Wall clock time and date at job start Wed Apr 1 2020 05:18:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 N 1.33474 * 125.49463 * 2 1 4 4 C 1.30323 * 109.72601 * 180.02562 * 3 2 1 5 5 N 1.34684 * 108.04236 * 359.95090 * 4 3 2 6 6 N 1.30976 * 125.49958 * 180.02562 * 2 1 3 7 7 C 1.46298 * 125.04345 * 180.11414 * 5 4 3 8 8 C 1.53307 * 108.77300 * 17.03676 * 7 5 4 9 9 H 1.09003 * 109.46739 * 69.86857 * 8 7 5 10 10 C 1.50706 * 109.46689 * 189.85613 * 8 7 5 11 11 O 1.21278 * 119.99485 * 120.00995 * 10 8 7 12 12 N 1.34776 * 120.00066 * 300.01375 * 10 8 7 13 13 C 1.46503 * 120.00026 * 180.02562 * 12 10 8 14 14 H 1.09004 * 109.20496 * 35.63427 * 13 12 10 15 15 C 1.50119 * 109.21094 * 154.99569 * 13 12 10 16 16 C 1.52529 * 105.41498 * 218.02770 * 15 13 12 17 17 C 1.46236 * 114.27470 * 270.59480 * 16 15 13 18 18 N 1.50162 * 107.53759 * 58.40650 * 17 16 15 19 19 C 1.36942 * 120.53747 * 109.56401 * 18 17 16 20 20 H 1.07998 * 120.00169 * 210.51563 * 19 18 17 21 21 C 1.38810 * 119.99930 * 30.51119 * 19 18 17 22 22 N 1.31620 * 119.99492 * 25.47980 * 21 19 18 23 23 Si 1.86797 * 120.00201 * 205.20879 * 21 19 18 24 24 H 1.48500 * 109.46942 * 359.97438 * 23 21 19 25 25 H 1.48496 * 109.47509 * 119.99993 * 23 21 19 26 26 H 1.48501 * 109.46926 * 240.00211 * 23 21 19 27 27 C 1.43434 * 118.92656 * 289.84674 * 18 17 16 28 28 C 1.54404 * 116.39343 * 91.45111 * 27 18 17 29 29 C 1.53156 * 109.49118 * 309.85990 * 8 7 5 30 30 C 1.50922 * 127.90561 * 179.97438 * 4 3 2 31 31 H 1.09003 * 109.46679 * 269.99523 * 1 2 3 32 32 H 1.08998 * 109.47040 * 30.00254 * 1 2 3 33 33 H 1.08997 * 109.46753 * 150.00203 * 1 2 3 34 34 H 1.09005 * 109.58920 * 257.25136 * 7 5 4 35 35 H 1.09001 * 109.58443 * 136.82067 * 7 5 4 36 36 H 0.96994 * 119.99994 * 359.97438 * 12 10 8 37 37 H 1.09003 * 110.24628 * 99.05490 * 15 13 12 38 38 H 1.09009 * 110.36977 * 337.06393 * 15 13 12 39 39 H 1.08995 * 108.52129 * 149.35538 * 16 15 13 40 40 H 1.08989 * 108.51942 * 31.83374 * 16 15 13 41 41 H 1.09001 * 109.84569 * 298.89603 * 17 16 15 42 42 H 1.09007 * 109.89939 * 177.95034 * 17 16 15 43 43 H 0.97000 * 120.00751 * 4.97579 * 22 21 19 44 44 H 1.09001 * 108.15581 * 213.03081 * 27 18 17 45 45 H 1.09005 * 108.15724 * 329.58780 * 27 18 17 46 46 H 1.09005 * 109.44369 * 198.43560 * 28 27 18 47 47 H 1.08997 * 109.23986 * 78.73678 * 28 27 18 48 48 H 1.08997 * 109.50841 * 189.10913 * 29 8 7 49 49 H 1.08996 * 109.51093 * 309.24557 * 29 8 7 50 50 H 1.08999 * 109.72005 * 76.27299 * 30 4 3 51 51 H 1.09003 * 109.75613 * 315.64830 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2821 1.0867 0.0000 4 6 3.5362 0.7325 -0.0005 5 7 3.5897 -0.6132 0.0002 6 7 2.2677 -1.0663 -0.0005 7 6 4.8198 -1.4051 0.0023 8 6 5.9853 -0.5050 0.4287 9 1 5.8844 -0.2562 1.4852 10 6 7.2875 -1.2300 0.2057 11 8 8.1198 -0.7647 -0.5438 12 7 7.5271 -2.3953 0.8390 13 6 8.7933 -3.0998 0.6226 14 1 9.5938 -2.3698 0.5026 15 6 9.0876 -3.9641 1.8142 16 6 10.5957 -3.8692 2.0214 17 6 11.3676 -4.8716 1.2881 18 7 11.0542 -4.7057 -0.1711 19 6 11.9947 -4.2067 -1.0324 20 1 11.6869 -3.6394 -1.8983 21 6 13.3435 -4.4300 -0.7924 22 7 13.7225 -5.4777 -0.0917 23 14 14.6211 -3.2479 -1.4704 24 1 13.9415 -2.1633 -2.2235 25 1 15.3973 -2.6611 -0.3487 26 1 15.5400 -3.9799 -2.3787 27 6 9.7518 -5.0725 -0.6470 28 6 8.6873 -3.9542 -0.6644 29 6 5.9683 0.7812 -0.4025 30 6 4.7522 1.6266 -0.0013 31 1 -0.3633 -0.0001 1.0277 32 1 -0.3633 0.8899 -0.5139 33 1 -0.3633 -0.8900 -0.5138 34 1 5.0059 -1.7939 -0.9989 35 1 4.7207 -2.2322 0.7053 36 1 6.8616 -2.7671 1.4386 37 1 8.7986 -4.9956 1.6125 38 1 8.5617 -3.5906 2.6930 39 1 10.8067 -3.9796 3.0850 40 1 10.9267 -2.8794 1.7072 41 1 11.0825 -5.8711 1.6164 42 1 12.4332 -4.7165 1.4577 43 1 13.0668 -6.1322 0.1956 44 1 9.8560 -5.4515 -1.6637 45 1 9.3789 -5.8855 -0.0239 46 1 7.6940 -4.3996 -0.7216 47 1 8.8486 -3.3182 -1.5347 48 1 6.8816 1.3465 -0.2172 49 1 5.9037 0.5297 -1.4611 50 1 4.9047 2.0408 0.9953 51 1 4.6141 2.4357 -0.7185 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052584249.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:27 Heat of formation + Delta-G solvation = 44.163316 kcal Electronic energy + Delta-G solvation = -31263.937231 eV Core-core repulsion = 27199.298268 eV Total energy + Delta-G solvation = -4064.638964 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.45149 -41.37761 -39.71231 -37.72798 -36.51421 -34.50369 -34.19897 -33.42901 -33.06139 -31.73024 -30.56485 -29.35101 -27.89645 -25.85241 -25.48695 -25.16035 -24.00211 -22.13636 -21.86271 -21.37939 -20.97511 -20.39408 -19.18190 -18.35085 -17.83997 -17.30481 -17.19907 -16.67346 -16.39216 -16.09720 -15.67403 -15.50540 -15.49120 -15.35754 -15.19473 -14.90541 -14.57068 -14.21769 -14.18233 -13.91569 -13.77152 -13.53114 -13.36991 -13.32015 -13.03844 -12.85853 -12.72847 -12.63741 -12.34110 -12.26258 -12.05633 -12.00380 -11.94267 -11.87348 -11.75970 -11.45818 -11.17068 -11.12977 -10.92402 -10.81108 -10.43466 -10.34486 -10.08553 -8.86690 -8.24861 -5.41196 0.51036 1.06847 1.55317 1.56462 1.61402 1.77986 1.79220 2.07248 2.62627 2.89734 3.08881 3.15139 3.39381 3.43452 3.50110 3.69125 3.77853 3.81332 3.93813 4.02521 4.13620 4.16076 4.20882 4.32427 4.34467 4.38661 4.48810 4.55330 4.68009 4.72702 4.73994 4.74736 4.87496 4.87665 4.89261 4.92458 4.98627 5.07033 5.10643 5.15777 5.23379 5.27952 5.34437 5.41212 5.44718 5.53809 5.57830 5.72388 5.90166 6.41460 6.50742 7.03755 7.11669 7.20804 7.77804 8.24894 8.99726 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.021767 B = 0.002233 C = 0.002133 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1286.054551 B =12533.842107 C =13124.251727 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.206 3.794 3 N -0.564 5.564 4 C 0.277 3.723 5 N -0.381 5.381 6 N -0.344 5.344 7 C 0.140 3.860 8 C -0.108 4.108 9 H 0.139 0.861 10 C 0.521 3.479 11 O -0.571 6.571 12 N -0.710 5.710 13 C 0.167 3.833 14 H 0.050 0.950 15 C -0.106 4.106 16 C -0.124 4.124 17 C 0.135 3.865 18 N -0.608 5.608 19 C -0.346 4.346 20 H 0.032 0.968 21 C -0.069 4.069 22 N -0.935 5.935 23 Si 1.108 2.892 24 H -0.285 1.285 25 H -0.283 1.283 26 H -0.289 1.289 27 C 0.158 3.842 28 C -0.137 4.137 29 C -0.106 4.106 30 C -0.033 4.033 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.090 0.910 34 H 0.086 0.914 35 H 0.122 0.878 36 H 0.416 0.584 37 H 0.081 0.919 38 H 0.101 0.899 39 H 0.071 0.929 40 H 0.036 0.964 41 H 0.035 0.965 42 H 0.052 0.948 43 H 0.258 0.742 44 H 0.015 0.985 45 H 0.048 0.952 46 H 0.085 0.915 47 H 0.024 0.976 48 H 0.101 0.899 49 H 0.064 0.936 50 H 0.126 0.874 51 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.466 10.736 7.032 27.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 N -0.293 5.293 4 C 0.000 4.000 5 N -0.171 5.171 6 N -0.173 5.173 7 C 0.018 3.982 8 C -0.130 4.130 9 H 0.157 0.843 10 C 0.306 3.694 11 O -0.449 6.449 12 N -0.362 5.362 13 C 0.062 3.938 14 H 0.068 0.932 15 C -0.144 4.144 16 C -0.163 4.163 17 C 0.011 3.989 18 N -0.332 5.332 19 C -0.477 4.477 20 H 0.049 0.951 21 C -0.267 4.267 22 N -0.576 5.576 23 Si 0.934 3.066 24 H -0.211 1.211 25 H -0.209 1.209 26 H -0.216 1.216 27 C 0.030 3.970 28 C -0.179 4.179 29 C -0.145 4.145 30 C -0.072 4.072 31 H 0.116 0.884 32 H 0.113 0.887 33 H 0.108 0.892 34 H 0.105 0.895 35 H 0.140 0.860 36 H 0.253 0.747 37 H 0.099 0.901 38 H 0.119 0.881 39 H 0.090 0.910 40 H 0.055 0.945 41 H 0.053 0.947 42 H 0.071 0.929 43 H 0.068 0.932 44 H 0.033 0.967 45 H 0.067 0.933 46 H 0.103 0.897 47 H 0.043 0.957 48 H 0.119 0.881 49 H 0.083 0.917 50 H 0.144 0.856 51 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -22.568 10.904 6.442 25.879 hybrid contribution -1.207 -0.802 -0.324 1.485 sum -23.775 10.102 6.118 26.547 Atomic orbital electron populations 1.20240 0.81498 1.04866 1.04852 1.25189 0.99823 0.85169 0.97417 1.70215 1.00639 1.31440 1.27013 1.24962 0.95616 0.84295 0.95079 1.50201 1.05575 1.06204 1.55159 1.77889 0.87216 1.23437 1.28759 1.21815 0.77744 0.93897 1.04765 1.21659 0.90003 0.96144 1.05213 0.84284 1.20522 0.88296 0.81060 0.79497 1.90785 1.48803 1.67325 1.37964 1.46279 1.20099 1.22441 1.47406 1.20801 0.84819 0.93179 0.94980 0.93191 1.21257 0.95488 1.00609 0.97048 1.20736 0.95922 0.99567 1.00064 1.20410 0.99309 0.96264 0.82879 1.44201 1.09507 1.75770 1.03691 1.19979 0.89579 1.29967 1.08126 0.95051 1.26903 0.98845 1.00023 1.00890 1.70833 1.36740 1.09227 1.40838 0.82938 0.73844 0.74075 0.75762 1.21062 1.20945 1.21568 1.20271 0.85638 0.94257 0.96869 1.23019 0.99768 0.98251 0.96816 1.21545 0.99119 0.94149 0.99640 1.20579 0.84503 0.95430 1.06687 0.88447 0.88702 0.89168 0.89528 0.85992 0.74658 0.90070 0.88071 0.91022 0.94503 0.94677 0.92917 0.93193 0.96678 0.93334 0.89657 0.95708 0.88069 0.91669 0.85565 0.86185 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.70 10.51 71.24 0.75 0.05 16 2 C 0.21 4.43 8.15 138.48 1.13 5.55 16 3 N -0.56 -12.77 11.18 -179.30 -2.01 -14.78 16 4 C 0.28 5.31 7.72 138.36 1.07 6.38 16 5 N -0.38 -7.57 4.04 -338.33 -1.37 -8.93 16 6 N -0.34 -8.06 12.74 -51.07 -0.65 -8.71 16 7 C 0.14 2.07 6.42 86.52 0.56 2.62 16 8 C -0.11 -1.52 2.54 -11.38 -0.03 -1.55 16 9 H 0.14 1.23 8.12 -2.39 -0.02 1.21 16 10 C 0.52 11.78 7.09 87.66 0.62 12.40 16 11 O -0.57 -19.40 15.50 -3.02 -0.05 -19.44 16 12 N -0.71 -14.29 4.88 -443.95 -2.17 -16.46 16 13 C 0.17 4.94 2.22 44.69 0.10 5.04 16 14 H 0.05 2.00 6.27 -2.39 -0.01 1.98 16 15 C -0.11 -2.71 5.34 29.51 0.16 -2.55 16 16 C -0.12 -4.23 5.20 28.36 0.15 -4.08 16 17 C 0.13 5.89 4.67 83.58 0.39 6.28 16 18 N -0.61 -29.63 2.40 -708.85 -1.70 -31.32 16 19 C -0.35 -19.70 9.47 84.03 0.80 -18.91 16 20 H 0.03 1.89 7.95 -2.91 -0.02 1.87 16 21 C -0.07 -3.98 4.77 84.86 0.40 -3.58 16 22 N -0.93 -56.08 12.24 21.65 0.26 -55.82 16 23 Si 1.11 52.59 29.99 68.60 2.06 54.65 16 24 H -0.28 -13.06 7.11 99.48 0.71 -12.35 16 25 H -0.28 -13.04 7.11 99.48 0.71 -12.33 16 26 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 27 C 0.16 6.42 5.13 87.42 0.45 6.86 16 28 C -0.14 -4.61 5.97 31.70 0.19 -4.42 16 29 C -0.11 -1.56 4.68 30.80 0.14 -1.41 16 30 C -0.03 -0.39 6.33 30.07 0.19 -0.20 16 31 H 0.10 0.94 8.14 -2.39 -0.02 0.92 16 32 H 0.09 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.09 0.96 8.14 -2.39 -0.02 0.94 16 34 H 0.09 1.45 8.12 -2.38 -0.02 1.44 16 35 H 0.12 1.28 7.88 -2.39 -0.02 1.26 16 36 H 0.42 4.86 8.13 -92.71 -0.75 4.11 16 37 H 0.08 2.00 6.28 -2.39 -0.01 1.98 16 38 H 0.10 1.81 7.86 -2.38 -0.02 1.80 16 39 H 0.07 2.07 8.14 -2.39 -0.02 2.05 16 40 H 0.04 1.45 6.93 -2.39 -0.02 1.44 16 41 H 0.04 1.44 8.13 -2.39 -0.02 1.42 16 42 H 0.05 2.71 5.78 -2.38 -0.01 2.70 16 43 H 0.26 15.58 6.97 -92.71 -0.65 14.93 16 44 H 0.01 0.67 8.00 -2.39 -0.02 0.65 16 45 H 0.05 1.74 6.89 -2.38 -0.02 1.72 16 46 H 0.08 2.28 8.13 -2.38 -0.02 2.26 16 47 H 0.02 0.98 8.14 -2.39 -0.02 0.96 16 48 H 0.10 1.55 7.80 -2.39 -0.02 1.53 16 49 H 0.06 1.17 8.12 -2.39 -0.02 1.15 16 50 H 0.13 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.12 1.20 8.14 -2.39 -0.02 1.19 16 Total: -1.00 -80.03 394.81 1.76 -78.27 By element: Atomic # 1 Polarization: 13.74 SS G_CDS: 0.31 Total: 14.06 kcal Atomic # 6 Polarization: 1.44 SS G_CDS: 7.06 Total: 8.50 kcal Atomic # 7 Polarization: -128.41 SS G_CDS: -7.62 Total: -136.03 kcal Atomic # 8 Polarization: -19.40 SS G_CDS: -0.05 Total: -19.44 kcal Atomic # 14 Polarization: 52.59 SS G_CDS: 2.06 Total: 54.65 kcal Total: -80.03 1.76 -78.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052584249.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 122.434 kcal (2) G-P(sol) polarization free energy of solvation -80.029 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.404 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.759 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.270 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.163 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds