Wall clock time and date at job start Wed Apr 1 2020 05:18:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 N 1.33471 * 125.49374 * 2 1 4 4 C 1.30335 * 109.72546 * 179.73333 * 3 2 1 5 5 N 1.34677 * 108.03884 * 0.03159 * 4 3 2 6 6 N 1.30973 * 125.49545 * 179.69355 * 2 1 3 7 7 C 1.46297 * 125.04381 * 179.89326 * 5 4 3 8 8 C 1.53306 * 108.76884 * 342.95747 * 7 5 4 9 9 H 1.08995 * 109.46591 * 290.15501 * 8 7 5 10 10 C 1.50697 * 109.47021 * 170.15758 * 8 7 5 11 11 O 1.21289 * 120.00002 * 239.99987 * 10 8 7 12 12 N 1.34773 * 120.00144 * 59.99833 * 10 8 7 13 13 C 1.46504 * 120.00075 * 179.97438 * 12 10 8 14 14 H 1.08998 * 108.44873 * 327.30849 * 13 12 10 15 15 C 1.52573 * 108.51102 * 209.76705 * 13 12 10 16 16 C 1.50885 * 109.35592 * 153.73302 * 15 13 12 17 17 C 1.53944 * 110.09190 * 91.88486 * 16 15 13 18 18 N 1.47605 * 112.14724 * 319.43404 * 17 16 15 19 19 C 1.36938 * 118.64504 * 137.88666 * 18 17 16 20 20 H 1.07998 * 120.00166 * 206.46563 * 19 18 17 21 21 C 1.38813 * 119.99855 * 26.46440 * 19 18 17 22 22 N 1.31618 * 120.00024 * 15.67233 * 21 19 18 23 23 Si 1.86802 * 120.00197 * 195.66566 * 21 19 18 24 24 H 1.48495 * 109.46869 * 60.00375 * 23 21 19 25 25 H 1.48498 * 109.47036 * 180.02562 * 23 21 19 26 26 H 1.48503 * 109.46905 * 300.00416 * 23 21 19 27 27 C 1.44569 * 122.71184 * 317.87286 * 18 17 16 28 28 C 1.47090 * 108.51070 * 85.00360 * 13 12 10 29 29 C 1.53164 * 109.48232 * 50.15184 * 8 7 5 30 30 C 1.50922 * 127.90125 * 180.02562 * 4 3 2 31 31 H 1.09002 * 109.47109 * 90.02355 * 1 2 3 32 32 H 1.09003 * 109.47142 * 210.01653 * 1 2 3 33 33 H 1.08998 * 109.47895 * 330.02445 * 1 2 3 34 34 H 1.09006 * 109.58803 * 102.74032 * 7 5 4 35 35 H 1.08996 * 109.59139 * 223.17085 * 7 5 4 36 36 H 0.96996 * 120.00009 * 0.02562 * 12 10 8 37 37 H 1.08995 * 109.48960 * 273.69767 * 15 13 12 38 38 H 1.09002 * 109.49061 * 33.77425 * 15 13 12 39 39 H 1.09001 * 109.36729 * 331.69685 * 16 15 13 40 40 H 1.08992 * 109.26450 * 212.01293 * 16 15 13 41 41 H 1.08997 * 108.94877 * 198.74752 * 17 16 15 42 42 H 1.09006 * 108.87969 * 80.07408 * 17 16 15 43 43 H 0.96996 * 120.00302 * 179.97438 * 22 21 19 44 44 H 1.09006 * 109.45265 * 330.67989 * 27 18 17 45 45 H 1.09002 * 109.43369 * 210.74937 * 27 18 17 46 46 H 1.09004 * 109.32905 * 304.31264 * 28 13 12 47 47 H 1.08994 * 109.33080 * 63.79634 * 28 13 12 48 48 H 1.09000 * 109.50131 * 50.76070 * 29 8 7 49 49 H 1.09002 * 109.50619 * 170.84444 * 29 8 7 50 50 H 1.08996 * 109.71754 * 283.73923 * 30 4 3 51 51 H 1.08997 * 109.71712 * 44.38525 * 30 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2820 1.0867 0.0000 4 6 3.5362 0.7325 0.0057 5 7 3.5896 -0.6132 0.0088 6 7 2.2675 -1.0663 0.0057 7 6 4.8197 -1.4051 0.0132 8 6 5.9866 -0.5062 -0.4118 9 1 5.8890 -0.2600 -1.4691 10 6 7.2880 -1.2306 -0.1827 11 8 8.1179 -0.7635 0.5684 12 7 7.5297 -2.3974 -0.8123 13 6 8.7952 -3.1013 -0.5900 14 1 9.5764 -2.3607 -0.4186 15 6 9.1426 -3.8839 -1.8528 16 6 10.6379 -4.0700 -1.9303 17 6 11.0409 -5.3974 -1.2628 18 7 10.2826 -5.6489 -0.0217 19 6 9.8171 -6.9141 0.2183 20 1 8.9441 -7.0600 0.8371 21 6 10.4674 -8.0092 -0.3338 22 7 11.6831 -7.8762 -0.8203 23 14 9.6172 -9.6718 -0.3860 24 1 8.3647 -9.5625 -1.1761 25 1 10.5174 -10.6684 -1.0197 26 1 9.2939 -10.1060 0.9968 27 6 10.0113 -4.6145 0.9512 28 6 8.6630 -3.9291 0.6187 29 6 5.9667 0.7822 0.4161 30 6 4.7521 1.6266 0.0084 31 1 -0.3633 -0.0004 -1.0277 32 1 -0.3633 -0.8899 0.5141 33 1 -0.3635 0.8901 0.5134 34 1 5.0023 -1.7911 1.0161 35 1 4.7231 -2.2342 -0.6877 36 1 6.8662 -2.7707 -1.4133 37 1 8.6559 -4.8586 -1.8220 38 1 8.7989 -3.3328 -2.7282 39 1 11.1320 -3.2438 -1.4191 40 1 10.9449 -4.0834 -2.9760 41 1 12.1047 -5.3666 -1.0275 42 1 10.8568 -6.2137 -1.9615 43 1 12.1376 -8.6415 -1.2058 44 1 10.8108 -3.8740 0.9263 45 1 9.9578 -5.0572 1.9459 46 1 8.3621 -3.2995 1.4561 47 1 7.9021 -4.6916 0.4523 48 1 5.8987 0.5332 1.4751 49 1 6.8810 1.3467 0.2329 50 1 4.9079 2.0386 -0.9886 51 1 4.6111 2.4369 0.7238 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052584252.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:41 Heat of formation + Delta-G solvation = 44.264383 kcal Electronic energy + Delta-G solvation = -31167.505625 eV Core-core repulsion = 27102.871044 eV Total energy + Delta-G solvation = -4064.634581 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.43363 -41.38819 -39.45429 -37.67063 -36.39760 -34.37950 -34.07772 -33.32938 -33.05003 -31.78987 -30.55501 -29.34210 -27.85323 -25.86218 -25.42906 -25.13097 -24.02358 -21.98920 -21.58282 -21.50600 -20.98995 -20.32728 -18.60919 -18.31638 -17.83088 -17.23004 -17.19781 -16.95551 -16.38034 -15.84195 -15.58495 -15.54540 -15.30536 -15.20135 -15.15601 -14.90847 -14.41550 -14.22788 -14.13303 -13.82674 -13.59357 -13.51962 -13.36675 -13.15717 -13.01693 -12.83893 -12.69834 -12.67633 -12.44194 -12.29475 -12.08365 -12.06301 -11.96618 -11.74505 -11.51860 -11.49854 -11.34491 -11.14789 -10.86561 -10.79302 -10.43458 -10.33580 -10.09717 -8.64476 -7.84117 -5.30157 0.53278 1.09235 1.47405 1.48308 1.55149 1.60258 1.79356 2.10010 2.52469 2.92207 3.12406 3.29395 3.42874 3.47106 3.67324 3.71101 3.77861 3.82782 4.03979 4.12995 4.18710 4.21339 4.33547 4.38672 4.45890 4.46373 4.52320 4.69609 4.72648 4.76260 4.79112 4.88046 4.92789 4.95002 4.97104 5.00512 5.11437 5.14207 5.16184 5.25617 5.29499 5.34304 5.45372 5.50935 5.55099 5.60375 5.69769 5.75330 5.83760 6.42249 6.53162 7.05192 7.19617 7.20649 7.96617 8.35444 9.20782 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015967 B = 0.002334 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1753.177734 B =11995.961392 C =13190.492845 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 C 0.206 3.794 3 N -0.564 5.564 4 C 0.277 3.723 5 N -0.381 5.381 6 N -0.348 5.348 7 C 0.138 3.862 8 C -0.110 4.110 9 H 0.137 0.863 10 C 0.526 3.474 11 O -0.565 6.565 12 N -0.714 5.714 13 C 0.169 3.831 14 H 0.066 0.934 15 C -0.102 4.102 16 C -0.129 4.129 17 C 0.186 3.814 18 N -0.601 5.601 19 C -0.262 4.262 20 H 0.063 0.937 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.961 3.039 24 H -0.277 1.277 25 H -0.296 1.296 26 H -0.280 1.280 27 C 0.158 3.842 28 C -0.135 4.135 29 C -0.104 4.104 30 C -0.033 4.033 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.095 0.905 34 H 0.087 0.913 35 H 0.114 0.886 36 H 0.411 0.589 37 H 0.059 0.941 38 H 0.085 0.915 39 H 0.055 0.945 40 H 0.076 0.924 41 H -0.010 1.010 42 H 0.044 0.956 43 H 0.248 0.752 44 H 0.037 0.963 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.054 0.946 48 H 0.067 0.933 49 H 0.107 0.893 50 H 0.126 0.874 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.849 19.893 -3.244 26.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.115 4.115 2 C -0.076 4.076 3 N -0.293 5.293 4 C 0.001 3.999 5 N -0.172 5.172 6 N -0.177 5.177 7 C 0.016 3.984 8 C -0.132 4.132 9 H 0.155 0.845 10 C 0.312 3.688 11 O -0.444 6.444 12 N -0.366 5.366 13 C 0.065 3.935 14 H 0.084 0.916 15 C -0.140 4.140 16 C -0.169 4.169 17 C 0.061 3.939 18 N -0.323 5.323 19 C -0.392 4.392 20 H 0.081 0.919 21 C -0.242 4.242 22 N -0.581 5.581 23 Si 0.790 3.210 24 H -0.203 1.203 25 H -0.223 1.223 26 H -0.206 1.206 27 C 0.030 3.970 28 C -0.177 4.177 29 C -0.142 4.142 30 C -0.073 4.073 31 H 0.115 0.885 32 H 0.107 0.893 33 H 0.114 0.886 34 H 0.105 0.895 35 H 0.132 0.868 36 H 0.248 0.752 37 H 0.077 0.923 38 H 0.104 0.896 39 H 0.074 0.926 40 H 0.094 0.906 41 H 0.009 0.991 42 H 0.062 0.938 43 H 0.058 0.942 44 H 0.055 0.945 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.073 0.927 48 H 0.086 0.914 49 H 0.125 0.875 50 H 0.144 0.856 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -16.458 19.623 -2.777 25.761 hybrid contribution 0.038 -1.753 -0.029 1.753 sum -16.420 17.870 -2.806 24.430 Atomic orbital electron populations 1.20234 0.81593 1.04847 1.04808 1.25167 0.99794 0.85209 0.97428 1.70216 1.00677 1.31345 1.27094 1.25055 0.95718 0.84224 0.94943 1.50202 1.05506 1.06289 1.55183 1.77912 0.87388 1.23581 1.28782 1.21822 0.78008 0.93958 1.04657 1.21674 0.90030 0.96255 1.05228 0.84502 1.20366 0.88212 0.80751 0.79516 1.90738 1.48645 1.67294 1.37689 1.46339 1.20342 1.22402 1.47467 1.19723 0.85505 0.93315 0.94972 0.91585 1.21140 0.96477 1.00191 0.96231 1.21828 0.96165 0.98013 1.00850 1.20810 0.91871 0.94208 0.86974 1.43845 1.64119 1.05619 1.18761 1.19421 1.06688 0.84063 1.29030 0.91883 1.25715 0.95679 1.00829 1.02025 1.70218 1.11991 1.30504 1.45399 0.85442 0.77765 0.80047 0.77772 1.20270 1.22266 1.20619 1.20668 0.94177 0.90366 0.91765 1.21602 1.00014 0.98546 0.97490 1.21553 0.99182 0.93814 0.99645 1.20617 0.84497 0.95441 1.06705 0.88531 0.89298 0.88586 0.89456 0.86751 0.75225 0.92264 0.89629 0.92624 0.90575 0.99144 0.93778 0.94250 0.94491 0.94611 0.92549 0.92741 0.91434 0.87456 0.85579 0.86029 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.76 10.51 71.24 0.75 -0.01 16 2 C 0.21 4.59 8.15 138.48 1.13 5.72 16 3 N -0.56 -12.88 11.18 -179.31 -2.01 -14.89 16 4 C 0.28 5.28 7.72 138.36 1.07 6.35 16 5 N -0.38 -7.84 4.04 -338.34 -1.37 -9.21 16 6 N -0.35 -8.60 12.74 -51.08 -0.65 -9.25 16 7 C 0.14 2.16 6.42 86.52 0.56 2.71 16 8 C -0.11 -1.44 2.54 -11.38 -0.03 -1.47 16 9 H 0.14 1.15 8.12 -2.39 -0.02 1.13 16 10 C 0.53 10.64 6.98 87.66 0.61 11.25 16 11 O -0.57 -16.10 15.33 -3.06 -0.05 -16.14 16 12 N -0.71 -14.34 4.79 -452.04 -2.16 -16.50 16 13 C 0.17 4.72 1.96 43.01 0.08 4.80 16 14 H 0.07 2.06 6.65 -2.39 -0.02 2.05 16 15 C -0.10 -2.94 5.00 29.76 0.15 -2.79 16 16 C -0.13 -4.34 5.71 30.23 0.17 -4.17 16 17 C 0.19 8.59 4.66 86.49 0.40 8.99 16 18 N -0.60 -28.70 2.27 -698.37 -1.59 -30.29 16 19 C -0.26 -13.86 9.44 84.03 0.79 -13.07 16 20 H 0.06 3.29 7.88 -2.91 -0.02 3.27 16 21 C -0.05 -2.57 4.87 84.86 0.41 -2.15 16 22 N -0.93 -54.21 11.01 21.65 0.24 -53.97 16 23 Si 0.96 44.08 29.58 68.60 2.03 46.11 16 24 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 25 H -0.30 -13.76 7.11 99.48 0.71 -13.05 16 26 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 27 C 0.16 6.45 5.65 87.38 0.49 6.94 16 28 C -0.14 -4.48 5.20 29.39 0.15 -4.33 16 29 C -0.10 -1.29 4.68 30.80 0.14 -1.15 16 30 C -0.03 -0.35 6.33 30.07 0.19 -0.16 16 31 H 0.10 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.09 1.05 8.14 -2.39 -0.02 1.03 16 33 H 0.10 1.08 8.14 -2.39 -0.02 1.06 16 34 H 0.09 1.53 8.12 -2.38 -0.02 1.51 16 35 H 0.11 1.50 7.88 -2.39 -0.02 1.48 16 36 H 0.41 5.99 8.26 -92.71 -0.77 5.22 16 37 H 0.06 2.02 7.48 -2.39 -0.02 2.00 16 38 H 0.09 1.89 8.05 -2.39 -0.02 1.87 16 39 H 0.06 1.80 7.31 -2.39 -0.02 1.78 16 40 H 0.08 2.27 8.14 -2.39 -0.02 2.25 16 41 H -0.01 -0.50 8.03 -2.39 -0.02 -0.52 16 42 H 0.04 2.28 6.33 -2.38 -0.02 2.27 16 43 H 0.25 14.07 8.31 -92.71 -0.77 13.30 16 44 H 0.04 1.47 8.07 -2.38 -0.02 1.45 16 45 H 0.04 1.52 7.99 -2.39 -0.02 1.50 16 46 H 0.06 1.82 7.95 -2.38 -0.02 1.81 16 47 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.07 1.05 8.12 -2.39 -0.02 1.03 16 49 H 0.11 1.28 7.80 -2.39 -0.02 1.26 16 50 H 0.13 0.80 8.14 -2.39 -0.02 0.78 16 51 H 0.12 1.03 8.14 -2.39 -0.02 1.01 16 Total: -1.00 -73.39 397.43 1.69 -71.70 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.17 Total: 14.97 kcal Atomic # 6 Polarization: 10.40 SS G_CDS: 7.08 Total: 17.48 kcal Atomic # 7 Polarization: -126.57 SS G_CDS: -7.54 Total: -134.11 kcal Atomic # 8 Polarization: -16.10 SS G_CDS: -0.05 Total: -16.14 kcal Atomic # 14 Polarization: 44.08 SS G_CDS: 2.03 Total: 46.11 kcal Total: -73.39 1.69 -71.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052584252.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 115.960 kcal (2) G-P(sol) polarization free energy of solvation -73.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 42.570 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.695 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.695 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds