Wall clock time and date at job start Wed Apr 1 2020 05:05:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34128 * 125.98895 * 2 1 4 4 C 1.30504 * 109.25561 * 179.97438 * 3 2 1 5 5 N 1.35047 * 108.69721 * 359.76828 * 4 3 2 6 6 H 0.97001 * 126.39981 * 180.26342 * 5 4 3 7 7 C 1.34671 * 125.99035 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.58785 * 359.96298 * 7 2 1 9 9 C 1.50696 * 109.47148 * 85.00228 * 8 7 2 10 10 O 1.21280 * 120.00248 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00071 * 180.27401 * 9 8 7 12 12 C 1.47024 * 125.64409 * 359.41572 * 11 9 8 13 13 C 1.54335 * 107.26090 * 178.84963 * 12 11 9 14 14 C 1.55159 * 103.02371 * 338.13934 * 13 12 11 15 15 H 1.09001 * 111.00243 * 277.23424 * 14 13 12 16 16 N 1.46904 * 111.03491 * 153.39504 * 14 13 12 17 17 C 1.46904 * 110.99584 * 192.08440 * 16 14 13 18 18 C 1.53238 * 109.33475 * 172.74385 * 17 16 14 19 19 N 1.47084 * 108.52146 * 53.83821 * 18 17 16 20 20 C 1.36930 * 120.88314 * 128.83069 * 19 18 17 21 21 H 1.08004 * 120.00226 * 333.48606 * 20 19 18 22 22 C 1.38814 * 120.00350 * 153.48989 * 20 19 18 23 23 N 1.31612 * 120.00609 * 159.43843 * 22 20 19 24 24 Si 1.86807 * 119.99388 * 339.44037 * 22 20 19 25 25 H 1.48503 * 109.46994 * 91.97849 * 24 22 20 26 26 H 1.48499 * 109.47135 * 211.97680 * 24 22 20 27 27 H 1.48501 * 109.47165 * 331.97623 * 24 22 20 28 28 C 1.47079 * 118.23513 * 308.80996 * 19 18 17 29 29 C 1.46903 * 111.00041 * 67.78763 * 16 14 13 30 30 C 1.47425 * 125.64951 * 179.72483 * 11 9 8 31 31 H 1.09003 * 109.47012 * 270.00222 * 1 2 3 32 32 H 1.09008 * 109.46796 * 30.00029 * 1 2 3 33 33 H 1.08995 * 109.46931 * 149.99659 * 1 2 3 34 34 H 1.07998 * 125.65105 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.47228 * 324.99986 * 8 7 2 36 36 H 1.09002 * 109.47028 * 204.99894 * 8 7 2 37 37 H 1.08994 * 109.88267 * 298.38821 * 12 11 9 38 38 H 1.08996 * 109.88224 * 59.56611 * 12 11 9 39 39 H 1.09005 * 110.84817 * 219.66925 * 13 12 11 40 40 H 1.09004 * 110.67166 * 96.52674 * 13 12 11 41 41 H 1.08993 * 109.49768 * 292.71037 * 17 16 14 42 42 H 1.09005 * 109.49038 * 52.79479 * 17 16 14 43 43 H 1.08994 * 109.63399 * 294.12420 * 18 17 16 44 44 H 1.09006 * 109.62451 * 173.53762 * 18 17 16 45 45 H 0.96996 * 120.00077 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.62837 * 291.47825 * 28 19 18 47 47 H 1.08992 * 109.78897 * 170.98718 * 28 19 18 48 48 H 1.09000 * 109.49131 * 307.21503 * 29 16 14 49 49 H 1.08998 * 109.49169 * 67.28896 * 29 16 14 50 50 H 1.08999 * 110.36444 * 322.92469 * 30 11 9 51 51 H 1.08993 * 110.36677 * 85.25454 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7095 0.0006 5 7 3.5912 -0.6401 0.0061 6 1 4.3913 -1.1886 0.0113 7 6 2.2984 -1.0896 -0.0005 8 6 1.8472 -2.5275 -0.0003 9 6 1.5779 -2.9697 -1.4156 10 8 1.7363 -2.1935 -2.3340 11 7 1.1553 -4.2258 -1.6603 12 6 0.9284 -5.2662 -0.6466 13 6 0.4241 -6.5237 -1.3858 14 6 -0.1367 -5.9478 -2.7130 15 1 -1.1519 -5.5744 -2.5787 16 7 -0.0847 -6.9495 -3.7862 17 6 -0.3408 -6.3329 -5.0947 18 6 -0.1000 -7.3676 -6.1990 19 7 -0.9079 -8.5611 -5.9052 20 6 -1.7310 -9.1039 -6.8553 21 1 -2.1334 -8.4814 -7.6408 22 6 -2.0485 -10.4545 -6.8090 23 7 -3.1170 -10.9013 -7.4342 24 14 -0.9589 -11.6379 -5.8592 25 1 -1.4644 -11.7688 -4.4690 26 1 -0.9782 -12.9675 -6.5201 27 1 0.4319 -11.1181 -5.8334 28 6 -0.8077 -9.1562 -4.5640 29 6 -1.0205 -8.0511 -3.5239 30 6 0.8502 -4.7861 -2.9894 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5139 33 1 -0.3633 -0.8899 -0.5139 34 1 4.4004 1.3687 0.0011 35 1 0.9355 -2.6222 0.5896 36 1 2.6273 -3.1531 0.4335 37 1 1.8609 -5.4879 -0.1278 38 1 0.1754 -4.9309 0.0666 39 1 -0.3631 -7.0186 -0.8170 40 1 1.2471 -7.2112 -1.5811 41 1 -1.3737 -5.9879 -5.1383 42 1 0.3320 -5.4869 -5.2360 43 1 0.9557 -7.6372 -6.2244 44 1 -0.3979 -6.9518 -7.1616 45 1 -3.3386 -11.8451 -7.4021 46 1 0.1801 -9.5978 -4.4321 47 1 -1.5713 -9.9245 -4.4432 48 1 -0.8408 -8.4512 -2.5260 49 1 -2.0440 -7.6822 -3.5894 50 1 0.3806 -4.0316 -3.6204 51 1 1.7582 -5.1635 -3.4595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052113363.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:02 Heat of formation + Delta-G solvation = 67.751545 kcal Electronic energy + Delta-G solvation = -30860.922664 eV Core-core repulsion = 26797.306563 eV Total energy + Delta-G solvation = -4063.616101 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.41965 -40.34955 -38.71993 -37.05637 -34.39593 -33.39588 -33.10386 -31.83183 -30.84957 -30.53541 -29.46958 -28.51474 -26.52049 -25.67625 -24.04283 -22.73215 -22.66718 -21.96103 -20.69191 -20.19433 -19.51875 -19.37087 -17.99600 -17.55792 -17.19454 -16.44642 -15.86741 -15.48600 -15.41919 -14.90093 -14.62850 -14.44985 -14.24853 -14.13201 -13.99964 -13.77967 -13.55877 -13.23113 -13.05859 -13.00960 -12.92094 -12.74169 -12.56953 -12.36765 -12.33374 -12.23286 -11.89674 -11.54455 -11.37430 -11.08630 -10.90315 -10.61279 -10.31966 -10.28033 -10.23079 -10.08958 -10.04714 -9.84982 -9.48739 -8.92439 -8.68367 -8.50997 -8.13812 -6.99521 -5.96602 -3.32108 1.63838 2.32714 2.59369 2.82970 2.91855 3.28838 3.46989 3.50843 4.00193 4.09422 4.20825 4.38889 4.41768 4.50862 4.51291 4.60408 4.79300 4.91866 4.93206 4.98776 5.04420 5.05687 5.14651 5.26141 5.29563 5.48589 5.55394 5.59277 5.64384 5.65901 5.68029 5.74700 5.77068 5.85265 5.86787 5.90552 5.95633 6.01786 6.06239 6.17462 6.32977 6.47636 6.53938 6.60805 6.83767 7.05555 7.19574 7.31007 7.35236 7.79265 7.87494 7.91891 8.30560 8.90806 9.69564 10.08438 11.19398 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.001983 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.458208 B =14114.386892 C =14376.907003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.022 3.978 3 N -0.492 5.492 4 C 0.190 3.810 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.010 4.010 8 C -0.058 4.058 9 C 0.526 3.474 10 O -0.526 6.526 11 N -0.618 5.618 12 C 0.101 3.899 13 C -0.124 4.124 14 C 0.069 3.931 15 H 0.055 0.945 16 N -0.523 5.523 17 C 0.038 3.962 18 C 0.152 3.848 19 N -0.608 5.608 20 C -0.259 4.259 21 H 0.086 0.914 22 C 0.021 3.979 23 N -0.909 5.909 24 Si 0.884 3.116 25 H -0.289 1.289 26 H -0.304 1.304 27 H -0.270 1.270 28 C 0.130 3.870 29 C 0.044 3.956 30 C 0.116 3.884 31 H 0.067 0.933 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.208 0.792 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.070 0.930 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.089 0.911 41 H 0.035 0.965 42 H 0.068 0.932 43 H 0.031 0.969 44 H 0.066 0.934 45 H 0.262 0.738 46 H 0.032 0.968 47 H 0.075 0.925 48 H 0.067 0.933 49 H 0.037 0.963 50 H 0.077 0.923 51 H 0.079 0.921 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.424 16.265 21.190 29.460 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 N -0.212 5.212 4 C -0.094 4.094 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.126 4.126 8 C -0.100 4.100 9 C 0.314 3.686 10 O -0.402 6.402 11 N -0.354 5.354 12 C -0.022 4.022 13 C -0.162 4.162 14 C -0.041 4.041 15 H 0.073 0.927 16 N -0.248 5.248 17 C -0.091 4.091 18 C 0.026 3.974 19 N -0.332 5.332 20 C -0.387 4.387 21 H 0.103 0.897 22 C -0.178 4.178 23 N -0.552 5.552 24 Si 0.715 3.285 25 H -0.217 1.217 26 H -0.232 1.232 27 H -0.195 1.195 28 C 0.005 3.995 29 C -0.085 4.085 30 C -0.007 4.007 31 H 0.086 0.914 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.134 0.866 36 H 0.118 0.882 37 H 0.088 0.912 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.108 0.892 41 H 0.053 0.947 42 H 0.087 0.913 43 H 0.049 0.951 44 H 0.084 0.916 45 H 0.072 0.928 46 H 0.050 0.950 47 H 0.093 0.907 48 H 0.085 0.915 49 H 0.055 0.945 50 H 0.096 0.904 51 H 0.098 0.902 Dipole moment (debyes) X Y Z Total from point charges 12.573 17.272 20.606 29.682 hybrid contribution 0.543 -1.621 0.547 1.794 sum 13.116 15.651 21.153 29.401 Atomic orbital electron populations 1.20045 0.87800 1.02949 1.01869 1.20445 0.96402 0.87785 1.06050 1.70183 1.00589 1.30628 1.19781 1.24892 0.97372 0.81799 1.05295 1.43121 1.07884 1.08757 1.56862 0.74462 1.20133 0.84196 0.95275 1.12949 1.19978 1.03944 0.90836 0.95200 1.20141 0.77232 0.80142 0.91103 1.90768 1.51345 1.51815 1.46239 1.48456 1.66794 1.11018 1.09129 1.22108 1.00731 0.87963 0.91439 1.22696 1.01945 0.96319 0.95248 1.22750 0.97163 0.91941 0.92238 0.92727 1.62008 1.52484 1.09117 1.01214 1.22703 0.99171 0.97587 0.89610 1.21005 0.94364 0.86943 0.95077 1.44413 1.49211 1.31063 1.08558 1.18930 1.20178 0.92173 1.07414 0.89669 1.25273 0.97522 0.96796 0.98184 1.69832 1.24199 1.14885 1.46294 0.86944 0.82629 0.80563 0.78388 1.21665 1.23191 1.19485 1.21422 0.99469 0.94100 0.84556 1.22652 0.93546 0.92880 0.99409 1.22246 0.99220 0.94881 0.84307 0.91397 0.90945 0.91629 0.77511 0.86603 0.88247 0.91157 0.91176 0.89957 0.89200 0.94668 0.91330 0.95147 0.91564 0.92773 0.94969 0.90700 0.91498 0.94498 0.90443 0.90230 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.65 10.13 36.01 0.36 -0.28 16 2 C 0.02 0.26 7.09 -82.85 -0.59 -0.33 16 3 N -0.49 -5.93 11.25 -10.87 -0.12 -6.05 16 4 C 0.19 1.61 13.04 -90.37 -1.18 0.43 16 5 N -0.56 -4.21 6.15 -10.30 -0.06 -4.27 16 6 H 0.42 1.74 8.96 -40.82 -0.37 1.38 16 7 C -0.01 -0.10 5.73 -81.60 -0.47 -0.56 16 8 C -0.06 -0.41 5.00 -29.04 -0.15 -0.56 16 9 C 0.53 5.68 7.84 -10.99 -0.09 5.60 16 10 O -0.53 -8.08 16.29 5.56 0.09 -7.99 16 11 N -0.62 -6.06 3.33 -170.52 -0.57 -6.63 16 12 C 0.10 0.68 6.49 -3.06 -0.02 0.67 16 13 C -0.12 -1.07 5.62 -24.89 -0.14 -1.21 16 14 C 0.07 0.80 2.72 -65.56 -0.18 0.62 16 15 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 16 N -0.52 -7.84 4.53 -223.77 -1.01 -8.85 16 17 C 0.04 0.62 5.43 -3.70 -0.02 0.60 16 18 C 0.15 2.97 6.69 -3.60 -0.02 2.94 16 19 N -0.61 -14.28 2.82 -172.01 -0.48 -14.76 16 20 C -0.26 -7.17 10.08 -15.06 -0.15 -7.32 16 21 H 0.09 2.52 8.06 -52.48 -0.42 2.10 16 22 C 0.02 0.60 5.24 -17.43 -0.09 0.51 16 23 N -0.91 -27.67 13.97 55.49 0.78 -26.90 16 24 Si 0.88 22.09 24.31 -169.99 -4.13 17.96 16 25 H -0.29 -6.86 6.58 56.52 0.37 -6.49 16 26 H -0.30 -7.75 7.11 56.52 0.40 -7.35 16 27 H -0.27 -6.68 6.61 56.52 0.37 -6.30 16 28 C 0.13 2.76 4.35 -3.60 -0.02 2.75 16 29 C 0.04 0.74 5.52 -3.70 -0.02 0.72 16 30 C 0.12 1.35 5.03 -2.53 -0.01 1.34 16 31 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.07 0.71 8.14 -51.92 -0.42 0.29 16 33 H 0.06 0.60 7.89 -51.93 -0.41 0.19 16 34 H 0.21 0.87 8.06 -52.49 -0.42 0.45 16 35 H 0.12 0.60 8.03 -51.93 -0.42 0.18 16 36 H 0.10 0.44 8.14 -51.93 -0.42 0.02 16 37 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 38 H 0.07 0.36 8.14 -51.93 -0.42 -0.07 16 39 H 0.08 0.63 7.97 -51.93 -0.41 0.22 16 40 H 0.09 0.84 8.14 -51.93 -0.42 0.42 16 41 H 0.04 0.61 8.14 -51.93 -0.42 0.18 16 42 H 0.07 0.96 6.60 -51.93 -0.34 0.62 16 43 H 0.03 0.59 8.14 -51.93 -0.42 0.17 16 44 H 0.07 1.28 7.95 -51.93 -0.41 0.86 16 45 H 0.26 7.59 8.31 -40.82 -0.34 7.25 16 46 H 0.03 0.69 6.94 -51.93 -0.36 0.33 16 47 H 0.08 1.73 4.61 -51.93 -0.24 1.49 16 48 H 0.07 0.94 7.11 -51.93 -0.37 0.57 16 49 H 0.04 0.66 8.14 -51.93 -0.42 0.23 16 50 H 0.08 1.01 7.77 -51.93 -0.40 0.60 16 51 H 0.08 1.00 8.12 -51.93 -0.42 0.57 16 LS Contribution 396.75 15.07 5.98 5.98 Total: -1.00 -36.70 396.75 -10.74 -47.44 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: -8.42 Total: -1.81 kcal Atomic # 6 Polarization: 8.68 SS G_CDS: -2.77 Total: 5.90 kcal Atomic # 7 Polarization: -65.99 SS G_CDS: -1.48 Total: -67.47 kcal Atomic # 8 Polarization: -8.08 SS G_CDS: 0.09 Total: -7.99 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -4.13 Total: 17.96 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -36.70 -10.74 -47.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052113363.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.190 kcal (2) G-P(sol) polarization free energy of solvation -36.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.735 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.438 kcal (6) G-S(sol) free energy of system = (1) + (5) 67.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds