Wall clock time and date at job start Wed Apr 1 2020 05:05:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.34128 * 125.98895 * 2 1 4 4 C 1.30504 * 109.25561 * 179.97438 * 3 2 1 5 5 N 1.35047 * 108.69721 * 359.76828 * 4 3 2 6 6 H 0.97001 * 126.39981 * 180.26342 * 5 4 3 7 7 C 1.34671 * 125.99035 * 180.02562 * 2 1 3 8 8 C 1.50703 * 126.58785 * 359.96298 * 7 2 1 9 9 C 1.50696 * 109.47148 * 85.00228 * 8 7 2 10 10 O 1.21280 * 120.00248 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00071 * 180.27401 * 9 8 7 12 12 C 1.47024 * 125.64409 * 359.41572 * 11 9 8 13 13 C 1.54335 * 107.26090 * 178.84963 * 12 11 9 14 14 C 1.55159 * 103.02371 * 338.13934 * 13 12 11 15 15 H 1.09001 * 111.00243 * 277.23424 * 14 13 12 16 16 N 1.46904 * 111.03491 * 153.39504 * 14 13 12 17 17 C 1.46904 * 110.99584 * 192.08440 * 16 14 13 18 18 C 1.53238 * 109.33475 * 172.74385 * 17 16 14 19 19 N 1.47084 * 108.52146 * 53.83821 * 18 17 16 20 20 C 1.36930 * 120.88314 * 128.83069 * 19 18 17 21 21 H 1.08004 * 120.00226 * 333.48606 * 20 19 18 22 22 C 1.38814 * 120.00350 * 153.48989 * 20 19 18 23 23 N 1.31612 * 120.00609 * 159.43843 * 22 20 19 24 24 Si 1.86807 * 119.99388 * 339.44037 * 22 20 19 25 25 H 1.48503 * 109.46994 * 91.97849 * 24 22 20 26 26 H 1.48499 * 109.47135 * 211.97680 * 24 22 20 27 27 H 1.48501 * 109.47165 * 331.97623 * 24 22 20 28 28 C 1.47079 * 118.23513 * 308.80996 * 19 18 17 29 29 C 1.46903 * 111.00041 * 67.78763 * 16 14 13 30 30 C 1.47425 * 125.64951 * 179.72483 * 11 9 8 31 31 H 1.09003 * 109.47012 * 270.00222 * 1 2 3 32 32 H 1.09008 * 109.46796 * 30.00029 * 1 2 3 33 33 H 1.08995 * 109.46931 * 149.99659 * 1 2 3 34 34 H 1.07998 * 125.65105 * 180.02562 * 4 3 2 35 35 H 1.09001 * 109.47228 * 324.99986 * 8 7 2 36 36 H 1.09002 * 109.47028 * 204.99894 * 8 7 2 37 37 H 1.08994 * 109.88267 * 298.38821 * 12 11 9 38 38 H 1.08996 * 109.88224 * 59.56611 * 12 11 9 39 39 H 1.09005 * 110.84817 * 219.66925 * 13 12 11 40 40 H 1.09004 * 110.67166 * 96.52674 * 13 12 11 41 41 H 1.08993 * 109.49768 * 292.71037 * 17 16 14 42 42 H 1.09005 * 109.49038 * 52.79479 * 17 16 14 43 43 H 1.08994 * 109.63399 * 294.12420 * 18 17 16 44 44 H 1.09006 * 109.62451 * 173.53762 * 18 17 16 45 45 H 0.96996 * 120.00077 * 179.97438 * 23 22 20 46 46 H 1.09004 * 109.62837 * 291.47825 * 28 19 18 47 47 H 1.08992 * 109.78897 * 170.98718 * 28 19 18 48 48 H 1.09000 * 109.49131 * 307.21503 * 29 16 14 49 49 H 1.08998 * 109.49169 * 67.28896 * 29 16 14 50 50 H 1.08999 * 110.36444 * 322.92469 * 30 11 9 51 51 H 1.08993 * 110.36677 * 85.25454 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2952 1.0853 0.0000 4 6 3.5450 0.7095 0.0006 5 7 3.5912 -0.6401 0.0061 6 1 4.3913 -1.1886 0.0113 7 6 2.2984 -1.0896 -0.0005 8 6 1.8472 -2.5275 -0.0003 9 6 1.5779 -2.9697 -1.4156 10 8 1.7363 -2.1935 -2.3340 11 7 1.1553 -4.2258 -1.6603 12 6 0.9284 -5.2662 -0.6466 13 6 0.4241 -6.5237 -1.3858 14 6 -0.1367 -5.9478 -2.7130 15 1 -1.1519 -5.5744 -2.5787 16 7 -0.0847 -6.9495 -3.7862 17 6 -0.3408 -6.3329 -5.0947 18 6 -0.1000 -7.3676 -6.1990 19 7 -0.9079 -8.5611 -5.9052 20 6 -1.7310 -9.1039 -6.8553 21 1 -2.1334 -8.4814 -7.6408 22 6 -2.0485 -10.4545 -6.8090 23 7 -3.1170 -10.9013 -7.4342 24 14 -0.9589 -11.6379 -5.8592 25 1 -1.4644 -11.7688 -4.4690 26 1 -0.9782 -12.9675 -6.5201 27 1 0.4319 -11.1181 -5.8334 28 6 -0.8077 -9.1562 -4.5640 29 6 -1.0205 -8.0511 -3.5239 30 6 0.8502 -4.7861 -2.9894 31 1 -0.3633 0.0000 1.0277 32 1 -0.3633 0.8901 -0.5139 33 1 -0.3633 -0.8899 -0.5139 34 1 4.4004 1.3687 0.0011 35 1 0.9355 -2.6222 0.5896 36 1 2.6273 -3.1531 0.4335 37 1 1.8609 -5.4879 -0.1278 38 1 0.1754 -4.9309 0.0666 39 1 -0.3631 -7.0186 -0.8170 40 1 1.2471 -7.2112 -1.5811 41 1 -1.3737 -5.9879 -5.1383 42 1 0.3320 -5.4869 -5.2360 43 1 0.9557 -7.6372 -6.2244 44 1 -0.3979 -6.9518 -7.1616 45 1 -3.3386 -11.8451 -7.4021 46 1 0.1801 -9.5978 -4.4321 47 1 -1.5713 -9.9245 -4.4432 48 1 -0.8408 -8.4512 -2.5260 49 1 -2.0440 -7.6822 -3.5894 50 1 0.3806 -4.0316 -3.6204 51 1 1.7582 -5.1635 -3.4595 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052113363.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:01 Heat of formation + Delta-G solvation = 40.681350 kcal Electronic energy + Delta-G solvation = -30862.096516 eV Core-core repulsion = 26797.306563 eV Total energy + Delta-G solvation = -4064.789953 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -43.05394 -41.20237 -39.91366 -38.20838 -35.88648 -34.04674 -33.91191 -33.54382 -32.20925 -31.71082 -30.23823 -29.47641 -27.80816 -26.60981 -25.31329 -24.29219 -23.80591 -22.62152 -21.74636 -21.08274 -20.81086 -20.09743 -18.90591 -18.60081 -18.29799 -17.67137 -17.11589 -16.65072 -16.18891 -15.93104 -15.85426 -15.73677 -15.54393 -15.32224 -15.22326 -14.80886 -14.49314 -14.27200 -14.16299 -13.85950 -13.75120 -13.70088 -13.67403 -13.62540 -13.48548 -13.09049 -13.03192 -12.82172 -12.54729 -12.44996 -12.16234 -12.09310 -11.83689 -11.68064 -11.51879 -11.40904 -11.09206 -10.93947 -10.76547 -10.72318 -9.69387 -9.43438 -9.17046 -8.91574 -8.16804 -5.49008 0.99016 1.29884 1.43371 1.53075 1.57228 1.88916 2.18542 2.32059 2.41754 2.86143 3.07417 3.33821 3.35274 3.61193 3.69623 3.79642 3.96537 4.01791 4.09132 4.12396 4.21067 4.32556 4.36569 4.39052 4.44667 4.45701 4.47735 4.49996 4.52416 4.66742 4.68260 4.82169 4.83209 4.83502 4.89558 4.95133 4.98158 5.00631 5.06853 5.08810 5.19960 5.23968 5.26579 5.29977 5.81132 5.81516 6.02547 6.07515 6.18558 6.47588 6.59484 6.89081 7.10586 7.15067 7.60238 8.02121 9.03091 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.029483 B = 0.001983 C = 0.001947 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.458208 B =14114.386892 C =14376.907003 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C -0.015 4.015 3 N -0.541 5.541 4 C 0.192 3.808 5 N -0.554 5.554 6 H 0.434 0.566 7 C -0.014 4.014 8 C -0.049 4.049 9 C 0.524 3.476 10 O -0.582 6.582 11 N -0.616 5.616 12 C 0.100 3.900 13 C -0.118 4.118 14 C 0.069 3.931 15 H 0.052 0.948 16 N -0.523 5.523 17 C 0.051 3.949 18 C 0.148 3.852 19 N -0.624 5.624 20 C -0.251 4.251 21 H 0.048 0.952 22 C -0.039 4.039 23 N -0.958 5.958 24 Si 0.953 3.047 25 H -0.266 1.266 26 H -0.312 1.312 27 H -0.264 1.264 28 C 0.124 3.876 29 C 0.056 3.944 30 C 0.120 3.880 31 H 0.084 0.916 32 H 0.056 0.944 33 H 0.065 0.935 34 H 0.243 0.757 35 H 0.141 0.859 36 H 0.136 0.864 37 H 0.100 0.900 38 H 0.097 0.903 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.020 0.980 42 H 0.090 0.910 43 H 0.038 0.962 44 H 0.057 0.943 45 H 0.262 0.738 46 H 0.038 0.962 47 H 0.055 0.945 48 H 0.104 0.896 49 H 0.022 0.978 50 H 0.055 0.945 51 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.755 15.915 25.265 33.306 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C -0.144 4.144 3 N -0.261 5.261 4 C -0.093 4.093 5 N -0.159 5.159 6 H 0.274 0.726 7 C -0.130 4.130 8 C -0.089 4.089 9 C 0.314 3.686 10 O -0.462 6.462 11 N -0.350 5.350 12 C -0.022 4.022 13 C -0.156 4.156 14 C -0.040 4.040 15 H 0.070 0.930 16 N -0.248 5.248 17 C -0.079 4.079 18 C 0.023 3.977 19 N -0.349 5.349 20 C -0.380 4.380 21 H 0.066 0.934 22 C -0.233 4.233 23 N -0.604 5.604 24 Si 0.781 3.219 25 H -0.192 1.192 26 H -0.241 1.241 27 H -0.188 1.188 28 C -0.001 4.001 29 C -0.073 4.073 30 C -0.004 4.004 31 H 0.103 0.897 32 H 0.075 0.925 33 H 0.084 0.916 34 H 0.259 0.741 35 H 0.159 0.841 36 H 0.154 0.846 37 H 0.118 0.882 38 H 0.115 0.885 39 H 0.118 0.882 40 H 0.106 0.894 41 H 0.038 0.962 42 H 0.108 0.892 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.071 0.929 46 H 0.056 0.944 47 H 0.073 0.927 48 H 0.122 0.878 49 H 0.041 0.959 50 H 0.074 0.926 51 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 14.940 16.917 24.749 33.495 hybrid contribution -0.159 -1.388 -0.789 1.605 sum 14.781 15.528 23.961 32.151 Atomic orbital electron populations 1.20031 0.87445 1.02152 1.02709 1.20839 0.97283 0.88613 1.07622 1.70134 1.02287 1.31914 1.21783 1.25594 0.97433 0.82684 1.03543 1.43133 1.08092 1.08701 1.55940 0.72562 1.20435 0.84583 0.96013 1.11998 1.20072 1.06235 0.89771 0.92839 1.20791 0.76101 0.79677 0.92043 1.90752 1.53858 1.53372 1.48202 1.48513 1.66026 1.11462 1.09005 1.22368 1.03067 0.86000 0.90716 1.22725 1.02270 0.97224 0.93388 1.22773 0.97199 0.91352 0.92670 0.93047 1.61967 1.51578 1.09780 1.01480 1.22482 0.98826 0.96934 0.89610 1.21144 0.93984 0.86381 0.96238 1.44547 1.49402 1.31970 1.08981 1.18847 1.19873 0.91999 1.07299 0.93405 1.25938 0.98629 0.98492 1.00247 1.69971 1.26137 1.15110 1.49227 0.85834 0.80655 0.77362 0.78023 1.19237 1.24134 1.18830 1.21483 0.98856 0.95326 0.84431 1.22445 0.93158 0.92102 0.99575 1.22032 0.98591 0.94325 0.85446 0.89692 0.92476 0.91628 0.74094 0.84148 0.84625 0.88214 0.88491 0.88162 0.89379 0.96185 0.89182 0.94418 0.92494 0.92920 0.94414 0.92721 0.87755 0.95927 0.92621 0.91089 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.21 10.13 71.24 0.72 -0.49 16 2 C -0.02 -0.33 7.09 41.39 0.29 -0.04 16 3 N -0.54 -12.81 11.25 -188.31 -2.12 -14.93 16 4 C 0.19 2.94 13.04 180.26 2.35 5.29 16 5 N -0.55 -7.00 6.15 -186.49 -1.15 -8.15 16 6 H 0.43 2.32 8.96 -92.71 -0.83 1.49 16 7 C -0.01 -0.23 5.73 40.95 0.23 0.00 16 8 C -0.05 -0.50 5.00 29.10 0.15 -0.36 16 9 C 0.52 10.02 7.84 87.66 0.69 10.71 16 10 O -0.58 -17.56 16.29 -3.03 -0.05 -17.61 16 11 N -0.62 -10.08 3.33 -811.80 -2.70 -12.78 16 12 C 0.10 0.82 6.49 86.73 0.56 1.39 16 13 C -0.12 -1.48 5.62 31.79 0.18 -1.30 16 14 C 0.07 1.41 2.72 46.31 0.13 1.54 16 15 H 0.05 1.13 8.14 -2.39 -0.02 1.11 16 16 N -0.52 -14.47 4.53 -861.87 -3.90 -18.37 16 17 C 0.05 1.60 5.43 86.38 0.47 2.07 16 18 C 0.15 5.76 6.69 86.35 0.58 6.33 16 19 N -0.62 -29.39 2.82 -698.13 -1.97 -31.35 16 20 C -0.25 -14.34 10.08 84.04 0.85 -13.50 16 21 H 0.05 3.02 8.06 -2.91 -0.02 2.99 16 22 C -0.04 -2.25 5.24 84.86 0.45 -1.81 16 23 N -0.96 -60.34 13.97 21.65 0.30 -60.04 16 24 Si 0.95 46.01 24.31 68.60 1.67 47.68 16 25 H -0.27 -11.77 6.58 99.48 0.65 -11.11 16 26 H -0.31 -15.41 7.11 99.48 0.71 -14.71 16 27 H -0.26 -12.31 6.61 99.48 0.66 -11.66 16 28 C 0.12 5.05 4.35 86.35 0.38 5.42 16 29 C 0.06 1.74 5.52 86.38 0.48 2.22 16 30 C 0.12 2.56 5.03 86.86 0.44 3.00 16 31 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.06 1.18 8.14 -2.38 -0.02 1.16 16 33 H 0.06 1.15 7.89 -2.39 -0.02 1.13 16 34 H 0.24 1.48 8.06 -2.91 -0.02 1.46 16 35 H 0.14 0.79 8.03 -2.39 -0.02 0.77 16 36 H 0.14 0.44 8.14 -2.39 -0.02 0.42 16 37 H 0.10 0.34 8.14 -2.39 -0.02 0.32 16 38 H 0.10 0.37 8.14 -2.39 -0.02 0.35 16 39 H 0.10 0.96 7.97 -2.38 -0.02 0.94 16 40 H 0.09 1.21 8.14 -2.38 -0.02 1.19 16 41 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 42 H 0.09 2.46 6.60 -2.38 -0.02 2.44 16 43 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 44 H 0.06 2.27 7.95 -2.38 -0.02 2.25 16 45 H 0.26 15.62 8.31 -92.71 -0.77 14.85 16 46 H 0.04 1.51 6.94 -2.38 -0.02 1.50 16 47 H 0.05 2.44 4.61 -2.39 -0.01 2.43 16 48 H 0.10 2.47 7.11 -2.39 -0.02 2.45 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.06 1.43 7.77 -2.39 -0.02 1.41 16 51 H 0.07 1.65 8.12 -2.39 -0.02 1.63 16 Total: -1.00 -85.26 396.75 -0.99 -86.25 By element: Atomic # 1 Polarization: 8.81 SS G_CDS: 0.00 Total: 8.82 kcal Atomic # 6 Polarization: 11.55 SS G_CDS: 8.93 Total: 20.48 kcal Atomic # 7 Polarization: -134.08 SS G_CDS: -11.53 Total: -145.62 kcal Atomic # 8 Polarization: -17.56 SS G_CDS: -0.05 Total: -17.61 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 1.67 Total: 47.68 kcal Total: -85.26 -0.99 -86.25 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052113363.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 126.927 kcal (2) G-P(sol) polarization free energy of solvation -85.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.667 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.985 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -86.246 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.681 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds