Wall clock time and date at job start Wed Apr 1 2020 05:21:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30499 * 125.64428 * 2 1 4 4 C 1.34129 * 109.25103 * 179.97438 * 3 2 1 5 5 C 1.34671 * 108.02264 * 359.97438 * 4 3 2 6 6 N 1.35041 * 125.65036 * 179.68766 * 2 1 3 7 7 C 1.46503 * 126.39659 * 0.02562 * 6 2 1 8 8 C 1.50698 * 109.46959 * 84.99942 * 7 6 2 9 9 O 1.21288 * 120.00455 * 359.97438 * 8 7 6 10 10 N 1.34780 * 119.99730 * 179.97438 * 8 7 6 11 11 C 1.47026 * 125.64827 * 359.68797 * 10 8 7 12 12 C 1.54335 * 107.26372 * 178.84846 * 11 10 8 13 13 C 1.55157 * 103.02052 * 338.13964 * 12 11 10 14 14 H 1.08999 * 111.00688 * 277.22977 * 13 12 11 15 15 N 1.46904 * 111.03204 * 153.39626 * 13 12 11 16 16 C 1.46903 * 110.99684 * 192.08646 * 15 13 12 17 17 C 1.53240 * 109.33747 * 172.74336 * 16 15 13 18 18 N 1.47081 * 108.51980 * 53.83450 * 17 16 15 19 19 C 1.36933 * 120.88085 * 128.83560 * 18 17 16 20 20 H 1.08006 * 119.99979 * 206.56391 * 19 18 17 21 21 C 1.38813 * 120.00496 * 26.56092 * 19 18 17 22 22 N 1.31621 * 119.99836 * 17.01903 * 21 19 18 23 23 Si 1.86796 * 120.00424 * 197.01950 * 21 19 18 24 24 H 1.48495 * 109.47449 * 89.99680 * 23 21 19 25 25 H 1.48493 * 109.47204 * 209.99954 * 23 21 19 26 26 H 1.48502 * 109.47051 * 329.99834 * 23 21 19 27 27 C 1.47081 * 118.23418 * 308.80869 * 18 17 16 28 28 C 1.46896 * 111.00059 * 67.78696 * 15 13 12 29 29 C 1.47422 * 125.64823 * 179.97438 * 10 8 7 30 30 H 1.09001 * 109.46921 * 90.02541 * 1 2 3 31 31 H 1.08998 * 109.46885 * 210.02475 * 1 2 3 32 32 H 1.08998 * 109.47180 * 330.02452 * 1 2 3 33 33 H 1.08005 * 125.98835 * 180.02562 * 4 3 2 34 34 H 1.08002 * 126.59173 * 179.97438 * 5 4 3 35 35 H 1.09003 * 109.46654 * 204.99138 * 7 6 2 36 36 H 1.08998 * 109.46873 * 324.99352 * 7 6 2 37 37 H 1.08998 * 109.88121 * 298.39667 * 11 10 8 38 38 H 1.08998 * 109.87663 * 59.56244 * 11 10 8 39 39 H 1.08995 * 110.84944 * 219.67509 * 12 11 10 40 40 H 1.08996 * 110.66348 * 96.52332 * 12 11 10 41 41 H 1.08991 * 109.49640 * 292.70699 * 16 15 13 42 42 H 1.09000 * 109.49212 * 52.78668 * 16 15 13 43 43 H 1.09001 * 109.63348 * 294.12027 * 17 16 15 44 44 H 1.09000 * 109.62604 * 173.53767 * 17 16 15 45 45 H 0.96997 * 120.00459 * 180.02562 * 22 21 19 46 46 H 1.08996 * 109.62773 * 291.47655 * 27 18 17 47 47 H 1.08998 * 109.78289 * 170.98838 * 27 18 17 48 48 H 1.08992 * 109.49151 * 307.20763 * 28 15 13 49 49 H 1.08994 * 109.49214 * 67.29345 * 28 15 13 50 50 H 1.09006 * 110.36990 * 322.92923 * 29 10 8 51 51 H 1.09000 * 110.36672 * 85.25099 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2675 1.0605 0.0000 4 6 3.5543 0.6819 0.0006 5 6 3.5926 -0.6642 0.0015 6 7 2.2941 -1.0973 0.0060 7 6 1.8425 -2.4910 0.0131 8 6 1.5704 -2.9380 -1.4001 9 8 1.7368 -2.1681 -2.3225 10 7 1.1421 -4.1934 -1.6392 11 6 0.9059 -5.2267 -0.6203 12 6 0.3978 -6.4858 -1.3541 13 6 -0.1550 -5.9146 -2.6866 14 1 -1.1687 -5.5352 -2.5584 15 7 -0.1042 -6.9229 -3.7538 16 6 -0.3521 -6.3125 -5.0668 17 6 -0.1127 -7.3549 -6.1643 18 7 -0.9279 -8.5424 -5.8666 19 6 -1.7503 -9.0865 -6.8167 20 1 -2.6267 -9.6426 -6.5179 21 6 -1.4578 -8.9233 -8.1638 22 7 -0.2506 -8.5527 -8.5349 23 14 -2.7774 -9.2296 -9.4499 24 1 -3.5153 -7.9680 -9.7124 25 1 -2.1434 -9.7028 -10.7066 26 1 -3.7226 -10.2617 -8.9533 27 6 -0.8358 -9.1302 -4.5215 28 6 -1.0468 -8.0179 -3.4887 29 6 0.8386 -4.7596 -2.9660 30 1 -0.3633 -0.0005 -1.0277 31 1 -0.3633 -0.8898 0.5142 32 1 -0.3633 0.8902 0.5134 33 1 4.4098 1.3412 0.0011 34 1 4.4777 -1.2831 0.0018 35 1 2.6165 -3.1214 0.4508 36 1 0.9296 -2.5741 0.6027 37 1 1.8354 -5.4502 -0.0966 38 1 0.1521 -4.8833 0.0881 39 1 -0.3941 -6.9732 -0.7855 40 1 1.2180 -7.1786 -1.5423 41 1 -1.3831 -5.9624 -5.1164 42 1 0.3255 -5.4709 -5.2105 43 1 0.9418 -7.6302 -6.1841 44 1 -0.4048 -6.9431 -7.1303 45 1 -0.0463 -8.4383 -9.4762 46 1 0.1491 -9.5761 -4.3835 47 1 -1.6039 -9.8938 -4.3992 48 1 -0.8729 -8.4132 -2.4880 49 1 -2.0681 -7.6441 -3.5602 50 1 0.3750 -4.0063 -3.6030 51 1 1.7463 -5.1443 -3.4310 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052117261.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:29 Heat of formation + Delta-G solvation = 53.624158 kcal Electronic energy + Delta-G solvation = -30895.321632 eV Core-core repulsion = 26831.092921 eV Total energy + Delta-G solvation = -4064.228711 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -43.12169 -41.24572 -39.84780 -38.17000 -35.86435 -35.03821 -33.40836 -32.65741 -32.13183 -31.42503 -30.12107 -28.91217 -27.79782 -27.26411 -25.10562 -24.52502 -23.60508 -22.39036 -21.71242 -21.24975 -20.81615 -20.11677 -18.85380 -18.59130 -18.11780 -17.60796 -16.85996 -16.63574 -16.34224 -15.94987 -15.58273 -15.49292 -15.32497 -15.27019 -15.15710 -14.92437 -14.63632 -14.56676 -14.10483 -13.93294 -13.86169 -13.67512 -13.55640 -13.26039 -13.19324 -13.13278 -13.11632 -12.70899 -12.57856 -12.52455 -12.22326 -12.03975 -11.88240 -11.77172 -11.53648 -11.42890 -11.37088 -11.00242 -10.60952 -10.53548 -9.79617 -9.33500 -9.29227 -8.70445 -7.89434 -5.33965 0.91933 1.37027 1.44766 1.46399 1.55045 1.59922 2.01021 2.17238 2.48981 2.93217 3.22535 3.26260 3.57929 3.61380 3.65099 3.68439 3.72562 3.87040 4.03710 4.06684 4.20282 4.31870 4.34080 4.37524 4.42967 4.52227 4.54163 4.58507 4.64105 4.65094 4.68677 4.78694 4.83149 4.85763 4.89886 4.96122 4.99258 5.08471 5.11877 5.21597 5.27835 5.29757 5.36965 5.59925 5.65433 5.81721 6.09495 6.15826 6.24215 6.35364 6.38749 6.92488 7.11322 7.12721 7.82871 8.36226 9.17269 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021195 B = 0.002023 C = 0.001938 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1320.770944 B =13840.585651 C =14443.057864 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.201 3.799 3 N -0.536 5.536 4 C -0.057 4.057 5 C -0.049 4.049 6 N -0.446 5.446 7 C 0.095 3.905 8 C 0.507 3.493 9 O -0.581 6.581 10 N -0.609 5.609 11 C 0.096 3.904 12 C -0.115 4.115 13 C 0.071 3.929 14 H 0.054 0.946 15 N -0.527 5.527 16 C 0.051 3.949 17 C 0.187 3.813 18 N -0.615 5.615 19 C -0.260 4.260 20 H 0.070 0.930 21 C -0.055 4.055 22 N -0.937 5.937 23 Si 0.967 3.033 24 H -0.288 1.288 25 H -0.296 1.296 26 H -0.266 1.266 27 C 0.142 3.858 28 C 0.059 3.941 29 C 0.118 3.882 30 H 0.068 0.932 31 H 0.101 0.899 32 H 0.096 0.904 33 H 0.182 0.818 34 H 0.203 0.797 35 H 0.162 0.838 36 H 0.159 0.841 37 H 0.104 0.896 38 H 0.106 0.894 39 H 0.108 0.892 40 H 0.085 0.915 41 H 0.018 0.982 42 H 0.070 0.930 43 H -0.002 1.002 44 H 0.052 0.948 45 H 0.249 0.751 46 H 0.018 0.982 47 H 0.062 0.938 48 H 0.107 0.893 49 H 0.023 0.977 50 H 0.051 0.949 51 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.842 8.459 26.925 28.365 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.062 4.062 3 N -0.256 5.256 4 C -0.203 4.203 5 C -0.181 4.181 6 N -0.129 5.129 7 C -0.030 4.030 8 C 0.295 3.705 9 O -0.461 6.461 10 N -0.343 5.343 11 C -0.026 4.026 12 C -0.153 4.153 13 C -0.039 4.039 14 H 0.072 0.928 15 N -0.252 5.252 16 C -0.078 4.078 17 C 0.060 3.940 18 N -0.339 5.339 19 C -0.390 4.390 20 H 0.088 0.912 21 C -0.250 4.250 22 N -0.583 5.583 23 Si 0.796 3.204 24 H -0.215 1.215 25 H -0.223 1.223 26 H -0.190 1.190 27 C 0.017 3.983 28 C -0.070 4.070 29 C -0.005 4.005 30 H 0.087 0.913 31 H 0.119 0.881 32 H 0.115 0.885 33 H 0.199 0.801 34 H 0.220 0.780 35 H 0.179 0.821 36 H 0.176 0.824 37 H 0.122 0.878 38 H 0.124 0.876 39 H 0.126 0.874 40 H 0.103 0.897 41 H 0.036 0.964 42 H 0.088 0.912 43 H 0.016 0.984 44 H 0.071 0.929 45 H 0.058 0.942 46 H 0.036 0.964 47 H 0.081 0.919 48 H 0.125 0.875 49 H 0.041 0.959 50 H 0.069 0.931 51 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges 3.156 9.394 26.322 28.126 hybrid contribution -0.661 -0.511 -1.957 2.128 sum 2.495 8.882 24.365 26.053 Atomic orbital electron populations 1.20292 0.83396 1.05504 1.03418 1.23789 0.96849 0.81444 1.04073 1.70191 1.03590 1.29802 1.22044 1.22655 0.94750 0.94084 1.08780 1.23145 0.87640 0.96912 1.10360 1.45051 1.06677 1.06777 1.54432 1.21960 1.07162 0.80548 0.93317 1.21069 0.76834 0.80362 0.92257 1.90809 1.53703 1.53968 1.47600 1.48476 1.65189 1.11383 1.09270 1.22507 1.03464 0.86131 0.90456 1.22715 1.02405 0.97130 0.93030 1.22766 0.96934 0.91187 0.92985 0.92762 1.61954 1.52060 1.10223 1.00969 1.22547 0.97894 0.97075 0.90299 1.20574 0.92192 0.86055 0.95133 1.44411 1.49961 1.29714 1.09808 1.19546 1.02252 1.30453 0.86794 0.91206 1.25810 0.97745 1.01891 0.99525 1.70186 1.19551 1.53241 1.15339 0.85261 0.78849 0.77879 0.78451 1.21465 1.22284 1.19028 1.21169 0.98447 0.94350 0.84360 1.22473 0.92650 0.91980 0.99891 1.22040 0.98667 0.94592 0.85241 0.91330 0.88068 0.88530 0.80054 0.78043 0.82071 0.82396 0.87827 0.87560 0.87396 0.89655 0.96419 0.91152 0.98370 0.92926 0.94171 0.96384 0.91928 0.87492 0.95854 0.93056 0.91799 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.19 71.24 0.73 -0.30 16 2 C 0.20 4.46 7.89 138.13 1.09 5.55 16 3 N -0.54 -14.61 11.25 -188.12 -2.12 -16.72 16 4 C -0.06 -1.28 11.87 83.52 0.99 -0.29 16 5 C -0.05 -0.88 11.58 83.09 0.96 0.08 16 6 N -0.45 -7.96 2.24 -518.34 -1.16 -9.12 16 7 C 0.10 0.90 5.56 85.63 0.48 1.38 16 8 C 0.51 9.80 7.92 87.66 0.69 10.50 16 9 O -0.58 -18.57 16.68 -3.05 -0.05 -18.63 16 10 N -0.61 -10.10 3.33 -811.79 -2.70 -12.80 16 11 C 0.10 0.66 6.49 86.73 0.56 1.22 16 12 C -0.11 -1.36 5.62 31.79 0.18 -1.18 16 13 C 0.07 1.51 2.72 46.30 0.13 1.64 16 14 H 0.05 1.18 8.14 -2.39 -0.02 1.16 16 15 N -0.53 -15.92 4.53 -861.95 -3.90 -19.83 16 16 C 0.05 1.95 5.43 86.38 0.47 2.42 16 17 C 0.19 9.17 5.42 86.35 0.47 9.64 16 18 N -0.61 -30.75 3.04 -698.11 -2.12 -32.87 16 19 C -0.26 -14.25 9.63 84.03 0.81 -13.44 16 20 H 0.07 3.69 7.88 -2.91 -0.02 3.66 16 21 C -0.05 -3.07 4.94 84.86 0.42 -2.65 16 22 N -0.94 -56.16 11.15 21.65 0.24 -55.92 16 23 Si 0.97 45.06 29.59 68.60 2.03 47.09 16 24 H -0.29 -13.28 7.11 99.48 0.71 -12.57 16 25 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 26 H -0.27 -11.66 7.11 99.48 0.71 -10.96 16 27 C 0.14 5.57 6.69 86.35 0.58 6.15 16 28 C 0.06 1.74 5.52 86.39 0.48 2.22 16 29 C 0.12 2.83 5.03 86.85 0.44 3.27 16 30 H 0.07 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.10 0.80 7.16 -2.39 -0.02 0.78 16 32 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 33 H 0.18 3.22 8.06 -2.91 -0.02 3.19 16 34 H 0.20 2.20 8.06 -2.91 -0.02 2.18 16 35 H 0.16 0.31 8.14 -2.39 -0.02 0.29 16 36 H 0.16 0.32 7.21 -2.39 -0.02 0.31 16 37 H 0.10 0.20 8.14 -2.39 -0.02 0.18 16 38 H 0.11 0.08 8.14 -2.39 -0.02 0.07 16 39 H 0.11 0.80 7.97 -2.39 -0.02 0.78 16 40 H 0.08 1.19 8.14 -2.39 -0.02 1.17 16 41 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 42 H 0.07 2.53 6.60 -2.39 -0.02 2.51 16 43 H 0.00 -0.10 8.14 -2.39 -0.02 -0.12 16 44 H 0.05 2.94 6.12 -2.39 -0.01 2.93 16 45 H 0.25 14.51 8.31 -92.71 -0.77 13.74 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.06 2.33 7.96 -2.39 -0.02 2.31 16 48 H 0.11 2.27 7.11 -2.39 -0.02 2.25 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.05 1.49 7.77 -2.38 -0.02 1.47 16 51 H 0.06 1.77 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -84.71 403.48 0.59 -84.12 By element: Atomic # 1 Polarization: 7.57 SS G_CDS: 0.91 Total: 8.47 kcal Atomic # 6 Polarization: 16.73 SS G_CDS: 9.46 Total: 26.20 kcal Atomic # 7 Polarization: -135.50 SS G_CDS: -11.76 Total: -147.26 kcal Atomic # 8 Polarization: -18.57 SS G_CDS: -0.05 Total: -18.63 kcal Atomic # 14 Polarization: 45.06 SS G_CDS: 2.03 Total: 47.09 kcal Total: -84.71 0.59 -84.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052117261.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 137.743 kcal (2) G-P(sol) polarization free energy of solvation -84.707 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.119 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.624 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds