Wall clock time and date at job start Wed Apr 1 2020 05:21:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30504 * 125.64636 * 2 1 4 4 C 1.34125 * 109.25247 * 180.02562 * 3 2 1 5 5 C 1.34667 * 108.02416 * 359.73428 * 4 3 2 6 6 N 1.35042 * 125.65233 * 180.02562 * 2 1 3 7 7 C 1.46501 * 126.39877 * 359.95686 * 6 2 1 8 8 C 1.50702 * 109.47039 * 85.00277 * 7 6 2 9 9 O 1.21280 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99698 * 179.97438 * 8 7 6 11 11 C 1.47017 * 125.65101 * 359.69120 * 10 8 7 12 12 C 1.54316 * 107.27736 * 180.96705 * 11 10 8 13 13 C 1.55157 * 102.86101 * 22.52896 * 12 11 10 14 14 H 1.08996 * 111.00545 * 82.37827 * 13 12 11 15 15 N 1.46904 * 111.03764 * 206.21090 * 13 12 11 16 16 C 1.46900 * 111.00084 * 296.24414 * 15 13 12 17 17 C 1.53239 * 109.33572 * 172.74565 * 16 15 13 18 18 N 1.47074 * 108.52347 * 53.82993 * 17 16 15 19 19 C 1.36943 * 120.88201 * 128.79522 * 18 17 16 20 20 H 1.08003 * 119.99504 * 208.79893 * 19 18 17 21 21 C 1.38810 * 120.00072 * 28.79420 * 19 18 17 22 22 N 1.31620 * 120.00169 * 14.68676 * 21 19 18 23 23 Si 1.86801 * 119.99828 * 194.69718 * 21 19 18 24 24 H 1.48498 * 109.47371 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47233 * 119.99708 * 23 21 19 26 26 H 1.48504 * 109.46733 * 239.99862 * 23 21 19 27 27 C 1.47084 * 118.23949 * 308.80884 * 18 17 16 28 28 C 1.46902 * 111.00062 * 171.93655 * 15 13 12 29 29 C 1.47432 * 125.64397 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.46898 * 269.95296 * 1 2 3 31 31 H 1.08998 * 109.47669 * 29.95437 * 1 2 3 32 32 H 1.09001 * 109.47103 * 149.95686 * 1 2 3 33 33 H 1.08004 * 125.98206 * 179.97438 * 4 3 2 34 34 H 1.07996 * 126.59249 * 180.27939 * 5 4 3 35 35 H 1.09001 * 109.47072 * 205.00777 * 7 6 2 36 36 H 1.08995 * 109.46861 * 325.00455 * 7 6 2 37 37 H 1.09000 * 109.88638 * 300.51649 * 11 10 8 38 38 H 1.09010 * 109.88201 * 61.68227 * 11 10 8 39 39 H 1.09002 * 110.92791 * 264.11425 * 12 11 10 40 40 H 1.09001 * 110.74388 * 140.85559 * 12 11 10 41 41 H 1.08992 * 109.49057 * 292.70108 * 16 15 13 42 42 H 1.08997 * 109.49227 * 52.78770 * 16 15 13 43 43 H 1.09006 * 109.63260 * 294.11450 * 17 16 15 44 44 H 1.09002 * 109.62569 * 173.54352 * 17 16 15 45 45 H 0.97002 * 120.00078 * 179.97438 * 22 21 19 46 46 H 1.08993 * 109.62810 * 291.48408 * 27 18 17 47 47 H 1.08996 * 109.62559 * 170.89189 * 27 18 17 48 48 H 1.08999 * 109.49409 * 307.22114 * 28 15 13 49 49 H 1.08999 * 109.48587 * 67.27336 * 28 15 13 50 50 H 1.08999 * 110.36816 * 274.67016 * 29 10 8 51 51 H 1.08996 * 110.36915 * 37.00122 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0006 5 6 3.5926 -0.6641 0.0050 6 7 2.2941 -1.0973 -0.0005 7 6 1.8427 -2.4910 -0.0002 8 6 1.5693 -2.9307 -1.4155 9 8 1.7356 -2.1563 -2.3339 10 7 1.1409 -4.1848 -1.6606 11 6 0.9056 -5.2234 -0.6470 12 6 0.4486 -6.4954 -1.3916 13 6 1.0036 -6.2754 -2.8237 14 1 2.0532 -6.5629 -2.8844 15 7 0.2030 -7.0035 -3.8172 16 6 0.2858 -8.4539 -3.5994 17 6 -0.6989 -9.1644 -4.5341 18 7 -0.4334 -8.7263 -5.9128 19 6 -0.2548 -9.6388 -6.9182 20 1 0.3669 -9.3929 -7.7664 21 6 -0.8725 -10.8798 -6.8470 22 7 -1.8453 -11.0822 -5.9837 23 14 -0.3231 -12.2628 -7.9761 24 1 0.7793 -11.7822 -8.8473 25 1 0.1537 -13.4082 -7.1602 26 1 -1.4660 -12.6972 -8.8190 27 6 -0.3645 -7.2822 -6.1831 28 6 0.6070 -6.6458 -5.1835 29 6 0.8371 -4.7445 -2.9903 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5131 32 1 -0.3633 -0.8896 -0.5145 33 1 4.4097 1.3413 -0.0011 34 1 4.4777 -1.2830 0.0103 35 1 2.6170 -3.1237 0.4337 36 1 0.9302 -2.5772 0.5897 37 1 1.8270 -5.4228 -0.0997 38 1 0.1256 -4.8991 0.0420 39 1 -0.6388 -6.5684 -1.4064 40 1 0.8873 -7.3855 -0.9405 41 1 1.2989 -8.7961 -3.8104 42 1 0.0329 -8.6813 -2.5638 43 1 -1.7203 -8.9031 -4.2571 44 1 -0.5611 -10.2431 -4.4596 45 1 -2.2773 -11.9493 -5.9343 46 1 -1.3536 -6.8399 -6.0645 47 1 -0.0055 -7.1166 -7.1988 48 1 0.5872 -5.5619 -5.2966 49 1 1.6159 -7.0128 -5.3722 50 1 -0.1860 -4.5036 -3.2786 51 1 1.5405 -4.3649 -3.7314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052117262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:35 Heat of formation + Delta-G solvation = 76.570746 kcal Electronic energy + Delta-G solvation = -30822.704212 eV Core-core repulsion = 26759.470540 eV Total energy + Delta-G solvation = -4063.233672 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.40413 -40.39813 -38.65485 -36.96597 -34.41487 -34.18677 -31.98889 -31.85894 -30.53470 -30.34599 -29.13884 -27.90374 -26.97141 -25.87010 -23.94111 -22.92488 -22.33081 -21.65686 -20.74220 -20.37078 -19.42365 -19.22836 -17.88076 -17.44558 -17.13744 -16.41153 -15.96754 -15.46528 -15.06029 -14.82274 -14.51758 -14.34667 -14.20063 -14.13984 -13.91389 -13.56133 -13.45264 -13.35041 -13.23489 -13.13003 -12.97145 -12.81400 -12.62272 -12.53336 -12.49587 -11.98392 -11.40898 -11.33142 -11.11207 -11.03735 -10.81275 -10.64598 -10.48783 -10.35855 -10.20371 -10.11477 -9.82088 -9.76345 -9.64844 -9.02809 -8.57276 -8.55426 -8.00696 -6.69542 -5.83642 -3.27368 1.65345 2.10373 2.24037 2.71565 2.96138 3.32772 3.40994 3.42964 3.87267 4.08085 4.13129 4.23946 4.38013 4.43909 4.44986 4.45506 4.51481 4.75413 5.01170 5.03726 5.13333 5.18200 5.21855 5.22904 5.34764 5.37273 5.48823 5.56302 5.61817 5.66975 5.71732 5.76100 5.81136 5.85689 5.99415 6.04615 6.06471 6.14587 6.24637 6.45473 6.52285 6.60976 6.85023 6.86674 7.06069 7.15633 7.45173 7.54047 7.61356 7.67083 7.75946 7.88372 8.39407 9.16470 9.78645 10.37796 11.25247 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031693 B = 0.001877 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.257735 B =14915.134906 C =15131.765287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.069 4.069 2 C 0.220 3.780 3 N -0.492 5.492 4 C -0.025 4.025 5 C -0.053 4.053 6 N -0.444 5.444 7 C 0.091 3.909 8 C 0.509 3.491 9 O -0.519 6.519 10 N -0.613 5.613 11 C 0.097 3.903 12 C -0.123 4.123 13 C 0.069 3.931 14 H 0.051 0.949 15 N -0.520 5.520 16 C 0.036 3.964 17 C 0.179 3.821 18 N -0.595 5.595 19 C -0.252 4.252 20 H 0.065 0.935 21 C 0.002 3.998 22 N -0.904 5.904 23 Si 0.903 3.097 24 H -0.278 1.278 25 H -0.289 1.289 26 H -0.290 1.290 27 C 0.149 3.851 28 C 0.041 3.959 29 C 0.117 3.883 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.070 0.930 33 H 0.170 0.830 34 H 0.173 0.827 35 H 0.122 0.878 36 H 0.122 0.878 37 H 0.070 0.930 38 H 0.074 0.926 39 H 0.093 0.907 40 H 0.083 0.917 41 H 0.025 0.975 42 H 0.063 0.937 43 H 0.027 0.973 44 H 0.087 0.913 45 H 0.253 0.747 46 H 0.026 0.974 47 H 0.056 0.944 48 H 0.063 0.937 49 H 0.029 0.971 50 H 0.084 0.916 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.079 14.482 17.874 24.069 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.042 4.042 3 N -0.211 5.211 4 C -0.172 4.172 5 C -0.184 4.184 6 N -0.127 5.127 7 C -0.036 4.036 8 C 0.295 3.705 9 O -0.394 6.394 10 N -0.349 5.349 11 C -0.026 4.026 12 C -0.161 4.161 13 C -0.041 4.041 14 H 0.068 0.932 15 N -0.246 5.246 16 C -0.093 4.093 17 C 0.053 3.947 18 N -0.319 5.319 19 C -0.382 4.382 20 H 0.083 0.917 21 C -0.196 4.196 22 N -0.548 5.548 23 Si 0.733 3.267 24 H -0.203 1.203 25 H -0.216 1.216 26 H -0.216 1.216 27 C 0.022 3.978 28 C -0.088 4.088 29 C -0.006 4.006 30 H 0.099 0.901 31 H 0.111 0.889 32 H 0.089 0.911 33 H 0.187 0.813 34 H 0.190 0.810 35 H 0.140 0.860 36 H 0.139 0.861 37 H 0.088 0.912 38 H 0.092 0.908 39 H 0.111 0.889 40 H 0.101 0.899 41 H 0.044 0.956 42 H 0.081 0.919 43 H 0.045 0.955 44 H 0.105 0.895 45 H 0.064 0.936 46 H 0.044 0.956 47 H 0.075 0.925 48 H 0.081 0.919 49 H 0.047 0.953 50 H 0.102 0.898 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 6.301 15.637 17.443 24.258 hybrid contribution 1.569 -2.076 -0.654 2.683 sum 7.870 13.561 16.789 22.972 Atomic orbital electron populations 1.20191 0.85075 1.04324 1.03195 1.23270 0.95650 0.81097 1.04224 1.70254 1.02333 1.28006 1.20522 1.22237 0.94786 0.92670 1.07549 1.22634 0.86624 0.97006 1.12162 1.44855 1.06877 1.05792 1.55215 1.21622 1.04158 0.81896 0.95933 1.20309 0.78013 0.81017 0.91137 1.90817 1.51170 1.51744 1.45671 1.48431 1.65900 1.10911 1.09662 1.22185 1.00793 0.88205 0.91414 1.22692 1.03157 0.95959 0.94284 1.22742 0.95848 0.92605 0.92931 0.93154 1.62034 1.52701 1.07660 1.02167 1.22928 1.00091 0.85944 1.00307 1.20845 0.93721 0.98312 0.81790 1.44105 1.83725 0.99526 1.04505 1.19223 1.22967 0.94650 1.01337 0.91697 1.25090 0.96025 0.99630 0.98878 1.70012 1.23345 1.22851 1.38605 0.86215 0.78047 0.82295 0.80172 1.20296 1.21580 1.21640 1.20978 0.95716 0.85971 0.95112 1.22686 0.98319 0.98927 0.88888 1.22291 1.02139 0.92431 0.83697 0.90117 0.88943 0.91116 0.81280 0.81016 0.85999 0.86060 0.91211 0.90818 0.88867 0.89874 0.95635 0.91896 0.95458 0.89454 0.93641 0.95560 0.92529 0.91881 0.95285 0.89825 0.90554 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.04 36.01 0.36 -0.20 16 2 C 0.22 2.50 7.89 -155.41 -1.23 1.28 16 3 N -0.49 -6.53 11.25 -10.81 -0.12 -6.66 16 4 C -0.03 -0.28 11.87 -17.81 -0.21 -0.49 16 5 C -0.05 -0.51 11.58 -16.56 -0.19 -0.71 16 6 N -0.44 -4.40 2.24 -115.19 -0.26 -4.66 16 7 C 0.09 0.62 5.35 -5.19 -0.03 0.59 16 8 C 0.51 5.40 7.92 -10.99 -0.09 5.31 16 9 O -0.52 -8.04 16.68 5.56 0.09 -7.95 16 10 N -0.61 -5.90 3.33 -170.53 -0.57 -6.46 16 11 C 0.10 0.63 6.48 -3.07 -0.02 0.61 16 12 C -0.12 -1.09 5.44 -24.90 -0.14 -1.22 16 13 C 0.07 0.83 2.71 -65.57 -0.18 0.65 16 14 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 15 N -0.52 -8.20 4.53 -223.79 -1.01 -9.21 16 16 C 0.04 0.64 5.49 -3.70 -0.02 0.62 16 17 C 0.18 4.09 5.39 -3.61 -0.02 4.07 16 18 N -0.60 -14.58 3.03 -172.01 -0.52 -15.10 16 19 C -0.25 -6.79 9.62 -15.06 -0.14 -6.94 16 20 H 0.07 1.73 7.87 -52.48 -0.41 1.32 16 21 C 0.00 0.06 4.98 -17.43 -0.09 -0.02 16 22 N -0.90 -25.61 11.17 55.49 0.62 -24.99 16 23 Si 0.90 21.29 29.58 -169.99 -5.03 16.26 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 26 H -0.29 -6.91 7.11 56.52 0.40 -6.50 16 27 C 0.15 3.07 6.69 -3.60 -0.02 3.04 16 28 C 0.04 0.70 5.46 -3.70 -0.02 0.68 16 29 C 0.12 1.38 5.23 -2.54 -0.01 1.37 16 30 H 0.08 0.47 8.14 -51.93 -0.42 0.04 16 31 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 32 H 0.07 0.54 7.83 -51.93 -0.41 0.13 16 33 H 0.17 1.43 8.06 -52.48 -0.42 1.01 16 34 H 0.17 1.15 8.06 -52.49 -0.42 0.72 16 35 H 0.12 0.49 8.13 -51.93 -0.42 0.07 16 36 H 0.12 0.50 7.92 -51.93 -0.41 0.09 16 37 H 0.07 0.32 8.14 -51.93 -0.42 -0.10 16 38 H 0.07 0.33 8.14 -51.92 -0.42 -0.09 16 39 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.08 0.66 7.94 -51.93 -0.41 0.25 16 41 H 0.03 0.47 8.14 -51.93 -0.42 0.05 16 42 H 0.06 0.95 6.93 -51.93 -0.36 0.59 16 43 H 0.03 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.09 2.22 6.22 -51.93 -0.32 1.90 16 45 H 0.25 6.93 8.31 -40.82 -0.34 6.59 16 46 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.06 1.14 7.95 -51.93 -0.41 0.72 16 48 H 0.06 0.94 6.73 -51.93 -0.35 0.59 16 49 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 50 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 51 H 0.08 1.01 7.74 -51.93 -0.40 0.61 16 LS Contribution 404.51 15.07 6.10 6.10 Total: -1.00 -35.02 404.51 -11.29 -46.31 By element: Atomic # 1 Polarization: 6.26 SS G_CDS: -8.54 Total: -2.28 kcal Atomic # 6 Polarization: 10.68 SS G_CDS: -2.04 Total: 8.63 kcal Atomic # 7 Polarization: -65.21 SS G_CDS: -1.86 Total: -67.08 kcal Atomic # 8 Polarization: -8.04 SS G_CDS: 0.09 Total: -7.95 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -35.02 -11.29 -46.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052117262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.884 kcal (2) G-P(sol) polarization free energy of solvation -35.023 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.290 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.313 kcal (6) G-S(sol) free energy of system = (1) + (5) 76.571 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds