Wall clock time and date at job start Wed Apr 1 2020 05:48:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.30828 * 126.46853 * 2 1 4 4 N 1.28919 * 109.74079 * 179.97438 * 3 2 1 5 5 C 1.29839 * 109.47621 * 359.97438 * 4 3 2 6 6 N 1.34703 * 126.45997 * 179.97438 * 2 1 3 7 7 C 1.46257 * 128.84601 * 0.16779 * 6 2 1 8 8 C 1.53320 * 108.72699 * 162.87393 * 7 6 2 9 9 H 1.09003 * 109.44620 * 290.26420 * 8 7 6 10 10 C 1.50691 * 109.43427 * 170.31945 * 8 7 6 11 11 O 1.21284 * 120.00503 * 359.94042 * 10 8 7 12 12 N 1.34778 * 119.99941 * 179.97438 * 10 8 7 13 13 C 1.46498 * 120.00166 * 180.02562 * 12 10 8 14 14 H 1.09003 * 109.20961 * 35.63696 * 13 12 10 15 15 C 1.50126 * 109.21243 * 154.99664 * 13 12 10 16 16 C 1.52529 * 105.41816 * 218.02676 * 15 13 12 17 17 C 1.46241 * 114.27616 * 270.59365 * 16 15 13 18 18 N 1.50160 * 107.53327 * 58.40670 * 17 16 15 19 19 C 1.36933 * 120.54113 * 109.61061 * 18 17 16 20 20 H 1.07998 * 120.00720 * 156.71164 * 19 18 17 21 21 C 1.38820 * 119.99554 * 336.71927 * 19 18 17 22 22 N 1.31616 * 120.00154 * 340.41123 * 21 19 18 23 23 Si 1.86799 * 119.99894 * 160.41784 * 21 19 18 24 24 H 1.48494 * 109.47430 * 59.99454 * 23 21 19 25 25 H 1.48501 * 109.47263 * 179.97438 * 23 21 19 26 26 H 1.48509 * 109.47078 * 299.99409 * 23 21 19 27 27 C 1.43436 * 118.92603 * 289.58669 * 18 17 16 28 28 C 1.54838 * 109.20811 * 276.32133 * 13 12 10 29 29 C 1.53140 * 109.58164 * 50.29272 * 8 7 6 30 30 C 1.50795 * 128.51887 * 180.09442 * 5 4 3 31 31 H 1.08995 * 109.47454 * 270.02643 * 1 2 3 32 32 H 1.09002 * 109.46639 * 30.02222 * 1 2 3 33 33 H 1.08997 * 109.47847 * 150.02020 * 1 2 3 34 34 H 1.09005 * 109.59596 * 43.09828 * 7 6 2 35 35 H 1.09003 * 109.59347 * 282.64334 * 7 6 2 36 36 H 0.97001 * 119.99915 * 359.97438 * 12 10 8 37 37 H 1.09001 * 110.24959 * 337.00069 * 15 13 12 38 38 H 1.09003 * 110.25330 * 98.90693 * 15 13 12 39 39 H 1.08991 * 108.52386 * 31.83712 * 16 15 13 40 40 H 1.09001 * 108.52344 * 149.35639 * 16 15 13 41 41 H 1.08999 * 109.84785 * 177.91837 * 17 16 15 42 42 H 1.09005 * 109.84348 * 298.83092 * 17 16 15 43 43 H 0.97000 * 120.00323 * 180.02562 * 22 21 19 44 44 H 1.09003 * 108.16468 * 213.28501 * 27 18 17 45 45 H 1.08999 * 108.16297 * 329.85428 * 27 18 17 46 46 H 1.09000 * 109.35698 * 320.99044 * 28 13 12 47 47 H 1.08997 * 109.36597 * 80.58353 * 28 13 12 48 48 H 1.08996 * 109.49685 * 50.52439 * 29 8 7 49 49 H 1.09002 * 109.49651 * 170.62389 * 29 8 7 50 50 H 1.09004 * 109.73229 * 44.44855 * 30 5 4 51 51 H 1.09002 * 109.76778 * 283.78859 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0521 0.0000 4 7 3.5192 0.6810 0.0005 5 6 3.5815 -0.6159 0.0015 6 7 2.3075 -1.0834 0.0005 7 6 1.9365 -2.4981 -0.0022 8 6 3.1549 -3.3257 -0.4280 9 1 3.3620 -3.1499 -1.4836 10 6 2.8683 -4.7889 -0.2096 11 8 1.7978 -5.1364 0.2423 12 7 3.8019 -5.7115 -0.5158 13 6 3.5231 -7.1340 -0.3041 14 1 2.4724 -7.3294 -0.5189 15 6 4.3767 -7.9483 -1.2325 16 6 3.4931 -9.1063 -1.6850 17 6 3.5612 -10.2865 -0.8242 18 7 3.1565 -9.8622 0.5582 19 6 1.9625 -10.2707 1.0899 20 1 1.8297 -10.2984 2.1613 21 6 0.9229 -10.6494 0.2516 22 7 0.9206 -10.2675 -1.0080 23 14 -0.4731 -11.7009 0.9112 24 1 -1.1503 -10.9845 2.0217 25 1 -1.4501 -11.9650 -0.1755 26 1 0.0712 -12.9887 1.4119 27 6 4.0410 -9.0224 1.3130 28 6 3.8160 -7.4962 1.1726 29 6 4.3716 -2.9142 0.4059 30 6 4.8050 -1.4973 0.0043 31 1 -0.3634 0.0005 1.0276 32 1 -0.3633 0.8898 -0.5142 33 1 -0.3635 -0.8901 -0.5135 34 1 1.1201 -2.6606 -0.7060 35 1 1.6240 -2.7960 0.9987 36 1 4.6581 -5.4336 -0.8772 37 1 4.6802 -7.3478 -2.0901 38 1 5.2544 -8.3238 -0.7063 39 1 2.4599 -8.7610 -1.7181 40 1 3.7905 -9.3954 -2.6930 41 1 2.8778 -11.0522 -1.1912 42 1 4.5793 -10.6757 -0.8097 43 1 0.1939 -10.5318 -1.5937 44 1 3.9423 -9.2848 2.3663 45 1 5.0635 -9.2445 1.0076 46 1 4.7096 -6.9673 1.5039 47 1 2.9709 -7.1971 1.7926 48 1 4.1097 -2.9298 1.4638 49 1 5.1903 -3.6103 0.2229 50 1 5.5304 -1.1177 0.7239 51 1 5.2489 -1.5151 -0.9911 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052956801.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:10 Heat of formation + Delta-G solvation = 42.538320 kcal Electronic energy + Delta-G solvation = -31729.350734 eV Core-core repulsion = 27664.641305 eV Total energy + Delta-G solvation = -4064.709429 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -44.39046 -41.30393 -39.50235 -37.80193 -36.27806 -35.17957 -34.02133 -33.28447 -32.74311 -31.64626 -31.14235 -28.36422 -28.00262 -26.27793 -25.63112 -24.59463 -24.08236 -22.45566 -22.00538 -21.41292 -20.74005 -20.42795 -18.63185 -18.50868 -17.67264 -17.23487 -17.08433 -16.91799 -16.34418 -15.97744 -15.83571 -15.60403 -15.24335 -15.08352 -15.01574 -14.82712 -14.68809 -14.03196 -13.99945 -13.89006 -13.50742 -13.46875 -13.24410 -13.20831 -13.18604 -13.08029 -12.66519 -12.64296 -12.38184 -12.26292 -12.08760 -12.08352 -11.91991 -11.71470 -11.52894 -11.40026 -11.18323 -11.17198 -11.09509 -10.77324 -10.42262 -10.04263 -9.92732 -8.62004 -7.81986 -5.21058 0.77291 1.33793 1.46474 1.47731 1.53664 1.59370 1.74690 2.22443 2.54692 3.04902 3.24741 3.31241 3.39522 3.52946 3.56829 3.65440 3.90704 3.98430 4.07012 4.10857 4.20569 4.23623 4.30955 4.38500 4.53515 4.54444 4.59386 4.64528 4.68109 4.78239 4.81397 4.84427 4.91097 4.93392 4.94304 5.00264 5.04535 5.11743 5.20897 5.22115 5.33474 5.35811 5.45411 5.54851 5.68541 5.71655 5.82295 5.84369 6.23590 6.44303 6.62231 7.21214 7.32830 7.64631 7.95411 8.42585 9.21736 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016579 B = 0.002572 C = 0.002353 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1688.519967 B =10882.174643 C =11898.490702 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.177 3.823 3 N -0.344 5.344 4 N -0.334 5.334 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.109 4.109 9 H 0.134 0.866 10 C 0.518 3.482 11 O -0.584 6.584 12 N -0.705 5.705 13 C 0.169 3.831 14 H 0.041 0.959 15 C -0.106 4.106 16 C -0.124 4.124 17 C 0.166 3.834 18 N -0.602 5.602 19 C -0.260 4.260 20 H 0.056 0.944 21 C -0.042 4.042 22 N -0.913 5.913 23 Si 0.952 3.048 24 H -0.287 1.287 25 H -0.295 1.295 26 H -0.280 1.280 27 C 0.154 3.846 28 C -0.138 4.138 29 C -0.110 4.110 30 C -0.025 4.025 31 H 0.097 0.903 32 H 0.103 0.897 33 H 0.093 0.907 34 H 0.106 0.894 35 H 0.092 0.908 36 H 0.417 0.583 37 H 0.088 0.912 38 H 0.083 0.917 39 H 0.059 0.941 40 H 0.044 0.956 41 H 0.053 0.947 42 H 0.032 0.968 43 H 0.245 0.755 44 H 0.024 0.976 45 H 0.059 0.941 46 H 0.084 0.916 47 H 0.017 0.983 48 H 0.069 0.931 49 H 0.124 0.876 50 H 0.119 0.881 51 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.395 14.658 -2.176 18.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.091 4.091 3 N -0.184 5.184 4 N -0.172 5.172 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.130 4.130 9 H 0.152 0.848 10 C 0.304 3.696 11 O -0.463 6.463 12 N -0.357 5.357 13 C 0.064 3.936 14 H 0.060 0.940 15 C -0.144 4.144 16 C -0.163 4.163 17 C 0.043 3.957 18 N -0.324 5.324 19 C -0.391 4.391 20 H 0.074 0.926 21 C -0.238 4.238 22 N -0.559 5.559 23 Si 0.781 3.219 24 H -0.213 1.213 25 H -0.221 1.221 26 H -0.207 1.207 27 C 0.026 3.974 28 C -0.180 4.180 29 C -0.148 4.148 30 C -0.065 4.065 31 H 0.116 0.884 32 H 0.122 0.878 33 H 0.111 0.889 34 H 0.124 0.876 35 H 0.110 0.890 36 H 0.255 0.745 37 H 0.106 0.894 38 H 0.102 0.898 39 H 0.078 0.922 40 H 0.062 0.938 41 H 0.072 0.928 42 H 0.050 0.950 43 H 0.055 0.945 44 H 0.042 0.958 45 H 0.077 0.923 46 H 0.103 0.897 47 H 0.036 0.964 48 H 0.088 0.912 49 H 0.142 0.858 50 H 0.137 0.863 51 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 9.935 15.781 -1.979 18.753 hybrid contribution -1.724 -1.730 0.278 2.459 sum 8.210 14.051 -1.701 16.363 Atomic orbital electron populations 1.20408 0.81354 1.05701 1.05224 1.25319 0.98514 0.82432 1.02822 1.74384 0.96747 1.25295 1.21968 1.73935 1.12656 1.09850 1.20797 1.25494 0.88430 0.92315 1.03243 1.46113 1.06934 1.08689 1.54224 1.21788 0.98575 0.74583 1.04931 1.21562 0.96486 0.90014 1.04971 0.84844 1.20586 0.83760 0.88246 0.77042 1.90796 1.26513 1.82745 1.46288 1.46178 1.18525 1.06239 1.64765 1.20783 0.99058 0.78596 0.95130 0.94049 1.21264 0.97959 0.96548 0.98626 1.20742 1.00685 0.96943 0.97947 1.20115 0.95482 0.96333 0.83791 1.44394 1.18588 1.53824 1.15636 1.19309 0.90710 1.37975 0.91061 0.92624 1.25458 0.99026 1.02472 0.96817 1.70109 1.33019 1.46826 1.05960 0.85590 0.79642 0.79699 0.76945 1.21324 1.22095 1.20676 1.20508 0.93619 0.88662 0.94646 1.23137 0.99967 0.99467 0.95467 1.21766 0.96647 0.96832 0.99581 1.20466 0.89634 0.89851 1.06505 0.88426 0.87812 0.88867 0.87553 0.89023 0.74519 0.89371 0.89823 0.92244 0.93775 0.92845 0.95045 0.94539 0.95802 0.92275 0.89713 0.96360 0.91204 0.85826 0.86302 0.85804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.99 10.29 71.23 0.73 -0.26 16 2 C 0.18 4.06 8.07 138.14 1.11 5.18 16 3 N -0.34 -10.06 12.23 -50.46 -0.62 -10.68 16 4 N -0.33 -9.48 12.21 -50.28 -0.61 -10.09 16 5 C 0.17 3.65 7.75 138.14 1.07 4.72 16 6 N -0.47 -9.63 3.11 -504.66 -1.57 -11.21 16 7 C 0.12 2.28 5.48 86.53 0.47 2.75 16 8 C -0.11 -1.63 2.54 -11.39 -0.03 -1.66 16 9 H 0.13 1.42 8.12 -2.39 -0.02 1.40 16 10 C 0.52 12.73 7.10 87.65 0.62 13.35 16 11 O -0.58 -21.60 15.49 -3.04 -0.05 -21.64 16 12 N -0.71 -15.41 4.80 -443.96 -2.13 -17.54 16 13 C 0.17 5.44 2.22 44.69 0.10 5.54 16 14 H 0.04 1.92 6.27 -2.39 -0.01 1.90 16 15 C -0.11 -2.97 5.33 29.51 0.16 -2.81 16 16 C -0.12 -4.76 5.02 28.36 0.14 -4.61 16 17 C 0.17 7.18 5.25 83.58 0.44 7.62 16 18 N -0.60 -28.14 2.60 -707.82 -1.84 -29.98 16 19 C -0.26 -14.05 9.63 84.04 0.81 -13.24 16 20 H 0.06 3.05 7.89 -2.91 -0.02 3.02 16 21 C -0.04 -2.27 4.91 84.86 0.42 -1.86 16 22 N -0.91 -51.10 9.43 21.65 0.20 -50.89 16 23 Si 0.95 45.03 29.60 68.60 2.03 47.06 16 24 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 25 H -0.29 -13.99 7.11 99.48 0.71 -13.28 16 26 H -0.28 -12.92 7.11 99.48 0.71 -12.21 16 27 C 0.15 5.83 5.17 87.60 0.45 6.29 16 28 C -0.14 -4.67 5.98 31.87 0.19 -4.48 16 29 C -0.11 -1.11 5.23 30.81 0.16 -0.95 16 30 C -0.03 -0.27 6.34 30.05 0.19 -0.08 16 31 H 0.10 1.22 8.14 -2.39 -0.02 1.20 16 32 H 0.10 1.31 8.14 -2.39 -0.02 1.30 16 33 H 0.09 1.09 7.75 -2.39 -0.02 1.07 16 34 H 0.11 1.89 7.85 -2.38 -0.02 1.87 16 35 H 0.09 1.94 7.79 -2.39 -0.02 1.92 16 36 H 0.42 5.10 7.81 -92.71 -0.72 4.38 16 37 H 0.09 1.88 7.85 -2.39 -0.02 1.86 16 38 H 0.08 2.08 6.30 -2.39 -0.02 2.06 16 39 H 0.06 2.86 5.29 -2.39 -0.01 2.85 16 40 H 0.04 1.53 8.14 -2.39 -0.02 1.51 16 41 H 0.05 2.71 6.05 -2.39 -0.01 2.69 16 42 H 0.03 1.19 8.13 -2.38 -0.02 1.17 16 43 H 0.25 13.60 8.31 -92.71 -0.77 12.83 16 44 H 0.02 0.93 7.99 -2.39 -0.02 0.92 16 45 H 0.06 1.88 6.90 -2.39 -0.02 1.87 16 46 H 0.08 2.18 8.12 -2.39 -0.02 2.16 16 47 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 48 H 0.07 0.91 8.12 -2.39 -0.02 0.89 16 49 H 0.12 0.55 7.32 -2.39 -0.02 0.53 16 50 H 0.12 1.01 8.14 -2.38 -0.02 0.99 16 51 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 Total: -1.00 -78.64 389.78 2.68 -75.96 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: 0.22 Total: 13.50 kcal Atomic # 6 Polarization: 8.47 SS G_CDS: 7.04 Total: 15.51 kcal Atomic # 7 Polarization: -123.82 SS G_CDS: -6.57 Total: -130.39 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.05 Total: -21.64 kcal Atomic # 14 Polarization: 45.03 SS G_CDS: 2.03 Total: 47.06 kcal Total: -78.64 2.68 -75.96 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052956801.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 118.498 kcal (2) G-P(sol) polarization free energy of solvation -78.640 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.960 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.538 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds