Wall clock time and date at job start Wed Apr 1 2020 05:21:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.30504 * 125.64636 * 2 1 4 4 C 1.34125 * 109.25247 * 180.02562 * 3 2 1 5 5 C 1.34667 * 108.02416 * 359.73428 * 4 3 2 6 6 N 1.35042 * 125.65233 * 180.02562 * 2 1 3 7 7 C 1.46501 * 126.39877 * 359.95686 * 6 2 1 8 8 C 1.50702 * 109.47039 * 85.00277 * 7 6 2 9 9 O 1.21280 * 119.99792 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99698 * 179.97438 * 8 7 6 11 11 C 1.47017 * 125.65101 * 359.69120 * 10 8 7 12 12 C 1.54316 * 107.27736 * 180.96705 * 11 10 8 13 13 C 1.55157 * 102.86101 * 22.52896 * 12 11 10 14 14 H 1.08996 * 111.00545 * 82.37827 * 13 12 11 15 15 N 1.46904 * 111.03764 * 206.21090 * 13 12 11 16 16 C 1.46900 * 111.00084 * 296.24414 * 15 13 12 17 17 C 1.53239 * 109.33572 * 172.74565 * 16 15 13 18 18 N 1.47074 * 108.52347 * 53.82993 * 17 16 15 19 19 C 1.36943 * 120.88201 * 128.79522 * 18 17 16 20 20 H 1.08003 * 119.99504 * 208.79893 * 19 18 17 21 21 C 1.38810 * 120.00072 * 28.79420 * 19 18 17 22 22 N 1.31620 * 120.00169 * 14.68676 * 21 19 18 23 23 Si 1.86801 * 119.99828 * 194.69718 * 21 19 18 24 24 H 1.48498 * 109.47371 * 359.97438 * 23 21 19 25 25 H 1.48499 * 109.47233 * 119.99708 * 23 21 19 26 26 H 1.48504 * 109.46733 * 239.99862 * 23 21 19 27 27 C 1.47084 * 118.23949 * 308.80884 * 18 17 16 28 28 C 1.46902 * 111.00062 * 171.93655 * 15 13 12 29 29 C 1.47432 * 125.64397 * 180.02562 * 10 8 7 30 30 H 1.09003 * 109.46898 * 269.95296 * 1 2 3 31 31 H 1.08998 * 109.47669 * 29.95437 * 1 2 3 32 32 H 1.09001 * 109.47103 * 149.95686 * 1 2 3 33 33 H 1.08004 * 125.98206 * 179.97438 * 4 3 2 34 34 H 1.07996 * 126.59249 * 180.27939 * 5 4 3 35 35 H 1.09001 * 109.47072 * 205.00777 * 7 6 2 36 36 H 1.08995 * 109.46861 * 325.00455 * 7 6 2 37 37 H 1.09000 * 109.88638 * 300.51649 * 11 10 8 38 38 H 1.09010 * 109.88201 * 61.68227 * 11 10 8 39 39 H 1.09002 * 110.92791 * 264.11425 * 12 11 10 40 40 H 1.09001 * 110.74388 * 140.85559 * 12 11 10 41 41 H 1.08992 * 109.49057 * 292.70108 * 16 15 13 42 42 H 1.08997 * 109.49227 * 52.78770 * 16 15 13 43 43 H 1.09006 * 109.63260 * 294.11450 * 17 16 15 44 44 H 1.09002 * 109.62569 * 173.54352 * 17 16 15 45 45 H 0.97002 * 120.00078 * 179.97438 * 22 21 19 46 46 H 1.08993 * 109.62810 * 291.48408 * 27 18 17 47 47 H 1.08996 * 109.62559 * 170.89189 * 27 18 17 48 48 H 1.08999 * 109.49409 * 307.22114 * 28 15 13 49 49 H 1.08999 * 109.48587 * 67.27336 * 28 15 13 50 50 H 1.08999 * 110.36816 * 274.67016 * 29 10 8 51 51 H 1.08996 * 110.36915 * 37.00122 * 29 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2676 1.0605 0.0000 4 6 3.5543 0.6820 -0.0006 5 6 3.5926 -0.6641 0.0050 6 7 2.2941 -1.0973 -0.0005 7 6 1.8427 -2.4910 -0.0002 8 6 1.5693 -2.9307 -1.4155 9 8 1.7356 -2.1563 -2.3339 10 7 1.1409 -4.1848 -1.6606 11 6 0.9056 -5.2234 -0.6470 12 6 0.4486 -6.4954 -1.3916 13 6 1.0036 -6.2754 -2.8237 14 1 2.0532 -6.5629 -2.8844 15 7 0.2030 -7.0035 -3.8172 16 6 0.2858 -8.4539 -3.5994 17 6 -0.6989 -9.1644 -4.5341 18 7 -0.4334 -8.7263 -5.9128 19 6 -0.2548 -9.6388 -6.9182 20 1 0.3669 -9.3929 -7.7664 21 6 -0.8725 -10.8798 -6.8470 22 7 -1.8453 -11.0822 -5.9837 23 14 -0.3231 -12.2628 -7.9761 24 1 0.7793 -11.7822 -8.8473 25 1 0.1537 -13.4082 -7.1602 26 1 -1.4660 -12.6972 -8.8190 27 6 -0.3645 -7.2822 -6.1831 28 6 0.6070 -6.6458 -5.1835 29 6 0.8371 -4.7445 -2.9903 30 1 -0.3633 -0.0008 1.0277 31 1 -0.3634 0.8903 -0.5131 32 1 -0.3633 -0.8896 -0.5145 33 1 4.4097 1.3413 -0.0011 34 1 4.4777 -1.2830 0.0103 35 1 2.6170 -3.1237 0.4337 36 1 0.9302 -2.5772 0.5897 37 1 1.8270 -5.4228 -0.0997 38 1 0.1256 -4.8991 0.0420 39 1 -0.6388 -6.5684 -1.4064 40 1 0.8873 -7.3855 -0.9405 41 1 1.2989 -8.7961 -3.8104 42 1 0.0329 -8.6813 -2.5638 43 1 -1.7203 -8.9031 -4.2571 44 1 -0.5611 -10.2431 -4.4596 45 1 -2.2773 -11.9493 -5.9343 46 1 -1.3536 -6.8399 -6.0645 47 1 -0.0055 -7.1166 -7.1988 48 1 0.5872 -5.5619 -5.2966 49 1 1.6159 -7.0128 -5.3722 50 1 -0.1860 -4.5036 -3.2786 51 1 1.5405 -4.3649 -3.7314 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052117262.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:21:34 Heat of formation + Delta-G solvation = 53.221677 kcal Electronic energy + Delta-G solvation = -30823.716703 eV Core-core repulsion = 26759.470540 eV Total energy + Delta-G solvation = -4064.246164 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -43.11649 -41.24696 -39.84746 -38.16851 -35.85840 -35.02713 -33.44177 -32.64601 -31.84567 -31.73406 -30.06511 -28.90014 -27.79710 -27.26108 -25.13410 -24.47848 -23.61555 -22.38630 -21.69849 -21.25658 -20.82381 -20.12752 -18.86255 -18.56115 -18.12324 -17.54588 -16.88263 -16.72826 -16.29255 -15.89403 -15.59219 -15.50731 -15.27285 -15.26053 -15.16587 -14.93063 -14.69251 -14.55923 -14.04706 -13.94890 -13.86046 -13.69051 -13.46076 -13.35043 -13.23749 -13.21156 -12.99164 -12.72233 -12.58307 -12.52346 -12.17155 -12.02528 -11.89607 -11.81428 -11.53786 -11.44749 -11.35275 -10.99324 -10.61402 -10.53025 -9.79419 -9.33904 -9.28016 -8.66496 -7.89137 -5.36203 0.92659 1.36965 1.44729 1.46712 1.56962 1.59763 2.01708 2.18009 2.49042 2.93058 3.21298 3.26897 3.59104 3.61783 3.64481 3.68288 3.71452 3.88312 4.05832 4.07698 4.19519 4.30532 4.32423 4.36740 4.41954 4.53860 4.55220 4.57717 4.63468 4.67595 4.68036 4.78231 4.82797 4.86776 4.88686 4.98308 5.00406 5.01986 5.13411 5.18177 5.26932 5.28858 5.36201 5.60625 5.70169 5.82503 6.10191 6.16390 6.23054 6.37057 6.38470 6.92038 7.13382 7.13495 7.82449 8.36909 9.17472 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.031693 B = 0.001877 C = 0.001850 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.257735 B =14915.134906 C =15131.765287 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.202 3.798 3 N -0.536 5.536 4 C -0.056 4.056 5 C -0.049 4.049 6 N -0.446 5.446 7 C 0.094 3.906 8 C 0.508 3.492 9 O -0.579 6.579 10 N -0.609 5.609 11 C 0.098 3.902 12 C -0.119 4.119 13 C 0.070 3.930 14 H 0.052 0.948 15 N -0.527 5.527 16 C 0.055 3.945 17 C 0.185 3.815 18 N -0.615 5.615 19 C -0.265 4.265 20 H 0.063 0.937 21 C -0.048 4.048 22 N -0.933 5.933 23 Si 0.968 3.032 24 H -0.270 1.270 25 H -0.287 1.287 26 H -0.292 1.292 27 C 0.145 3.855 28 C 0.055 3.945 29 C 0.122 3.878 30 H 0.106 0.894 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.182 0.818 34 H 0.203 0.797 35 H 0.161 0.839 36 H 0.156 0.844 37 H 0.103 0.897 38 H 0.105 0.895 39 H 0.085 0.915 40 H 0.100 0.900 41 H 0.018 0.982 42 H 0.094 0.906 43 H 0.001 0.999 44 H 0.056 0.944 45 H 0.251 0.749 46 H 0.016 0.984 47 H 0.055 0.945 48 H 0.084 0.916 49 H 0.022 0.978 50 H 0.070 0.930 51 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.240 14.118 20.446 26.177 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C -0.061 4.061 3 N -0.256 5.256 4 C -0.202 4.202 5 C -0.181 4.181 6 N -0.130 5.130 7 C -0.031 4.031 8 C 0.296 3.704 9 O -0.458 6.458 10 N -0.343 5.343 11 C -0.024 4.024 12 C -0.157 4.157 13 C -0.040 4.040 14 H 0.069 0.931 15 N -0.252 5.252 16 C -0.074 4.074 17 C 0.059 3.941 18 N -0.339 5.339 19 C -0.395 4.395 20 H 0.081 0.919 21 C -0.244 4.244 22 N -0.579 5.579 23 Si 0.796 3.204 24 H -0.194 1.194 25 H -0.213 1.213 26 H -0.219 1.219 27 C 0.019 3.981 28 C -0.075 4.075 29 C -0.002 4.002 30 H 0.124 0.876 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.199 0.801 34 H 0.219 0.781 35 H 0.178 0.822 36 H 0.174 0.826 37 H 0.121 0.879 38 H 0.123 0.877 39 H 0.103 0.897 40 H 0.118 0.882 41 H 0.036 0.964 42 H 0.112 0.888 43 H 0.019 0.981 44 H 0.074 0.926 45 H 0.060 0.940 46 H 0.034 0.966 47 H 0.074 0.926 48 H 0.102 0.898 49 H 0.040 0.960 50 H 0.088 0.912 51 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 7.470 15.268 20.052 26.287 hybrid contribution 1.176 -1.920 -1.495 2.702 sum 8.646 13.348 18.558 24.440 Atomic orbital electron populations 1.20275 0.83387 1.04112 1.04740 1.23794 0.96836 0.81416 1.04028 1.70195 1.03580 1.29766 1.22061 1.22651 0.94748 0.94071 1.08760 1.23138 0.87611 0.96911 1.10441 1.45041 1.06686 1.06746 1.54478 1.21953 1.07067 0.80613 0.93465 1.20995 0.76756 0.80433 0.92182 1.90802 1.53814 1.53381 1.47792 1.48466 1.65135 1.11387 1.09350 1.22452 1.03501 0.85821 0.90587 1.22721 1.02699 0.98223 0.92074 1.22762 0.95456 0.92013 0.93742 0.93056 1.61933 1.54094 1.06778 1.02369 1.22573 0.97799 0.86646 1.00333 1.20641 0.93837 0.97175 0.82400 1.44393 1.83888 1.00784 1.04822 1.19510 1.22612 0.95522 1.01831 0.91949 1.25824 0.96255 1.01736 1.00588 1.70162 1.24460 1.23094 1.40187 0.85206 0.77529 0.79316 0.78363 1.19413 1.21336 1.21916 1.21091 0.96231 0.84263 0.96511 1.22443 0.96473 0.99625 0.88917 1.22031 1.00809 0.92345 0.85012 0.87595 0.89828 0.90616 0.80058 0.78052 0.82175 0.82620 0.87893 0.87689 0.89681 0.88172 0.96352 0.88825 0.98078 0.92569 0.93970 0.96565 0.92617 0.89794 0.95974 0.91186 0.92499 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.98 10.04 71.24 0.72 -0.27 16 2 C 0.20 4.36 7.89 138.13 1.09 5.45 16 3 N -0.54 -14.22 11.25 -188.13 -2.12 -16.34 16 4 C -0.06 -1.23 11.87 83.52 0.99 -0.24 16 5 C -0.05 -0.86 11.58 83.09 0.96 0.11 16 6 N -0.45 -7.72 2.24 -518.34 -1.16 -8.88 16 7 C 0.09 0.87 5.35 85.63 0.46 1.33 16 8 C 0.51 9.34 7.92 87.66 0.69 10.04 16 9 O -0.58 -17.48 16.68 -3.03 -0.05 -17.53 16 10 N -0.61 -9.67 3.33 -811.84 -2.70 -12.37 16 11 C 0.10 0.74 6.48 86.73 0.56 1.31 16 12 C -0.12 -1.63 5.44 31.78 0.17 -1.46 16 13 C 0.07 1.50 2.71 46.30 0.13 1.63 16 14 H 0.05 1.15 8.14 -2.39 -0.02 1.13 16 15 N -0.53 -15.98 4.53 -861.94 -3.90 -19.88 16 16 C 0.06 1.90 5.49 86.38 0.47 2.37 16 17 C 0.19 8.65 5.39 86.35 0.47 9.11 16 18 N -0.61 -30.84 3.03 -698.13 -2.11 -32.96 16 19 C -0.26 -14.54 9.62 84.03 0.81 -13.73 16 20 H 0.06 3.38 7.87 -2.91 -0.02 3.36 16 21 C -0.05 -2.68 4.98 84.86 0.42 -2.26 16 22 N -0.93 -54.29 11.17 21.65 0.24 -54.04 16 23 Si 0.97 44.38 29.58 68.60 2.03 46.40 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 25 H -0.29 -12.95 7.11 99.48 0.71 -12.25 16 26 H -0.29 -13.44 7.11 99.48 0.71 -12.73 16 27 C 0.14 6.08 6.69 86.35 0.58 6.66 16 28 C 0.05 1.83 5.46 86.38 0.47 2.31 16 29 C 0.12 2.68 5.23 86.85 0.45 3.14 16 30 H 0.11 0.96 8.14 -2.39 -0.02 0.94 16 31 H 0.08 1.35 8.14 -2.39 -0.02 1.33 16 32 H 0.07 1.01 7.83 -2.39 -0.02 0.99 16 33 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 34 H 0.20 2.04 8.06 -2.91 -0.02 2.01 16 35 H 0.16 0.29 8.13 -2.39 -0.02 0.27 16 36 H 0.16 0.39 7.92 -2.39 -0.02 0.37 16 37 H 0.10 0.22 8.14 -2.39 -0.02 0.20 16 38 H 0.11 0.26 8.14 -2.38 -0.02 0.24 16 39 H 0.08 1.36 8.14 -2.39 -0.02 1.34 16 40 H 0.10 1.09 7.94 -2.39 -0.02 1.07 16 41 H 0.02 0.66 8.14 -2.39 -0.02 0.64 16 42 H 0.09 2.62 6.93 -2.39 -0.02 2.61 16 43 H 0.00 0.06 8.14 -2.38 -0.02 0.04 16 44 H 0.06 2.95 6.22 -2.39 -0.01 2.94 16 45 H 0.25 14.06 8.31 -92.71 -0.77 13.29 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.06 2.29 7.95 -2.39 -0.02 2.27 16 48 H 0.08 2.46 6.73 -2.39 -0.02 2.44 16 49 H 0.02 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 51 H 0.06 1.48 7.74 -2.39 -0.02 1.46 16 Total: -1.00 -81.64 404.51 0.57 -81.06 By element: Atomic # 1 Polarization: 8.15 SS G_CDS: 0.91 Total: 9.05 kcal Atomic # 6 Polarization: 16.04 SS G_CDS: 9.45 Total: 25.49 kcal Atomic # 7 Polarization: -132.72 SS G_CDS: -11.76 Total: -144.48 kcal Atomic # 8 Polarization: -17.48 SS G_CDS: -0.05 Total: -17.53 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.40 kcal Total: -81.64 0.57 -81.06 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052117262.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 134.286 kcal (2) G-P(sol) polarization free energy of solvation -81.637 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.573 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.064 kcal (6) G-S(sol) free energy of system = (1) + (5) 53.222 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds