Wall clock time and date at job start Wed Apr 1 2020 05:48:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30828 * 126.46853 * 2 1 4 4 N 1.28919 * 109.74079 * 179.97438 * 3 2 1 5 5 C 1.29839 * 109.47621 * 359.97438 * 4 3 2 6 6 N 1.34703 * 126.45997 * 179.97438 * 2 1 3 7 7 C 1.46257 * 128.84601 * 0.16779 * 6 2 1 8 8 C 1.53320 * 108.72699 * 162.87393 * 7 6 2 9 9 H 1.09003 * 109.44620 * 290.26420 * 8 7 6 10 10 C 1.50691 * 109.43427 * 170.31945 * 8 7 6 11 11 O 1.21284 * 120.00503 * 359.94042 * 10 8 7 12 12 N 1.34778 * 119.99941 * 179.97438 * 10 8 7 13 13 C 1.46498 * 120.00166 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.20961 * 35.63696 * 13 12 10 15 15 C 1.50126 * 109.21243 * 154.99664 * 13 12 10 16 16 C 1.52529 * 105.41816 * 218.02676 * 15 13 12 17 17 C 1.46241 * 114.27616 * 270.59365 * 16 15 13 18 18 N 1.50160 * 107.53327 * 58.40670 * 17 16 15 19 19 C 1.36933 * 120.54113 * 109.61061 * 18 17 16 20 20 H 1.07998 * 120.00720 * 156.71164 * 19 18 17 21 21 C 1.38820 * 119.99554 * 336.71927 * 19 18 17 22 22 N 1.31616 * 120.00154 * 340.41123 * 21 19 18 23 23 Si 1.86799 * 119.99894 * 160.41784 * 21 19 18 24 24 H 1.48494 * 109.47430 * 59.99454 * 23 21 19 25 25 H 1.48501 * 109.47263 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.47078 * 299.99409 * 23 21 19 27 27 C 1.43436 * 118.92603 * 289.58669 * 18 17 16 28 28 C 1.54838 * 109.20811 * 276.32133 * 13 12 10 29 29 C 1.53140 * 109.58164 * 50.29272 * 8 7 6 30 30 C 1.50795 * 128.51887 * 180.09442 * 5 4 3 31 31 H 1.08995 * 109.47454 * 270.02643 * 1 2 3 32 32 H 1.09002 * 109.46639 * 30.02222 * 1 2 3 33 33 H 1.08997 * 109.47847 * 150.02020 * 1 2 3 34 34 H 1.09005 * 109.59596 * 43.09828 * 7 6 2 35 35 H 1.09003 * 109.59347 * 282.64334 * 7 6 2 36 36 H 0.97001 * 119.99915 * 359.97438 * 12 10 8 37 37 H 1.09001 * 110.24959 * 337.00069 * 15 13 12 38 38 H 1.09003 * 110.25330 * 98.90693 * 15 13 12 39 39 H 1.08991 * 108.52386 * 31.83712 * 16 15 13 40 40 H 1.09001 * 108.52344 * 149.35639 * 16 15 13 41 41 H 1.08999 * 109.84785 * 177.91837 * 17 16 15 42 42 H 1.09005 * 109.84348 * 298.83092 * 17 16 15 43 43 H 0.97000 * 120.00323 * 180.02562 * 22 21 19 44 44 H 1.09003 * 108.16468 * 213.28501 * 27 18 17 45 45 H 1.08999 * 108.16297 * 329.85428 * 27 18 17 46 46 H 1.09000 * 109.35698 * 320.99044 * 28 13 12 47 47 H 1.08997 * 109.36597 * 80.58353 * 28 13 12 48 48 H 1.08996 * 109.49685 * 50.52439 * 29 8 7 49 49 H 1.09002 * 109.49651 * 170.62389 * 29 8 7 50 50 H 1.09004 * 109.73229 * 44.44855 * 30 5 4 51 51 H 1.09002 * 109.76778 * 283.78859 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0521 0.0000 4 7 3.5192 0.6810 0.0005 5 6 3.5815 -0.6159 0.0015 6 7 2.3075 -1.0834 0.0005 7 6 1.9365 -2.4981 -0.0022 8 6 3.1549 -3.3257 -0.4280 9 1 3.3620 -3.1499 -1.4836 10 6 2.8683 -4.7889 -0.2096 11 8 1.7978 -5.1364 0.2423 12 7 3.8019 -5.7115 -0.5158 13 6 3.5231 -7.1340 -0.3041 14 1 2.4724 -7.3294 -0.5189 15 6 4.3767 -7.9483 -1.2325 16 6 3.4931 -9.1063 -1.6850 17 6 3.5612 -10.2865 -0.8242 18 7 3.1565 -9.8622 0.5582 19 6 1.9625 -10.2707 1.0899 20 1 1.8297 -10.2984 2.1613 21 6 0.9229 -10.6494 0.2516 22 7 0.9206 -10.2675 -1.0080 23 14 -0.4731 -11.7009 0.9112 24 1 -1.1503 -10.9845 2.0217 25 1 -1.4501 -11.9650 -0.1755 26 1 0.0712 -12.9887 1.4119 27 6 4.0410 -9.0224 1.3130 28 6 3.8160 -7.4962 1.1726 29 6 4.3716 -2.9142 0.4059 30 6 4.8050 -1.4973 0.0043 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3635 -0.8901 -0.5135 34 1 1.1201 -2.6606 -0.7060 35 1 1.6240 -2.7960 0.9987 36 1 4.6581 -5.4336 -0.8772 37 1 4.6802 -7.3478 -2.0901 38 1 5.2544 -8.3238 -0.7063 39 1 2.4599 -8.7610 -1.7181 40 1 3.7905 -9.3954 -2.6930 41 1 2.8778 -11.0522 -1.1912 42 1 4.5793 -10.6757 -0.8097 43 1 0.1939 -10.5318 -1.5937 44 1 3.9423 -9.2848 2.3663 45 1 5.0635 -9.2445 1.0076 46 1 4.7096 -6.9673 1.5039 47 1 2.9709 -7.1971 1.7926 48 1 4.1097 -2.9298 1.4638 49 1 5.1903 -3.6103 0.2229 50 1 5.5304 -1.1177 0.7239 51 1 5.2489 -1.5151 -0.9911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052956801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:11 Heat of formation + Delta-G solvation = 62.759765 kcal Electronic energy + Delta-G solvation = -31728.473866 eV Core-core repulsion = 27664.641305 eV Total energy + Delta-G solvation = -4063.832561 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.58 seconds Orbital eigenvalues (eV) -43.52534 -40.19396 -38.10764 -36.83022 -34.85234 -34.35110 -32.51952 -31.76950 -31.59907 -30.76405 -29.80376 -27.58734 -26.35909 -25.26135 -24.06984 -23.57344 -22.82894 -21.60084 -20.74151 -20.15923 -19.52479 -19.20999 -17.63077 -16.88055 -16.77174 -16.25362 -15.89385 -15.41735 -15.17326 -14.92996 -14.49994 -14.44464 -14.26634 -13.96384 -13.79796 -13.66250 -13.37677 -13.24335 -12.91361 -12.63464 -12.47851 -12.41090 -12.31819 -11.96876 -11.74710 -11.62649 -11.51137 -11.41849 -11.29774 -10.82493 -10.69922 -10.52493 -10.45541 -10.34853 -10.29548 -10.13279 -9.83652 -9.60501 -9.55848 -9.42128 -9.17179 -8.72876 -8.42902 -6.75676 -5.81902 -3.20593 1.59745 2.16664 2.61659 2.66049 3.22383 3.38539 3.44058 3.45788 3.77168 3.99038 4.15698 4.20607 4.28130 4.49779 4.63686 4.70605 4.81412 4.89874 4.98725 5.14571 5.20727 5.26011 5.28019 5.33975 5.36019 5.43620 5.46788 5.56716 5.60477 5.63329 5.76451 5.78622 5.92209 5.98290 6.17281 6.19779 6.32511 6.38475 6.61330 6.63154 6.75545 6.81309 6.86099 6.92172 7.01485 7.14335 7.53231 7.64572 7.71585 7.91483 8.30767 8.39949 8.54929 9.16403 9.83843 10.35743 11.25846 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.002572 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.519967 B =10882.174643 C =11898.490702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.180 3.820 3 N -0.302 5.302 4 N -0.292 5.292 5 C 0.171 3.829 6 N -0.468 5.468 7 C 0.123 3.877 8 C -0.124 4.124 9 H 0.108 0.892 10 C 0.517 3.483 11 O -0.527 6.527 12 N -0.721 5.721 13 C 0.155 3.845 14 H 0.104 0.896 15 C -0.121 4.121 16 C -0.129 4.129 17 C 0.164 3.836 18 N -0.588 5.588 19 C -0.250 4.250 20 H 0.067 0.933 21 C 0.004 3.996 22 N -0.900 5.900 23 Si 0.900 3.100 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.285 1.285 27 C 0.162 3.838 28 C -0.150 4.150 29 C -0.117 4.117 30 C -0.031 4.031 31 H 0.087 0.913 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.104 0.896 35 H 0.104 0.896 36 H 0.392 0.608 37 H 0.053 0.947 38 H 0.063 0.937 39 H 0.103 0.897 40 H 0.030 0.970 41 H 0.091 0.909 42 H 0.006 0.994 43 H 0.253 0.747 44 H 0.034 0.966 45 H 0.028 0.972 46 H 0.044 0.956 47 H 0.056 0.944 48 H 0.080 0.920 49 H 0.093 0.907 50 H 0.104 0.896 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.569 14.113 -1.562 16.091 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.087 4.087 3 N -0.143 5.143 4 N -0.132 5.132 5 C -0.097 4.097 6 N -0.159 5.159 7 C 0.000 4.000 8 C -0.146 4.146 9 H 0.126 0.874 10 C 0.301 3.699 11 O -0.403 6.403 12 N -0.371 5.371 13 C 0.053 3.947 14 H 0.122 0.878 15 C -0.159 4.159 16 C -0.168 4.168 17 C 0.041 3.959 18 N -0.309 5.309 19 C -0.379 4.379 20 H 0.084 0.916 21 C -0.194 4.194 22 N -0.545 5.545 23 Si 0.730 3.270 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.212 1.212 27 C 0.032 3.968 28 C -0.192 4.192 29 C -0.156 4.156 30 C -0.070 4.070 31 H 0.105 0.895 32 H 0.113 0.887 33 H 0.098 0.902 34 H 0.122 0.878 35 H 0.122 0.878 36 H 0.225 0.775 37 H 0.071 0.929 38 H 0.082 0.918 39 H 0.121 0.879 40 H 0.049 0.951 41 H 0.109 0.891 42 H 0.024 0.976 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.047 0.953 46 H 0.063 0.937 47 H 0.075 0.925 48 H 0.099 0.901 49 H 0.111 0.889 50 H 0.123 0.877 51 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges 7.044 15.202 -1.360 16.810 hybrid contribution -0.843 -1.546 0.047 1.761 sum 6.201 13.656 -1.314 15.056 Atomic orbital electron populations 1.20238 0.83648 1.04621 1.04236 1.24681 0.97151 0.82709 1.04169 1.74476 0.96104 1.23697 1.20044 1.74031 1.12372 1.08049 1.18713 1.24688 0.87117 0.92583 1.05276 1.46029 1.06965 1.08605 1.54260 1.21801 0.97783 0.74980 1.05431 1.21648 0.96087 0.93791 1.03074 0.87383 1.19923 0.84804 0.86602 0.78594 1.90801 1.24052 1.81596 1.43862 1.46502 1.17414 1.08127 1.65102 1.21339 1.02206 0.75850 0.95351 0.87849 1.21363 0.98764 0.98155 0.97625 1.20928 1.02071 0.96394 0.97448 1.20163 0.95414 0.96197 0.84126 1.44248 1.19129 1.52656 1.14870 1.19153 0.89332 1.38085 0.91368 0.91560 1.24875 0.97064 1.01139 0.96313 1.69935 1.32913 1.46233 1.05457 0.86398 0.81825 0.80893 0.77843 1.21037 1.21738 1.21203 1.20351 0.93005 0.87899 0.95576 1.23297 0.99835 1.00729 0.95363 1.21747 0.96900 0.96242 1.00705 1.20230 0.91213 0.91026 1.04530 0.89456 0.88674 0.90206 0.87824 0.87766 0.77458 0.92863 0.91801 0.87921 0.95138 0.89111 0.97557 0.93708 0.94820 0.95319 0.93696 0.92545 0.90122 0.88890 0.87745 0.88401 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.52 10.29 36.00 0.37 -0.15 16 2 C 0.18 2.10 8.07 -155.45 -1.25 0.85 16 3 N -0.30 -4.41 12.23 32.70 0.40 -4.01 16 4 N -0.29 -4.23 12.21 32.75 0.40 -3.83 16 5 C 0.17 1.94 7.75 -155.31 -1.20 0.74 16 6 N -0.47 -5.08 3.11 -110.86 -0.35 -5.43 16 7 C 0.12 1.20 5.48 -4.01 -0.02 1.18 16 8 C -0.12 -1.11 2.54 -91.54 -0.23 -1.34 16 9 H 0.11 0.81 8.12 -51.93 -0.42 0.39 16 10 C 0.52 6.80 7.10 -10.99 -0.08 6.72 16 11 O -0.53 -9.58 15.49 5.55 0.09 -9.49 16 12 N -0.72 -9.01 4.80 -54.26 -0.26 -9.27 16 13 C 0.15 2.62 2.22 -68.39 -0.15 2.47 16 14 H 0.10 2.33 6.27 -51.93 -0.33 2.01 16 15 C -0.12 -1.90 5.33 -28.40 -0.15 -2.05 16 16 C -0.13 -2.54 5.02 -30.18 -0.15 -2.69 16 17 C 0.16 3.59 5.25 -5.21 -0.03 3.57 16 18 N -0.59 -13.68 2.60 -175.08 -0.46 -14.14 16 19 C -0.25 -6.57 9.63 -15.06 -0.14 -6.71 16 20 H 0.07 1.75 7.89 -52.49 -0.41 1.34 16 21 C 0.00 0.11 4.91 -17.43 -0.09 0.02 16 22 N -0.90 -24.25 9.43 55.49 0.52 -23.72 16 23 Si 0.90 21.30 29.60 -169.99 -5.03 16.27 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.36 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 27 C 0.16 3.17 5.17 -4.66 -0.02 3.15 16 28 C -0.15 -2.65 5.98 -24.76 -0.15 -2.79 16 29 C -0.12 -0.82 5.23 -26.39 -0.14 -0.96 16 30 C -0.03 -0.22 6.34 -27.57 -0.17 -0.39 16 31 H 0.09 0.58 8.14 -51.93 -0.42 0.15 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.08 0.51 7.75 -51.93 -0.40 0.10 16 34 H 0.10 0.96 7.85 -51.93 -0.41 0.55 16 35 H 0.10 1.11 7.79 -51.93 -0.40 0.70 16 36 H 0.39 3.47 7.81 -40.82 -0.32 3.15 16 37 H 0.05 0.71 7.85 -51.93 -0.41 0.30 16 38 H 0.06 0.96 6.30 -51.93 -0.33 0.64 16 39 H 0.10 2.42 5.29 -51.93 -0.27 2.14 16 40 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 41 H 0.09 2.25 6.05 -51.93 -0.31 1.94 16 42 H 0.01 0.13 8.13 -51.93 -0.42 -0.30 16 43 H 0.25 6.74 8.31 -40.82 -0.34 6.40 16 44 H 0.03 0.67 7.99 -51.93 -0.41 0.26 16 45 H 0.03 0.51 6.90 -51.93 -0.36 0.15 16 46 H 0.04 0.67 8.12 -51.93 -0.42 0.24 16 47 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 48 H 0.08 0.65 8.12 -51.93 -0.42 0.23 16 49 H 0.09 0.48 7.32 -51.93 -0.38 0.10 16 50 H 0.10 0.64 8.14 -51.93 -0.42 0.22 16 51 H 0.10 0.55 8.14 -51.93 -0.42 0.13 16 LS Contribution 389.78 15.07 5.87 5.87 Total: -1.00 -32.95 389.78 -10.53 -43.48 By element: Atomic # 1 Polarization: 10.78 SS G_CDS: -8.11 Total: 2.67 kcal Atomic # 6 Polarization: 5.21 SS G_CDS: -3.62 Total: 1.60 kcal Atomic # 7 Polarization: -60.66 SS G_CDS: 0.26 Total: -60.39 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.30 SS G_CDS: -5.03 Total: 16.27 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.95 -10.53 -43.48 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052956801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 106.238 kcal (2) G-P(sol) polarization free energy of solvation -32.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 73.293 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.533 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.478 kcal (6) G-S(sol) free energy of system = (1) + (5) 62.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.58 seconds