Wall clock time and date at job start Wed Apr 1 2020 05:21:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30499 * 125.64428 * 2 1 4 4 C 1.34129 * 109.25103 * 179.97438 * 3 2 1 5 5 C 1.34671 * 108.02264 * 359.97438 * 4 3 2 6 6 N 1.35041 * 125.65036 * 179.68766 * 2 1 3 7 7 C 1.46503 * 126.39659 * 0.02562 * 6 2 1 8 8 C 1.50698 * 109.46959 * 84.99942 * 7 6 2 9 9 O 1.21288 * 120.00455 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99730 * 179.97438 * 8 7 6 11 11 C 1.47026 * 125.64827 * 359.68797 * 10 8 7 12 12 C 1.54335 * 107.26372 * 178.84846 * 11 10 8 13 13 C 1.55157 * 103.02052 * 338.13964 * 12 11 10 14 14 H 1.08999 * 111.00688 * 277.22977 * 13 12 11 15 15 N 1.46904 * 111.03204 * 153.39626 * 13 12 11 16 16 C 1.46903 * 110.99684 * 192.08646 * 15 13 12 17 17 C 1.53240 * 109.33747 * 172.74336 * 16 15 13 18 18 N 1.47081 * 108.51980 * 53.83450 * 17 16 15 19 19 C 1.36933 * 120.88085 * 128.83560 * 18 17 16 20 20 H 1.08006 * 119.99979 * 206.56391 * 19 18 17 21 21 C 1.38813 * 120.00496 * 26.56092 * 19 18 17 22 22 N 1.31621 * 119.99836 * 17.01903 * 21 19 18 23 23 Si 1.86796 * 120.00424 * 197.01950 * 21 19 18 24 24 H 1.48495 * 109.47449 * 89.99680 * 23 21 19 25 25 H 1.48493 * 109.47204 * 209.99954 * 23 21 19 26 26 H 1.48502 * 109.47051 * 329.99834 * 23 21 19 27 27 C 1.47081 * 118.23418 * 308.80869 * 18 17 16 28 28 C 1.46896 * 111.00059 * 67.78696 * 15 13 12 29 29 C 1.47422 * 125.64823 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.46921 * 90.02541 * 1 2 3 31 31 H 1.08998 * 109.46885 * 210.02475 * 1 2 3 32 32 H 1.08998 * 109.47180 * 330.02452 * 1 2 3 33 33 H 1.08005 * 125.98835 * 180.02562 * 4 3 2 34 34 H 1.08002 * 126.59173 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.46654 * 204.99138 * 7 6 2 36 36 H 1.08998 * 109.46873 * 324.99352 * 7 6 2 37 37 H 1.08998 * 109.88121 * 298.39667 * 11 10 8 38 38 H 1.08998 * 109.87663 * 59.56244 * 11 10 8 39 39 H 1.08995 * 110.84944 * 219.67509 * 12 11 10 40 40 H 1.08996 * 110.66348 * 96.52332 * 12 11 10 41 41 H 1.08991 * 109.49640 * 292.70699 * 16 15 13 42 42 H 1.09000 * 109.49212 * 52.78668 * 16 15 13 43 43 H 1.09001 * 109.63348 * 294.12027 * 17 16 15 44 44 H 1.09000 * 109.62604 * 173.53767 * 17 16 15 45 45 H 0.96997 * 120.00459 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.62773 * 291.47655 * 27 18 17 47 47 H 1.08998 * 109.78289 * 170.98838 * 27 18 17 48 48 H 1.08992 * 109.49151 * 307.20763 * 28 15 13 49 49 H 1.08994 * 109.49214 * 67.29345 * 28 15 13 50 50 H 1.09006 * 110.36990 * 322.92923 * 29 10 8 51 51 H 1.09000 * 110.36672 * 85.25099 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6819 0.0006 5 6 3.5926 -0.6642 0.0015 6 7 2.2941 -1.0973 0.0060 7 6 1.8425 -2.4910 0.0131 8 6 1.5704 -2.9380 -1.4001 9 8 1.7368 -2.1681 -2.3225 10 7 1.1421 -4.1934 -1.6392 11 6 0.9059 -5.2267 -0.6203 12 6 0.3978 -6.4858 -1.3541 13 6 -0.1550 -5.9146 -2.6866 14 1 -1.1687 -5.5352 -2.5584 15 7 -0.1042 -6.9229 -3.7538 16 6 -0.3521 -6.3125 -5.0668 17 6 -0.1127 -7.3549 -6.1643 18 7 -0.9279 -8.5424 -5.8666 19 6 -1.7503 -9.0865 -6.8167 20 1 -2.6267 -9.6426 -6.5179 21 6 -1.4578 -8.9233 -8.1638 22 7 -0.2506 -8.5527 -8.5349 23 14 -2.7774 -9.2296 -9.4499 24 1 -3.5153 -7.9680 -9.7124 25 1 -2.1434 -9.7028 -10.7066 26 1 -3.7226 -10.2617 -8.9533 27 6 -0.8358 -9.1302 -4.5215 28 6 -1.0468 -8.0179 -3.4887 29 6 0.8386 -4.7596 -2.9660 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.4098 1.3412 0.0011 34 1 4.4777 -1.2831 0.0018 35 1 2.6165 -3.1214 0.4508 36 1 0.9296 -2.5741 0.6027 37 1 1.8354 -5.4502 -0.0966 38 1 0.1521 -4.8833 0.0881 39 1 -0.3941 -6.9732 -0.7855 40 1 1.2180 -7.1786 -1.5423 41 1 -1.3831 -5.9624 -5.1164 42 1 0.3255 -5.4709 -5.2105 43 1 0.9418 -7.6302 -6.1841 44 1 -0.4048 -6.9431 -7.1303 45 1 -0.0463 -8.4383 -9.4762 46 1 0.1491 -9.5761 -4.3835 47 1 -1.6039 -9.8938 -4.3992 48 1 -0.8729 -8.4132 -2.4880 49 1 -2.0681 -7.6441 -3.5602 50 1 0.3750 -4.0063 -3.6030 51 1 1.7463 -5.1443 -3.4310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052117261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:30 Heat of formation + Delta-G solvation = 77.751455 kcal Electronic energy + Delta-G solvation = -30894.275394 eV Core-core repulsion = 26831.092921 eV Total energy + Delta-G solvation = -4063.182473 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -42.38753 -40.38076 -38.64410 -36.95957 -34.40667 -34.18234 -31.98188 -31.79266 -30.89817 -29.92844 -29.22678 -27.91587 -26.96028 -25.86071 -23.91335 -22.96119 -22.32273 -21.63928 -20.76521 -20.33679 -19.39744 -19.21990 -17.87417 -17.41905 -17.15453 -16.44820 -15.86439 -15.52143 -14.96003 -14.82958 -14.53912 -14.45515 -14.17330 -14.07541 -13.91752 -13.57853 -13.48778 -13.26372 -13.19540 -13.10885 -12.98538 -12.84324 -12.61452 -12.51540 -12.46895 -11.92399 -11.51749 -11.32618 -11.12456 -11.01862 -10.78755 -10.62972 -10.49224 -10.36517 -10.18802 -10.09501 -9.79641 -9.73659 -9.65358 -9.00941 -8.55331 -8.53611 -8.00256 -6.72570 -5.82215 -3.23928 1.67328 2.12897 2.25952 2.72806 2.98087 3.35242 3.42224 3.43428 3.88628 4.07933 4.13934 4.24139 4.37628 4.42265 4.46253 4.46949 4.51516 4.74176 4.99346 5.04319 5.12979 5.21076 5.22016 5.25896 5.35014 5.37078 5.50516 5.57245 5.62166 5.66514 5.72883 5.78648 5.80403 5.83502 6.01002 6.02450 6.06345 6.15665 6.24965 6.44468 6.54052 6.60783 6.84222 6.86642 7.07834 7.16882 7.45339 7.55014 7.62817 7.69629 7.76500 7.89936 8.38920 9.16689 9.79927 10.37815 11.26570 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.002023 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.770944 B =13840.585651 C =14443.057864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C 0.219 3.781 3 N -0.492 5.492 4 C -0.025 4.025 5 C -0.052 4.052 6 N -0.444 5.444 7 C 0.091 3.909 8 C 0.509 3.491 9 O -0.518 6.518 10 N -0.614 5.614 11 C 0.097 3.903 12 C -0.122 4.122 13 C 0.069 3.931 14 H 0.051 0.949 15 N -0.521 5.521 16 C 0.032 3.968 17 C 0.178 3.822 18 N -0.595 5.595 19 C -0.253 4.253 20 H 0.066 0.934 21 C 0.001 3.999 22 N -0.903 5.903 23 Si 0.903 3.097 24 H -0.288 1.288 25 H -0.291 1.291 26 H -0.279 1.279 27 C 0.149 3.851 28 C 0.046 3.954 29 C 0.116 3.884 30 H 0.082 0.918 31 H 0.069 0.931 32 H 0.091 0.909 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.122 0.878 36 H 0.121 0.879 37 H 0.073 0.927 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.091 0.909 41 H 0.027 0.973 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.089 0.911 45 H 0.254 0.746 46 H 0.025 0.975 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.028 0.972 50 H 0.078 0.922 51 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 9.612 22.945 25.150 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.043 4.043 3 N -0.211 5.211 4 C -0.172 4.172 5 C -0.183 4.183 6 N -0.127 5.127 7 C -0.036 4.036 8 C 0.295 3.705 9 O -0.393 6.393 10 N -0.349 5.349 11 C -0.026 4.026 12 C -0.160 4.160 13 C -0.041 4.041 14 H 0.069 0.931 15 N -0.246 5.246 16 C -0.097 4.097 17 C 0.052 3.948 18 N -0.318 5.318 19 C -0.383 4.383 20 H 0.084 0.916 21 C -0.197 4.197 22 N -0.547 5.547 23 Si 0.733 3.267 24 H -0.215 1.215 25 H -0.217 1.217 26 H -0.205 1.205 27 C 0.022 3.978 28 C -0.084 4.084 29 C -0.006 4.006 30 H 0.101 0.899 31 H 0.088 0.912 32 H 0.109 0.891 33 H 0.187 0.813 34 H 0.190 0.810 35 H 0.140 0.860 36 H 0.138 0.862 37 H 0.091 0.909 38 H 0.088 0.912 39 H 0.100 0.900 40 H 0.110 0.890 41 H 0.045 0.955 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.107 0.893 45 H 0.064 0.936 46 H 0.043 0.957 47 H 0.074 0.926 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.096 0.904 51 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges 4.023 10.591 22.264 24.981 hybrid contribution -0.975 -0.820 -0.740 1.473 sum 3.048 9.771 21.524 23.834 Atomic orbital electron populations 1.20199 0.85140 1.03616 1.03850 1.23253 0.95629 0.81138 1.04275 1.70251 1.02343 1.27986 1.20551 1.22240 0.94771 0.92680 1.07556 1.22641 0.86613 0.97000 1.12086 1.44855 1.06895 1.05772 1.55224 1.21617 1.04099 0.81908 0.95966 1.20310 0.78133 0.80897 0.91133 1.90824 1.50924 1.52189 1.45329 1.48431 1.66040 1.10852 1.09623 1.22178 1.00763 0.88347 0.91288 1.22683 1.01980 0.96126 0.95257 1.22735 0.96776 0.92081 0.92481 0.93070 1.62049 1.52104 1.09110 1.01327 1.22974 0.98358 0.98640 0.89736 1.20868 0.94124 0.84992 0.94785 1.44121 1.50188 1.29100 1.08438 1.19189 1.01897 1.31221 0.85980 0.91609 1.25035 0.95936 1.01212 0.97536 1.70021 1.17674 1.51486 1.15520 0.86279 0.81233 0.77932 0.81255 1.21480 1.21719 1.20471 1.20962 0.98662 0.92625 0.85526 1.22634 0.92994 0.93373 0.99377 1.22306 0.99592 0.94986 0.83748 0.89893 0.91245 0.89053 0.81261 0.80966 0.85964 0.86159 0.90920 0.91215 0.89985 0.89027 0.95499 0.91907 0.95481 0.89256 0.93552 0.95666 0.92566 0.91864 0.95330 0.90370 0.89835 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.58 10.19 36.01 0.37 -0.21 16 2 C 0.22 2.55 7.89 -155.42 -1.23 1.32 16 3 N -0.49 -6.65 11.25 -10.81 -0.12 -6.78 16 4 C -0.03 -0.29 11.87 -17.81 -0.21 -0.50 16 5 C -0.05 -0.52 11.58 -16.56 -0.19 -0.71 16 6 N -0.44 -4.49 2.24 -115.19 -0.26 -4.75 16 7 C 0.09 0.63 5.56 -5.19 -0.03 0.61 16 8 C 0.51 5.56 7.92 -10.99 -0.09 5.47 16 9 O -0.52 -8.27 16.68 5.55 0.09 -8.18 16 10 N -0.61 -6.05 3.33 -170.52 -0.57 -6.61 16 11 C 0.10 0.62 6.49 -3.06 -0.02 0.60 16 12 C -0.12 -1.03 5.62 -24.89 -0.14 -1.17 16 13 C 0.07 0.83 2.72 -65.57 -0.18 0.65 16 14 H 0.05 0.64 8.14 -51.93 -0.42 0.22 16 15 N -0.52 -8.20 4.53 -223.79 -1.01 -9.21 16 16 C 0.03 0.59 5.43 -3.70 -0.02 0.57 16 17 C 0.18 4.18 5.42 -3.60 -0.02 4.16 16 18 N -0.60 -14.58 3.04 -172.01 -0.52 -15.11 16 19 C -0.25 -6.83 9.63 -15.06 -0.15 -6.97 16 20 H 0.07 1.74 7.88 -52.48 -0.41 1.32 16 21 C 0.00 0.04 4.94 -17.43 -0.09 -0.05 16 22 N -0.90 -25.94 11.15 55.49 0.62 -25.33 16 23 Si 0.90 21.48 29.59 -169.99 -5.03 16.45 16 24 H -0.29 -6.85 7.11 56.52 0.40 -6.44 16 25 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 26 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 27 C 0.15 2.98 6.69 -3.60 -0.02 2.95 16 28 C 0.05 0.73 5.52 -3.70 -0.02 0.71 16 29 C 0.12 1.44 5.03 -2.54 -0.01 1.42 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.07 0.39 7.16 -51.93 -0.37 0.02 16 32 H 0.09 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.17 1.48 8.06 -52.48 -0.42 1.05 16 34 H 0.17 1.19 8.06 -52.49 -0.42 0.77 16 35 H 0.12 0.50 8.14 -51.93 -0.42 0.08 16 36 H 0.12 0.50 7.21 -51.93 -0.37 0.13 16 37 H 0.07 0.33 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.30 8.14 -51.93 -0.42 -0.13 16 39 H 0.08 0.58 7.97 -51.93 -0.41 0.16 16 40 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 41 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 42 H 0.06 1.08 6.60 -51.93 -0.34 0.73 16 43 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 44 H 0.09 2.35 6.12 -51.93 -0.32 2.03 16 45 H 0.25 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 47 H 0.06 1.08 7.96 -51.93 -0.41 0.67 16 48 H 0.06 0.82 7.11 -51.93 -0.37 0.45 16 49 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 50 H 0.08 1.10 7.77 -51.93 -0.40 0.69 16 51 H 0.08 1.15 8.12 -51.93 -0.42 0.73 16 LS Contribution 403.48 15.07 6.08 6.08 Total: -1.00 -35.38 403.48 -11.24 -46.61 By element: Atomic # 1 Polarization: 6.43 SS G_CDS: -8.47 Total: -2.04 kcal Atomic # 6 Polarization: 10.90 SS G_CDS: -2.04 Total: 8.86 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -1.86 Total: -67.78 kcal Atomic # 8 Polarization: -8.27 SS G_CDS: 0.09 Total: -8.18 kcal Atomic # 14 Polarization: 21.48 SS G_CDS: -5.03 Total: 16.45 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.38 -11.24 -46.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052117261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 124.364 kcal (2) G-P(sol) polarization free energy of solvation -35.375 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 88.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.751 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds