.072 0.928 33 H 0.037 0.963 34 H 0.083 0.917 35 H 0.077 0.923 36 H 0.264 0.736 37 H 0.092 0.908 38 H 0.093 0.907 39 H 0.090 0.910 40 H 0.105 0.895 41 H 0.019 0.981 42 H 0.093 0.907 43 H 0.000 1.000 44 H 0.058 0.942 45 H 0.251 0.749 46 H 0.016 0.984 47 H 0.057 0.943 48 H 0.087 0.913 49 H 0.024 0.976 50 H 0.073 0.927 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.695 -1.629 -26.151 26.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.089 4.089 3 C -0.048 4.048 4 N -0.252 5.252 5 C -0.045 4.045 6 N -0.156 5.156 7 H 0.283 0.717 8 C -0.220 4.220 9 C 0.395 3.605 10 O -0.437 6.437 11 N -0.350 5.350 12 C -0.032 4.032 13 C -0.152 4.152 14 C -0.038 4.038 15 H 0.071 0.929 16 N -0.251 5.251 17 C -0.074 4.074 18 C 0.058 3.942 19 N -0.339 5.339 20 C -0.395 4.395 21 H 0.082 0.918 22 C -0.245 4.245 23 N -0.579 5.579 24 Si 0.795 3.205 25 H -0.205 1.205 26 H -0.218 1.218 27 H -0.204 1.204 28 C 0.019 3.981 29 C -0.075 4.075 30 C 0.000 4.000 31 H 0.074 0.926 32 H 0.091 0.909 33 H 0.056 0.944 34 H 0.101 0.899 35 H 0.095 0.905 36 H 0.280 0.720 37 H 0.110 0.890 38 H 0.111 0.889 39 H 0.108 0.892 40 H 0.124 0.876 41 H 0.037 0.963 42 H 0.111 0.889 43 H 0.018 0.982 44 H 0.077 0.923 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.075 0.925 48 H 0.105 0.895 49 H 0.042 0.958 50 H 0.091 0.909 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -0.105 -2.190 -26.723 26.813 hybrid contribution 1.382 0.466 2.392 2.801 sum 1.277 -1.723 -24.332 24.426 Atomic orbital electron populations 1.21544 0.93873 1.02437 1.00941 1.20037 0.96687 0.88969 1.03184 1.21215 0.98960 0.97370 0.87274 1.70141 1.20201 1.04285 1.30573 1.26145 0.98131 0.97762 0.82454 1.43825 1.49528 1.13026 1.09226 0.71682 1.20539 1.17816 0.90014 0.93608 1.16710 0.77321 0.83636 0.82843 1.90814 1.48526 1.21066 1.83253 1.48326 1.65181 1.15320 1.06162 1.22456 0.99973 0.81421 0.99380 1.22694 1.04792 0.96370 0.91370 1.22736 0.96271 0.96421 0.88414 0.92857 1.61925 1.52733 1.09641 1.00773 1.22577 0.93047 0.94974 0.96798 1.20664 0.97326 0.88210 0.87998 1.44411 1.61386 1.13596 1.14501 1.19466 1.33850 0.93438 0.92771 0.91785 1.25758 1.01395 0.96677 1.00669 1.70165 1.43811 1.01401 1.42540 0.85350 0.79283 0.76435 0.79404 1.20473 1.21844 1.20354 1.21085 0.93638 0.90718 0.92641 1.22465 0.99071 0.91509 0.94495 1.22085 1.00025 0.99089 0.78786 0.92555 0.90890 0.94361 0.89853 0.90464 0.72002 0.89039 0.88932 0.89184 0.87631 0.96260 0.88863 0.98170 0.92333 0.93991 0.96583 0.92461 0.89496 0.95804 0.90871 0.91463 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.60 9.89 71.98 0.71 -1.89 16 2 C -0.05 -1.10 5.93 29.85 0.18 -0.92 16 3 C 0.09 1.93 6.40 41.97 0.27 2.20 16 4 N -0.53 -10.30 11.20 -187.59 -2.10 -12.40 16 5 C 0.24 2.49 13.01 180.33 2.35 4.83 16 6 N -0.55 -6.07 5.67 -188.05 -1.07 -7.13 16 7 H 0.44 2.06 5.14 -92.71 -0.48 1.58 16 8 C -0.10 -2.12 6.89 40.01 0.28 -1.84 16 9 C 0.60 14.99 7.82 86.47 0.68 15.67 16 10 O -0.56 -17.65 15.07 -4.30 -0.06 -17.72 16 11 N -0.62 -12.63 3.33 -816.44 -2.72 -15.35 16 12 C 0.09 1.07 5.12 86.73 0.44 1.51 16 13 C -0.11 -1.75 5.35 31.78 0.17 -1.58 16 14 C 0.07 1.61 2.71 46.30 0.13 1.74 16 15 H 0.05 1.25 8.14 -2.39 -0.02 1.23 16 16 N -0.53 -16.11 4.53 -861.97 -3.90 -20.01 16 17 C 0.05 1.89 5.48 86.38 0.47 2.37 16 18 C 0.18 8.60 5.42 86.35 0.47 9.07 16 19 N -0.61 -30.85 3.04 -698.13 -2.12 -32.97 16 20 C -0.27 -14.57 9.63 84.03 0.81 -13.76 16 21 H 0.06 3.45 7.89 -2.91 -0.02 3.42 16 22 C -0.05 -2.74 4.93 84.86 0.42 -2.32 16 23 N -0.93 -54.36 11.15 21.65 0.24 -54.12 16 24 Si 0.97 44.39 29.59 68.60 2.03 46.42 16 25 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 26 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 27 H -0.28 -12.42 7.11 99.48 0.71 -11.72 16 28 C 0.14 6.05 6.69 86.35 0.58 6.63 16 29 C 0.05 1.80 5.48 86.38 0.47 2.27 16 30 C 0.12 2.91 5.32 86.85 0.46 3.38 16 31 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 32 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 33 H 0.04 0.88 8.14 -2.39 -0.02 0.87 16 34 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 35 H 0.08 1.92 6.49 -2.39 -0.02 1.91 16 36 H 0.26 -0.22 8.06 -2.91 -0.02 -0.24 16 37 H 0.09 0.66 7.15 -2.39 -0.02 0.65 16 38 H 0.09 0.71 7.23 -2.39 -0.02 0.69 16 39 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 40 H 0.11 1.23 7.94 -2.39 -0.02 1.21 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.09 2.63 6.87 -2.39 -0.02 2.61 16 43 H 0.00 0.01 8.14 -2.38 -0.02 -0.01 16 44 H 0.06 3.09 6.11 -2.39 -0.01 3.07 16 45 H 0.25 14.15 8.31 -92.71 -0.77 13.38 16 46 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 47 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 48 H 0.09 2.51 6.79 -2.38 -0.02 2.49 16 49 H 0.02 0.83 8.14 -2.38 -0.02 0.81 16 50 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 51 H 0.07 1.76 7.74 -2.38 -0.02 1.74 16 Total: -1.00 -75.35 394.19 -0.36 -75.71 By element: Atomic # 1 Polarization: 9.75 SS G_CDS: 0.46 Total: 10.21 kcal Atomic # 6 Polarization: 18.48 SS G_CDS: 8.88 Total: 27.35 kcal Atomic # 7 Polarization: -130.31 SS G_CDS: -11.66 Total: -141.97 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.06 Total: -17.72 kcal Atomic # 14 Polarization: 44.39 SS G_CDS: 2.03 Total: 46.42 kcal Total: -75.35 -0.36 -75.71 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052112574.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 120.652 kcal (2) G-P(sol) polarization free energy of solvation -75.347 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.305 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.363 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.710 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.942 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds