Wall clock time and date at job start Wed Apr 1 2020 05:05:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.34130 * 125.98608 * 2 1 4 4 C 1.30501 * 109.25628 * 180.02562 * 3 2 1 5 5 N 1.35052 * 108.69670 * 359.76455 * 4 3 2 6 6 H 0.97002 * 126.39563 * 180.26765 * 5 4 3 7 7 C 1.34667 * 125.99006 * 180.02562 * 2 1 3 8 8 C 1.50693 * 126.59363 * 359.96113 * 7 2 1 9 9 C 1.50700 * 109.47334 * 85.00066 * 8 7 2 10 10 O 1.21280 * 119.99559 * 0.02562 * 9 8 7 11 11 N 1.34773 * 120.00284 * 180.02562 * 9 8 7 12 12 C 1.47024 * 125.64626 * 359.96212 * 11 9 8 13 13 C 1.54323 * 107.26885 * 181.09493 * 12 11 9 14 14 C 1.55153 * 102.94572 * 22.19260 * 13 12 11 15 15 H 1.09000 * 111.00908 * 82.57267 * 14 13 12 16 16 N 1.46899 * 111.03856 * 206.41333 * 14 13 12 17 17 C 1.46896 * 110.99954 * 296.23955 * 16 14 13 18 18 C 1.53235 * 109.34301 * 172.74836 * 17 16 14 19 19 N 1.47080 * 108.52489 * 53.82841 * 18 17 16 20 20 C 1.36937 * 120.88496 * 128.79382 * 19 18 17 21 21 H 1.08003 * 119.99845 * 208.80026 * 20 19 18 22 22 C 1.38809 * 119.99970 * 28.79834 * 20 19 18 23 23 N 1.31626 * 119.99708 * 14.68954 * 22 20 19 24 24 Si 1.86797 * 120.00138 * 194.69214 * 22 20 19 25 25 H 1.48498 * 109.47054 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47171 * 120.00119 * 24 22 20 27 27 H 1.48504 * 109.46909 * 239.99862 * 24 22 20 28 28 C 1.47088 * 118.23227 * 308.81872 * 19 18 17 29 29 C 1.46901 * 111.00021 * 171.93633 * 16 14 13 30 30 C 1.47423 * 125.65185 * 179.97438 * 11 9 8 31 31 H 1.08997 * 109.47104 * 270.00019 * 1 2 3 32 32 H 1.08999 * 109.47187 * 29.99634 * 1 2 3 33 33 H 1.08999 * 109.47116 * 150.00132 * 1 2 3 34 34 H 1.07994 * 125.65239 * 179.97438 * 4 3 2 35 35 H 1.09004 * 109.47127 * 324.99661 * 8 7 2 36 36 H 1.09002 * 109.47062 * 205.00521 * 8 7 2 37 37 H 1.08995 * 109.88691 * 61.67850 * 12 11 9 38 38 H 1.09005 * 110.00852 * 300.58049 * 12 11 9 39 39 H 1.09002 * 110.71828 * 263.82517 * 13 12 11 40 40 H 1.09001 * 110.87210 * 140.62723 * 13 12 11 41 41 H 1.09002 * 109.48983 * 292.70745 * 17 16 14 42 42 H 1.08996 * 109.49781 * 52.78191 * 17 16 14 43 43 H 1.09001 * 109.63062 * 294.11529 * 18 17 16 44 44 H 1.09003 * 109.62863 * 173.53852 * 18 17 16 45 45 H 0.96999 * 119.99396 * 180.02562 * 23 22 20 46 46 H 1.08998 * 109.62483 * 291.46933 * 28 19 18 47 47 H 1.09000 * 109.62490 * 170.89654 * 28 19 18 48 48 H 1.09002 * 109.49345 * 307.21042 * 29 16 14 49 49 H 1.08994 * 109.49140 * 67.26517 * 29 16 14 50 50 H 1.09002 * 110.36356 * 36.99522 * 30 11 9 51 51 H 1.08998 * 110.36576 * 274.67883 * 30 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2951 1.0853 0.0000 4 6 3.5449 0.7097 -0.0006 5 7 3.5913 -0.6401 0.0043 6 1 4.3914 -1.1885 0.0088 7 6 2.2984 -1.0896 -0.0005 8 6 1.8473 -2.5275 -0.0003 9 6 1.5780 -2.9697 -1.4156 10 8 1.7372 -2.1937 -2.3339 11 7 1.1603 -4.2274 -1.6607 12 6 0.9282 -5.2661 -0.6465 13 6 0.4875 -6.5437 -1.3916 14 6 1.0411 -6.3192 -2.8236 15 1 2.0931 -6.5978 -2.8840 16 7 0.2468 -7.0541 -3.8172 17 6 0.3418 -8.5037 -3.5992 18 6 -0.6366 -9.2226 -4.5341 19 7 -0.3745 -8.7825 -5.9128 20 6 -0.1878 -9.6936 -6.9180 21 1 0.4320 -9.4425 -7.7661 22 6 -0.7950 -10.9397 -6.8468 23 7 -1.7664 -11.1501 -5.9838 24 14 -0.2337 -12.3181 -7.9757 25 1 0.8648 -11.8283 -8.8466 26 1 0.2525 -13.4594 -7.1594 27 1 -1.3727 -12.7623 -8.8188 28 6 -0.3176 -7.3378 -6.1832 29 6 0.6483 -6.6931 -5.1834 30 6 0.8607 -4.7895 -2.9902 31 1 -0.3633 0.0000 1.0276 32 1 -0.3633 0.8900 -0.5138 33 1 -0.3633 -0.8900 -0.5138 34 1 4.4003 1.3689 -0.0011 35 1 0.9357 -2.6222 0.5897 36 1 2.6275 -3.1529 0.4336 37 1 0.1426 -4.9468 0.0383 38 1 1.8471 -5.4584 -0.0925 39 1 -0.5993 -6.6258 -1.4067 40 1 0.9336 -7.4299 -0.9403 41 1 1.3579 -8.8373 -3.8099 42 1 0.0906 -8.7331 -2.5637 43 1 -1.6602 -8.9699 -4.2575 44 1 -0.4896 -10.3001 -4.4595 45 1 -2.1905 -12.0211 -5.9339 46 1 -1.3105 -6.9040 -6.0650 47 1 0.0402 -7.1693 -7.1989 48 1 0.6193 -5.6094 -5.2967 49 1 1.6602 -7.0516 -5.3717 50 1 1.5603 -4.4036 -3.7317 51 1 -0.1646 -4.5572 -3.2780 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052113364.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:05:07 Heat of formation + Delta-G solvation = 61.089796 kcal Electronic energy + Delta-G solvation = -30734.643902 eV Core-core repulsion = 26670.738926 eV Total energy + Delta-G solvation = -4063.904977 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -42.38342 -40.25626 -38.53708 -36.83979 -34.23029 -33.36009 -33.05898 -31.71424 -30.43126 -30.26909 -29.32495 -28.29804 -26.40782 -25.60790 -23.80490 -22.87236 -22.28845 -21.88477 -20.52388 -20.10975 -19.34718 -19.18337 -17.94437 -17.47743 -17.13268 -16.36966 -15.75054 -15.37320 -15.11707 -14.89485 -14.50397 -14.27152 -14.12835 -14.00364 -13.61731 -13.46760 -13.40156 -13.24384 -13.03877 -12.99194 -12.90669 -12.76818 -12.43289 -12.32426 -12.29943 -11.89753 -11.35025 -11.25228 -11.07234 -10.95121 -10.78598 -10.45484 -10.32147 -10.23617 -10.19328 -10.08252 -9.99999 -9.78031 -9.62103 -8.84432 -8.54634 -8.47287 -7.94964 -6.66536 -5.81049 -3.24677 1.67683 2.38894 2.65372 2.86548 2.96735 3.34418 3.42496 3.44546 4.15877 4.18202 4.25907 4.44126 4.47331 4.50765 4.56811 4.69625 4.87464 4.96417 5.02560 5.08405 5.15529 5.23330 5.34970 5.37433 5.42286 5.52661 5.66151 5.70823 5.76759 5.78855 5.80947 5.83921 5.89586 5.91103 5.99344 6.10410 6.12821 6.20698 6.29187 6.49426 6.51347 6.65164 6.90538 7.09017 7.18699 7.28400 7.51293 7.58612 7.65249 7.78572 7.82550 7.93882 8.42081 9.19107 9.81391 10.40780 11.27800 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031394 B = 0.001863 C = 0.001837 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 891.665248 B =15024.981866 C =15240.987312 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.022 3.978 3 N -0.492 5.492 4 C 0.190 3.810 5 N -0.563 5.563 6 H 0.418 0.582 7 C -0.010 4.010 8 C -0.059 4.059 9 C 0.526 3.474 10 O -0.528 6.528 11 N -0.618 5.618 12 C 0.101 3.899 13 C -0.123 4.123 14 C 0.069 3.931 15 H 0.049 0.951 16 N -0.520 5.520 17 C 0.036 3.964 18 C 0.179 3.821 19 N -0.595 5.595 20 C -0.251 4.251 21 H 0.065 0.935 22 C 0.002 3.998 23 N -0.903 5.903 24 Si 0.903 3.097 25 H -0.278 1.278 26 H -0.289 1.289 27 H -0.290 1.290 28 C 0.149 3.851 29 C 0.041 3.959 30 C 0.117 3.883 31 H 0.067 0.933 32 H 0.071 0.929 33 H 0.066 0.934 34 H 0.208 0.792 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.072 0.928 38 H 0.067 0.933 39 H 0.091 0.909 40 H 0.081 0.919 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.253 0.747 46 H 0.027 0.973 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.074 0.926 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.412 15.970 17.991 25.832 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.107 4.107 3 N -0.212 5.212 4 C -0.094 4.094 5 N -0.166 5.166 6 H 0.255 0.745 7 C -0.125 4.125 8 C -0.100 4.100 9 C 0.313 3.687 10 O -0.403 6.403 11 N -0.353 5.353 12 C -0.023 4.023 13 C -0.162 4.162 14 C -0.041 4.041 15 H 0.067 0.933 16 N -0.246 5.246 17 C -0.093 4.093 18 C 0.053 3.947 19 N -0.319 5.319 20 C -0.381 4.381 21 H 0.083 0.917 22 C -0.197 4.197 23 N -0.548 5.548 24 Si 0.733 3.267 25 H -0.203 1.203 26 H -0.216 1.216 27 H -0.217 1.217 28 C 0.022 3.978 29 C -0.088 4.088 30 C -0.006 4.006 31 H 0.086 0.914 32 H 0.090 0.910 33 H 0.084 0.916 34 H 0.225 0.775 35 H 0.134 0.866 36 H 0.117 0.883 37 H 0.091 0.909 38 H 0.085 0.915 39 H 0.110 0.890 40 H 0.099 0.901 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.063 0.937 46 H 0.045 0.955 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.046 0.954 50 H 0.092 0.908 51 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges 8.616 17.282 17.563 26.103 hybrid contribution 1.978 -2.170 -0.624 3.002 sum 10.594 15.112 16.939 25.051 Atomic orbital electron populations 1.20045 0.87763 1.02984 1.01870 1.20448 0.96422 0.87768 1.06053 1.70179 1.00584 1.30640 1.19789 1.24883 0.97371 0.81804 1.05366 1.43124 1.07890 1.08750 1.56884 0.74488 1.20144 0.84173 0.95310 1.12861 1.19982 1.03945 0.90782 0.95277 1.20127 0.77178 0.80276 0.91076 1.90763 1.51543 1.51780 1.46235 1.48460 1.66734 1.10967 1.09158 1.22103 1.00685 0.88035 0.91432 1.22691 1.03131 0.96016 0.94316 1.22746 0.95718 0.92760 0.92892 0.93303 1.62023 1.53067 1.07311 1.02157 1.22920 0.99971 0.86080 1.00288 1.20844 0.93838 0.98197 0.81787 1.44106 1.83719 0.99536 1.04513 1.19221 1.23154 0.94398 1.01337 0.91719 1.25090 0.96086 0.99590 0.98895 1.70019 1.23675 1.22491 1.38623 0.86216 0.78060 0.82289 0.80171 1.20313 1.21601 1.21656 1.20981 0.95788 0.85915 0.95097 1.22677 0.98238 0.98941 0.88933 1.22249 1.02009 0.92230 0.84106 0.91406 0.90963 0.91552 0.77539 0.86564 0.88305 0.90950 0.91510 0.88997 0.90056 0.95707 0.91908 0.95452 0.89491 0.93662 0.95545 0.92570 0.91851 0.95362 0.90757 0.90026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.67 10.13 36.01 0.36 -0.30 16 2 C 0.02 0.26 7.09 -82.85 -0.59 -0.33 16 3 N -0.49 -6.07 11.25 -10.87 -0.12 -6.20 16 4 C 0.19 1.66 13.04 -90.37 -1.18 0.48 16 5 N -0.56 -4.42 6.15 -10.30 -0.06 -4.48 16 6 H 0.42 1.90 8.96 -40.82 -0.37 1.54 16 7 C -0.01 -0.09 5.73 -81.60 -0.47 -0.56 16 8 C -0.06 -0.45 5.00 -29.04 -0.15 -0.59 16 9 C 0.53 6.00 7.84 -10.99 -0.09 5.92 16 10 O -0.53 -8.40 16.29 5.56 0.09 -8.31 16 11 N -0.62 -6.55 3.33 -170.51 -0.57 -7.12 16 12 C 0.10 0.77 6.49 -3.06 -0.02 0.75 16 13 C -0.12 -1.20 5.43 -24.90 -0.14 -1.34 16 14 C 0.07 0.87 2.71 -65.55 -0.18 0.70 16 15 H 0.05 0.65 8.14 -51.93 -0.42 0.23 16 16 N -0.52 -8.49 4.53 -223.78 -1.01 -9.50 16 17 C 0.04 0.66 5.49 -3.70 -0.02 0.64 16 18 C 0.18 4.16 5.39 -3.60 -0.02 4.14 16 19 N -0.60 -14.78 3.03 -172.01 -0.52 -15.30 16 20 C -0.25 -6.84 9.62 -15.06 -0.14 -6.98 16 21 H 0.07 1.74 7.87 -52.48 -0.41 1.33 16 22 C 0.00 0.05 4.98 -17.43 -0.09 -0.04 16 23 N -0.90 -25.83 11.17 55.49 0.62 -25.21 16 24 Si 0.90 21.45 29.58 -169.99 -5.03 16.42 16 25 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 26 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 27 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 28 C 0.15 3.12 6.69 -3.60 -0.02 3.10 16 29 C 0.04 0.72 5.46 -3.70 -0.02 0.70 16 30 C 0.12 1.47 5.23 -2.52 -0.01 1.46 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 33 H 0.07 0.63 7.89 -51.93 -0.41 0.22 16 34 H 0.21 0.93 8.06 -52.49 -0.42 0.51 16 35 H 0.12 0.66 8.03 -51.93 -0.42 0.24 16 36 H 0.10 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.07 0.43 8.14 -51.93 -0.42 0.00 16 38 H 0.07 0.38 8.14 -51.93 -0.42 -0.04 16 39 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 40 H 0.08 0.71 7.94 -51.93 -0.41 0.30 16 41 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.98 6.93 -51.93 -0.36 0.62 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.24 6.22 -51.93 -0.32 1.92 16 45 H 0.25 6.98 8.31 -40.82 -0.34 6.64 16 46 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 47 H 0.06 1.14 7.95 -51.93 -0.41 0.73 16 48 H 0.06 0.97 6.73 -51.93 -0.35 0.63 16 49 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 50 H 0.07 1.03 7.74 -51.93 -0.40 0.63 16 51 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 LS Contribution 403.33 15.07 6.08 6.08 Total: -1.00 -35.42 403.33 -11.79 -47.21 By element: Atomic # 1 Polarization: 7.17 SS G_CDS: -8.50 Total: -1.32 kcal Atomic # 6 Polarization: 10.51 SS G_CDS: -2.76 Total: 7.74 kcal Atomic # 7 Polarization: -66.14 SS G_CDS: -1.67 Total: -67.81 kcal Atomic # 8 Polarization: -8.40 SS G_CDS: 0.09 Total: -8.31 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -5.03 Total: 16.42 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.42 -11.79 -47.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052113364.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 108.295 kcal (2) G-P(sol) polarization free energy of solvation -35.420 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 72.875 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.785 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.206 kcal (6) G-S(sol) free energy of system = (1) + (5) 61.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds