Wall clock time and date at job start Wed Apr 1 2020 05:18:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33474 * 125.49463 * 2 1 4 4 C 1.30323 * 109.72601 * 180.02562 * 3 2 1 5 5 N 1.34684 * 108.04236 * 359.95090 * 4 3 2 6 6 N 1.30976 * 125.49958 * 180.02562 * 2 1 3 7 7 C 1.46298 * 125.04345 * 180.11414 * 5 4 3 8 8 C 1.53307 * 108.77300 * 17.03676 * 7 5 4 9 9 H 1.09003 * 109.46739 * 69.86857 * 8 7 5 10 10 C 1.50706 * 109.46689 * 189.85613 * 8 7 5 11 11 O 1.21278 * 119.99485 * 120.00995 * 10 8 7 12 12 N 1.34776 * 120.00066 * 300.01375 * 10 8 7 13 13 C 1.46503 * 120.00026 * 180.02562 * 12 10 8 14 14 H 1.09004 * 109.20496 * 35.63427 * 13 12 10 15 15 C 1.50119 * 109.21094 * 154.99569 * 13 12 10 16 16 C 1.52529 * 105.41498 * 218.02770 * 15 13 12 17 17 C 1.46236 * 114.27470 * 270.59480 * 16 15 13 18 18 N 1.50162 * 107.53759 * 58.40650 * 17 16 15 19 19 C 1.36942 * 120.53747 * 109.56401 * 18 17 16 20 20 H 1.07998 * 120.00169 * 210.51563 * 19 18 17 21 21 C 1.38810 * 119.99930 * 30.51119 * 19 18 17 22 22 N 1.31620 * 119.99492 * 25.47980 * 21 19 18 23 23 Si 1.86797 * 120.00201 * 205.20879 * 21 19 18 24 24 H 1.48500 * 109.46942 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47509 * 119.99993 * 23 21 19 26 26 H 1.48501 * 109.46926 * 240.00211 * 23 21 19 27 27 C 1.43434 * 118.92656 * 289.84674 * 18 17 16 28 28 C 1.54404 * 116.39343 * 91.45111 * 27 18 17 29 29 C 1.53156 * 109.49118 * 309.85990 * 8 7 5 30 30 C 1.50922 * 127.90561 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46679 * 269.99523 * 1 2 3 32 32 H 1.08998 * 109.47040 * 30.00254 * 1 2 3 33 33 H 1.08997 * 109.46753 * 150.00203 * 1 2 3 34 34 H 1.09005 * 109.58920 * 257.25136 * 7 5 4 35 35 H 1.09001 * 109.58443 * 136.82067 * 7 5 4 36 36 H 0.96994 * 119.99994 * 359.97438 * 12 10 8 37 37 H 1.09003 * 110.24628 * 99.05490 * 15 13 12 38 38 H 1.09009 * 110.36977 * 337.06393 * 15 13 12 39 39 H 1.08995 * 108.52129 * 149.35538 * 16 15 13 40 40 H 1.08989 * 108.51942 * 31.83374 * 16 15 13 41 41 H 1.09001 * 109.84569 * 298.89603 * 17 16 15 42 42 H 1.09007 * 109.89939 * 177.95034 * 17 16 15 43 43 H 0.97000 * 120.00751 * 4.97579 * 22 21 19 44 44 H 1.09001 * 108.15581 * 213.03081 * 27 18 17 45 45 H 1.09005 * 108.15724 * 329.58780 * 27 18 17 46 46 H 1.09005 * 109.44369 * 198.43560 * 28 27 18 47 47 H 1.08997 * 109.23986 * 78.73678 * 28 27 18 48 48 H 1.08997 * 109.50841 * 189.10913 * 29 8 7 49 49 H 1.08996 * 109.51093 * 309.24557 * 29 8 7 50 50 H 1.08999 * 109.72005 * 76.27299 * 30 4 3 51 51 H 1.09003 * 109.75613 * 315.64830 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5362 0.7325 -0.0005 5 7 3.5897 -0.6132 0.0002 6 7 2.2677 -1.0663 -0.0005 7 6 4.8198 -1.4051 0.0023 8 6 5.9853 -0.5050 0.4287 9 1 5.8844 -0.2562 1.4852 10 6 7.2875 -1.2300 0.2057 11 8 8.1198 -0.7647 -0.5438 12 7 7.5271 -2.3953 0.8390 13 6 8.7933 -3.0998 0.6226 14 1 9.5938 -2.3698 0.5026 15 6 9.0876 -3.9641 1.8142 16 6 10.5957 -3.8692 2.0214 17 6 11.3676 -4.8716 1.2881 18 7 11.0542 -4.7057 -0.1711 19 6 11.9947 -4.2067 -1.0324 20 1 11.6869 -3.6394 -1.8983 21 6 13.3435 -4.4300 -0.7924 22 7 13.7225 -5.4777 -0.0917 23 14 14.6211 -3.2479 -1.4704 24 1 13.9415 -2.1633 -2.2235 25 1 15.3973 -2.6611 -0.3487 26 1 15.5400 -3.9799 -2.3787 27 6 9.7518 -5.0725 -0.6470 28 6 8.6873 -3.9542 -0.6644 29 6 5.9683 0.7812 -0.4025 30 6 4.7522 1.6266 -0.0013 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 5.0059 -1.7939 -0.9989 35 1 4.7207 -2.2322 0.7053 36 1 6.8616 -2.7671 1.4386 37 1 8.7986 -4.9956 1.6125 38 1 8.5617 -3.5906 2.6930 39 1 10.8067 -3.9796 3.0850 40 1 10.9267 -2.8794 1.7072 41 1 11.0825 -5.8711 1.6164 42 1 12.4332 -4.7165 1.4577 43 1 13.0668 -6.1322 0.1956 44 1 9.8560 -5.4515 -1.6637 45 1 9.3789 -5.8855 -0.0239 46 1 7.6940 -4.3996 -0.7216 47 1 8.8486 -3.3182 -1.5347 48 1 6.8816 1.3465 -0.2172 49 1 5.9037 0.5297 -1.4611 50 1 4.9047 2.0408 0.9953 51 1 4.6141 2.4357 -0.7185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052584249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:29 Heat of formation + Delta-G solvation = 66.201572 kcal Electronic energy + Delta-G solvation = -31262.981581 eV Core-core repulsion = 27199.298268 eV Total energy + Delta-G solvation = -4063.683313 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -42.67988 -40.31173 -38.31894 -36.83083 -35.04075 -33.60154 -32.85981 -32.27396 -31.74098 -30.40893 -29.57842 -28.61669 -26.19158 -24.82216 -24.33189 -23.72135 -22.85132 -21.16312 -20.75678 -20.25380 -19.58883 -19.36511 -17.47902 -17.27193 -16.96415 -16.43597 -16.13154 -15.57662 -15.01480 -14.76344 -14.65514 -14.60230 -14.34195 -14.02960 -13.68800 -13.62949 -13.53551 -13.32099 -12.93946 -12.89716 -12.67290 -12.59567 -12.26547 -12.20510 -12.01680 -11.77078 -11.62465 -11.38415 -11.31281 -10.87665 -10.70863 -10.58791 -10.33334 -10.24480 -10.18374 -10.02887 -10.01674 -9.88420 -9.80116 -9.59214 -9.25420 -8.92177 -8.35457 -6.86819 -6.08899 -3.27008 1.28806 1.82846 2.50026 2.56279 3.03727 3.52697 3.53767 3.56218 3.69357 3.80104 4.08143 4.16622 4.35315 4.48100 4.58843 4.68733 4.77836 4.83904 4.94242 5.00131 5.08293 5.16768 5.21100 5.27155 5.34016 5.42871 5.46236 5.48354 5.51234 5.52023 5.71613 5.74334 5.88433 5.98903 6.03360 6.07525 6.15137 6.20505 6.33185 6.38291 6.43804 6.55438 6.67377 6.74480 6.76095 6.84707 7.08448 7.17074 7.45541 7.82604 8.08631 8.13780 8.56281 9.12828 9.82327 10.28976 11.19576 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.002233 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.054551 B =12533.842107 C =13124.251727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 C 0.216 3.784 3 N -0.539 5.539 4 C 0.281 3.719 5 N -0.375 5.375 6 N -0.315 5.315 7 C 0.140 3.860 8 C -0.125 4.125 9 H 0.110 0.890 10 C 0.519 3.481 11 O -0.519 6.519 12 N -0.726 5.726 13 C 0.155 3.845 14 H 0.095 0.905 15 C -0.120 4.120 16 C -0.128 4.128 17 C 0.129 3.871 18 N -0.591 5.591 19 C -0.345 4.345 20 H 0.054 0.946 21 C -0.023 4.023 22 N -0.914 5.914 23 Si 1.064 2.936 24 H -0.291 1.291 25 H -0.290 1.290 26 H -0.294 1.294 27 C 0.162 3.838 28 C -0.150 4.150 29 C -0.109 4.109 30 C -0.042 4.042 31 H 0.082 0.918 32 H 0.085 0.915 33 H 0.081 0.919 34 H 0.096 0.904 35 H 0.101 0.899 36 H 0.393 0.607 37 H 0.072 0.928 38 H 0.059 0.941 39 H 0.045 0.955 40 H 0.062 0.938 41 H 0.025 0.975 42 H 0.091 0.909 43 H 0.269 0.731 44 H 0.040 0.960 45 H 0.025 0.975 46 H 0.051 0.949 47 H 0.058 0.942 48 H 0.102 0.898 49 H 0.081 0.919 50 H 0.102 0.898 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.142 10.057 5.124 24.853 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.116 4.116 2 C -0.066 4.066 3 N -0.267 5.267 4 C 0.005 3.995 5 N -0.166 5.166 6 N -0.143 5.143 7 C 0.017 3.983 8 C -0.148 4.148 9 H 0.128 0.872 10 C 0.302 3.698 11 O -0.394 6.394 12 N -0.376 5.376 13 C 0.052 3.948 14 H 0.113 0.887 15 C -0.158 4.158 16 C -0.168 4.168 17 C 0.005 3.995 18 N -0.314 5.314 19 C -0.474 4.474 20 H 0.072 0.928 21 C -0.225 4.225 22 N -0.554 5.554 23 Si 0.894 3.106 24 H -0.217 1.217 25 H -0.217 1.217 26 H -0.221 1.221 27 C 0.033 3.967 28 C -0.192 4.192 29 C -0.147 4.147 30 C -0.081 4.081 31 H 0.101 0.899 32 H 0.104 0.896 33 H 0.100 0.900 34 H 0.114 0.886 35 H 0.119 0.881 36 H 0.227 0.773 37 H 0.090 0.910 38 H 0.078 0.922 39 H 0.063 0.937 40 H 0.081 0.919 41 H 0.044 0.956 42 H 0.109 0.891 43 H 0.080 0.920 44 H 0.058 0.942 45 H 0.043 0.957 46 H 0.069 0.931 47 H 0.077 0.923 48 H 0.120 0.880 49 H 0.100 0.900 50 H 0.120 0.880 51 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -20.182 10.246 4.504 23.077 hybrid contribution -1.873 -0.575 0.314 1.984 sum -22.054 9.672 4.818 24.559 Atomic orbital electron populations 1.20080 0.83821 1.04018 1.03675 1.24449 0.98281 0.85524 0.98353 1.70192 0.99849 1.30814 1.25894 1.24371 0.95060 0.83967 0.96151 1.50122 1.05556 1.05882 1.55047 1.77951 0.86456 1.22517 1.27419 1.21736 0.78428 0.93546 1.04557 1.21784 0.92621 0.96883 1.03511 0.87225 1.19940 0.87683 0.81365 0.80838 1.90789 1.46742 1.66068 1.35777 1.46567 1.21020 1.22828 1.47224 1.21274 0.84207 0.94166 0.95164 0.88683 1.21323 0.97980 1.00264 0.96214 1.20878 0.93883 1.02660 0.99340 1.20467 1.00803 0.94552 0.83653 1.44026 1.08852 1.75526 1.02962 1.19934 0.88495 1.30855 1.08116 0.92789 1.25785 0.96955 0.99246 1.00474 1.70733 1.37138 1.08480 1.39026 0.83542 0.75545 0.75497 0.75970 1.21738 1.21690 1.22134 1.20137 0.86220 0.92459 0.97920 1.23218 0.99428 0.99556 0.96996 1.21596 0.98630 0.93969 1.00537 1.20472 0.86610 0.96055 1.05000 0.89894 0.89575 0.90030 0.88630 0.88098 0.77321 0.90971 0.92196 0.93667 0.91903 0.95635 0.89098 0.91992 0.94193 0.95710 0.93070 0.92342 0.87979 0.90029 0.87972 0.87294 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.41 10.51 36.01 0.38 -0.03 16 2 C 0.22 2.48 8.15 -156.42 -1.27 1.20 16 3 N -0.54 -6.53 11.18 -8.03 -0.09 -6.62 16 4 C 0.28 2.97 7.72 -155.78 -1.20 1.77 16 5 N -0.38 -4.09 4.04 -58.29 -0.24 -4.33 16 6 N -0.31 -3.93 12.74 32.51 0.41 -3.51 16 7 C 0.14 1.21 6.42 -3.99 -0.03 1.18 16 8 C -0.13 -1.04 2.54 -91.53 -0.23 -1.27 16 9 H 0.11 0.72 8.12 -51.93 -0.42 0.30 16 10 C 0.52 6.28 7.09 -10.98 -0.08 6.20 16 11 O -0.52 -8.75 15.50 5.56 0.09 -8.67 16 12 N -0.73 -8.31 4.88 -54.25 -0.26 -8.57 16 13 C 0.15 2.40 2.22 -68.39 -0.15 2.25 16 14 H 0.10 1.87 6.27 -51.93 -0.33 1.55 16 15 C -0.12 -1.72 5.34 -28.41 -0.15 -1.87 16 16 C -0.13 -2.27 5.20 -30.19 -0.16 -2.43 16 17 C 0.13 2.81 4.67 -5.21 -0.02 2.78 16 18 N -0.59 -14.06 2.40 -175.40 -0.42 -14.48 16 19 C -0.34 -9.44 9.47 -15.06 -0.14 -9.58 16 20 H 0.05 1.54 7.95 -52.49 -0.42 1.12 16 21 C -0.02 -0.63 4.77 -17.43 -0.08 -0.72 16 22 N -0.91 -26.69 12.24 55.49 0.68 -26.01 16 23 Si 1.06 25.39 29.99 -169.99 -5.10 20.29 16 24 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 25 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 26 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 27 C 0.16 3.29 5.13 -4.93 -0.03 3.26 16 28 C -0.15 -2.57 5.97 -25.03 -0.15 -2.72 16 29 C -0.11 -0.89 4.68 -26.42 -0.12 -1.01 16 30 C -0.04 -0.30 6.33 -27.54 -0.17 -0.47 16 31 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 32 H 0.09 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.10 0.87 8.12 -51.93 -0.42 0.45 16 35 H 0.10 0.72 7.88 -51.93 -0.41 0.31 16 36 H 0.39 3.21 8.13 -40.82 -0.33 2.88 16 37 H 0.07 1.04 6.28 -51.93 -0.33 0.72 16 38 H 0.06 0.70 7.86 -51.92 -0.41 0.29 16 39 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 40 H 0.06 1.23 6.93 -51.94 -0.36 0.87 16 41 H 0.03 0.53 8.13 -51.93 -0.42 0.11 16 42 H 0.09 2.28 5.78 -51.92 -0.30 1.98 16 43 H 0.27 7.87 6.97 -40.82 -0.28 7.58 16 44 H 0.04 0.86 8.00 -51.93 -0.42 0.45 16 45 H 0.02 0.46 6.89 -51.93 -0.36 0.11 16 46 H 0.05 0.75 8.13 -51.93 -0.42 0.33 16 47 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 48 H 0.10 0.85 7.80 -51.93 -0.41 0.44 16 49 H 0.08 0.75 8.12 -51.93 -0.42 0.33 16 50 H 0.10 0.56 8.14 -51.93 -0.42 0.14 16 51 H 0.11 0.66 8.14 -51.93 -0.42 0.24 16 LS Contribution 394.81 15.07 5.95 5.95 Total: -1.00 -34.51 394.81 -10.80 -45.31 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.20 Total: 2.10 kcal Atomic # 6 Polarization: 2.16 SS G_CDS: -3.62 Total: -1.46 kcal Atomic # 7 Polarization: -63.60 SS G_CDS: 0.08 Total: -63.52 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.09 Total: -8.67 kcal Atomic # 14 Polarization: 25.39 SS G_CDS: -5.10 Total: 20.29 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -34.51 -10.80 -45.31 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052584249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 111.508 kcal (2) G-P(sol) polarization free energy of solvation -34.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 77.002 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.801 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 66.202 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds