Wall clock time and date at job start Wed Apr 1 2020 05:48:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 126.46138 * 2 1 4 4 N 1.28910 * 109.73605 * 180.02562 * 3 2 1 5 5 C 1.29829 * 109.48130 * 0.02562 * 4 3 2 6 6 N 1.34692 * 126.46403 * 180.02562 * 2 1 3 7 7 C 1.46253 * 128.85124 * 359.82715 * 6 2 1 8 8 C 1.53317 * 108.85940 * 197.00332 * 7 6 2 9 9 H 1.09005 * 109.45005 * 69.81015 * 8 7 6 10 10 C 1.50695 * 109.45688 * 189.75065 * 8 7 6 11 11 O 1.21282 * 119.99726 * 0.02562 * 10 8 7 12 12 N 1.34774 * 120.00232 * 179.97438 * 10 8 7 13 13 C 1.46503 * 120.00353 * 179.97438 * 12 10 8 14 14 H 1.09004 * 108.44357 * 327.30824 * 13 12 10 15 15 C 1.52562 * 108.51198 * 209.76933 * 13 12 10 16 16 C 1.50882 * 109.35908 * 153.73407 * 15 13 12 17 17 C 1.53941 * 110.09712 * 91.88342 * 16 15 13 18 18 N 1.47606 * 112.14261 * 319.43736 * 17 16 15 19 19 C 1.36933 * 118.64374 * 137.84470 * 18 17 16 20 20 H 1.08005 * 119.99789 * 207.18593 * 19 18 17 21 21 C 1.38810 * 120.00181 * 27.19060 * 19 18 17 22 22 N 1.31613 * 119.99896 * 16.73113 * 21 19 18 23 23 Si 1.86806 * 119.99967 * 196.73484 * 21 19 18 24 24 H 1.48500 * 109.47068 * 93.99517 * 23 21 19 25 25 H 1.48504 * 109.47016 * 213.99235 * 23 21 19 26 26 H 1.48495 * 109.46890 * 333.99301 * 23 21 19 27 27 C 1.44583 * 122.71159 * 317.86752 * 18 17 16 28 28 C 1.47084 * 108.51064 * 84.99960 * 13 12 10 29 29 C 1.53236 * 109.53280 * 309.92259 * 8 7 6 30 30 C 1.50807 * 128.52454 * 179.83395 * 5 4 3 31 31 H 1.08998 * 109.47739 * 269.97580 * 1 2 3 32 32 H 1.08995 * 109.46973 * 29.98023 * 1 2 3 33 33 H 1.09007 * 109.46731 * 149.97321 * 1 2 3 34 34 H 1.08994 * 109.59598 * 316.85831 * 7 6 2 35 35 H 1.09003 * 109.59054 * 77.15758 * 7 6 2 36 36 H 0.97006 * 119.99988 * 0.02562 * 12 10 8 37 37 H 1.09003 * 109.48950 * 273.69865 * 15 13 12 38 38 H 1.08998 * 109.49414 * 33.76893 * 15 13 12 39 39 H 1.09003 * 109.36250 * 331.69238 * 16 15 13 40 40 H 1.09003 * 109.26396 * 212.00956 * 16 15 13 41 41 H 1.09006 * 108.94921 * 198.75368 * 17 16 15 42 42 H 1.09002 * 108.94799 * 80.12186 * 17 16 15 43 43 H 0.97009 * 120.00122 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.44849 * 330.68601 * 27 18 17 45 45 H 1.08999 * 109.44893 * 210.76586 * 27 18 17 46 46 H 1.09000 * 109.33290 * 304.31772 * 28 13 12 47 47 H 1.09005 * 109.33153 * 63.79983 * 28 13 12 48 48 H 1.09004 * 109.40907 * 309.26931 * 29 8 7 49 49 H 1.08992 * 109.46699 * 189.24000 * 29 8 7 50 50 H 1.09000 * 109.73034 * 315.57776 * 30 5 4 51 51 H 1.08997 * 109.72731 * 76.21442 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3075 -1.0832 -0.0005 7 6 1.9368 -2.4980 0.0023 8 6 3.1543 -3.3285 0.4248 9 1 3.3631 -3.1554 1.4805 10 6 2.8654 -4.7909 0.2038 11 8 1.7936 -5.1360 -0.2468 12 7 3.7985 -5.7153 0.5061 13 6 3.5175 -7.1371 0.2918 14 1 2.4542 -7.3078 0.4607 15 6 4.3038 -7.9464 1.3186 16 6 3.5977 -9.2557 1.5706 17 6 4.1426 -10.3412 0.6248 18 7 4.3755 -9.8255 -0.7385 19 6 5.5164 -10.2007 -1.3962 20 1 5.9422 -9.5551 -2.1501 21 6 6.1256 -11.4108 -1.0942 22 7 5.4596 -12.3372 -0.4380 23 14 7.8908 -11.7246 -1.6189 24 1 8.8086 -11.3660 -0.5079 25 1 8.0591 -13.1610 -1.9560 26 1 8.2078 -10.8962 -2.8098 27 6 3.4490 -8.9401 -1.4078 28 6 3.8273 -7.4687 -1.1072 29 6 4.3715 -2.9137 -0.4085 30 6 4.8052 -1.4970 -0.0058 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 1.1211 -2.6607 0.7067 35 1 1.6209 -2.7950 -0.9978 36 1 4.6559 -5.4393 0.8662 37 1 5.3063 -8.1413 0.9376 38 1 4.3714 -7.3845 2.2502 39 1 2.5289 -9.1290 1.3977 40 1 3.7631 -9.5605 2.6040 41 1 3.4252 -11.1604 0.5755 42 1 5.0830 -10.7200 1.0253 43 1 5.8854 -13.1828 -0.2266 44 1 2.4380 -9.1351 -1.0502 45 1 3.4932 -9.1139 -2.4829 46 1 3.2641 -6.8093 -1.7676 47 1 4.8936 -7.3271 -1.2840 48 1 4.1086 -2.9287 -1.4662 49 1 5.1904 -3.6097 -0.2268 50 1 5.5298 -1.1171 -0.7260 51 1 5.2497 -1.5142 0.9893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001052956802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:17 Heat of formation + Delta-G solvation = 54.081823 kcal Electronic energy + Delta-G solvation = -31326.211244 eV Core-core repulsion = 27262.002379 eV Total energy + Delta-G solvation = -4064.208865 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -43.60789 -40.46528 -38.18793 -36.92455 -35.02743 -34.45197 -32.72868 -31.93745 -31.63008 -30.87001 -29.91606 -27.67119 -26.33332 -25.34621 -24.10768 -23.64371 -23.11450 -21.70751 -20.78521 -20.28986 -19.80269 -19.25532 -17.78920 -16.98830 -16.81248 -16.39386 -16.16288 -15.57335 -15.22664 -15.16023 -14.57709 -14.43712 -14.24699 -14.07808 -14.00495 -13.65205 -13.46346 -13.40898 -13.03426 -12.91683 -12.70423 -12.54334 -12.52380 -12.08077 -11.85902 -11.67475 -11.52560 -11.48948 -11.32530 -10.90824 -10.81257 -10.59604 -10.54663 -10.42278 -10.34688 -10.23027 -10.03555 -9.83738 -9.78351 -9.66822 -9.24933 -9.02262 -8.46232 -6.72214 -5.83989 -3.28210 1.51081 2.06346 2.39037 2.58822 3.02472 3.31845 3.39999 3.40928 3.67349 3.88629 4.04950 4.10140 4.18455 4.44664 4.50944 4.59791 4.70595 4.77842 4.89647 5.03669 5.06032 5.10523 5.18973 5.26697 5.29586 5.33732 5.36601 5.49149 5.52036 5.53438 5.59712 5.67340 5.90317 5.91185 5.95082 6.05618 6.20250 6.36092 6.39796 6.51729 6.54632 6.64880 6.67928 6.73972 6.81355 6.94497 7.34356 7.41240 7.62951 7.77307 8.05377 8.41693 8.47612 9.18464 9.85089 10.30719 11.23362 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.002203 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.608591 B =12705.934360 C =13342.448610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C 0.179 3.821 3 N -0.301 5.301 4 N -0.291 5.291 5 C 0.172 3.828 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.124 4.124 9 H 0.109 0.891 10 C 0.522 3.478 11 O -0.539 6.539 12 N -0.720 5.720 13 C 0.161 3.839 14 H 0.076 0.924 15 C -0.112 4.112 16 C -0.140 4.140 17 C 0.177 3.823 18 N -0.590 5.590 19 C -0.260 4.260 20 H 0.065 0.935 21 C 0.006 3.994 22 N -0.902 5.902 23 Si 0.899 3.101 24 H -0.288 1.288 25 H -0.292 1.292 26 H -0.279 1.279 27 C 0.162 3.838 28 C -0.154 4.154 29 C -0.119 4.119 30 C -0.031 4.031 31 H 0.086 0.914 32 H 0.095 0.905 33 H 0.079 0.921 34 H 0.102 0.898 35 H 0.103 0.897 36 H 0.397 0.603 37 H 0.081 0.919 38 H 0.050 0.950 39 H 0.048 0.952 40 H 0.056 0.944 41 H 0.026 0.974 42 H 0.072 0.928 43 H 0.253 0.747 44 H 0.033 0.967 45 H 0.049 0.951 46 H 0.051 0.949 47 H 0.063 0.937 48 H 0.081 0.919 49 H 0.094 0.906 50 H 0.106 0.894 51 H 0.099 0.901 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.814 18.747 4.685 20.179 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.088 4.088 3 N -0.142 5.142 4 N -0.131 5.131 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.146 4.146 9 H 0.127 0.873 10 C 0.306 3.694 11 O -0.416 6.416 12 N -0.370 5.370 13 C 0.058 3.942 14 H 0.094 0.906 15 C -0.150 4.150 16 C -0.180 4.180 17 C 0.052 3.948 18 N -0.311 5.311 19 C -0.390 4.390 20 H 0.082 0.918 21 C -0.193 4.193 22 N -0.546 5.546 23 Si 0.729 3.271 24 H -0.215 1.215 25 H -0.218 1.218 26 H -0.204 1.204 27 C 0.033 3.967 28 C -0.195 4.195 29 C -0.157 4.157 30 C -0.070 4.070 31 H 0.105 0.895 32 H 0.114 0.886 33 H 0.098 0.902 34 H 0.121 0.879 35 H 0.121 0.879 36 H 0.231 0.769 37 H 0.100 0.900 38 H 0.068 0.932 39 H 0.066 0.934 40 H 0.075 0.925 41 H 0.044 0.956 42 H 0.091 0.909 43 H 0.063 0.937 44 H 0.052 0.948 45 H 0.067 0.933 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.100 0.900 49 H 0.113 0.887 50 H 0.124 0.876 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -6.156 19.724 4.415 21.129 hybrid contribution 0.967 -1.437 0.008 1.732 sum -5.190 18.287 4.423 19.517 Atomic orbital electron populations 1.20234 0.83643 1.04716 1.04117 1.24686 0.97141 0.82708 1.04283 1.74488 0.96120 1.23683 1.19891 1.74040 1.12327 1.08054 1.18629 1.24716 0.87092 0.92591 1.05119 1.46008 1.06995 1.08506 1.54500 1.21755 0.97659 0.75183 1.05321 1.21652 0.96261 0.93413 1.03261 0.87263 1.19930 0.84566 0.86738 0.78163 1.90738 1.24300 1.81886 1.44714 1.46483 1.17669 1.07816 1.64993 1.20099 1.00605 0.77127 0.96323 0.90632 1.21253 1.01348 0.95939 0.96452 1.21974 0.99178 0.96553 1.00278 1.21004 1.00169 0.90965 0.82648 1.43669 1.21566 1.53940 1.11918 1.19191 1.00697 0.99854 1.19239 0.91751 1.25042 0.98818 0.95052 1.00387 1.70076 1.35034 1.05254 1.44217 0.86332 0.85283 0.77202 0.78283 1.21517 1.21799 1.20428 1.20559 0.92259 0.87500 0.96339 1.21863 1.01851 1.01073 0.94744 1.21779 0.96853 0.96399 1.00687 1.20243 0.91213 0.90931 1.04660 0.89544 0.88613 0.90205 0.87929 0.87851 0.76892 0.89988 0.93160 0.93374 0.92492 0.95608 0.90937 0.93658 0.94827 0.93270 0.92991 0.91877 0.90047 0.88716 0.87607 0.88312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.42 10.29 36.01 0.37 -0.05 16 2 C 0.18 1.88 8.07 -155.45 -1.25 0.63 16 3 N -0.30 -4.13 12.23 32.70 0.40 -3.73 16 4 N -0.29 -4.01 12.21 32.76 0.40 -3.61 16 5 C 0.17 1.82 7.75 -155.30 -1.20 0.61 16 6 N -0.47 -4.52 3.11 -110.87 -0.35 -4.86 16 7 C 0.12 0.99 5.46 -4.01 -0.02 0.97 16 8 C -0.12 -0.91 2.54 -91.49 -0.23 -1.14 16 9 H 0.11 0.65 8.12 -51.93 -0.42 0.23 16 10 C 0.52 5.60 7.00 -10.99 -0.08 5.52 16 11 O -0.54 -7.82 15.32 5.56 0.09 -7.73 16 12 N -0.72 -7.69 4.71 -56.82 -0.27 -7.96 16 13 C 0.16 2.31 1.95 -70.99 -0.14 2.17 16 14 H 0.08 1.22 6.65 -51.93 -0.35 0.88 16 15 C -0.11 -1.66 5.00 -28.02 -0.14 -1.80 16 16 C -0.14 -2.38 5.71 -27.30 -0.16 -2.53 16 17 C 0.18 3.91 4.67 -2.95 -0.01 3.90 16 18 N -0.59 -13.55 2.27 -172.09 -0.39 -13.94 16 19 C -0.26 -6.66 9.42 -15.06 -0.14 -6.80 16 20 H 0.06 1.64 7.88 -52.48 -0.41 1.23 16 21 C 0.01 0.16 4.83 -17.43 -0.08 0.07 16 22 N -0.90 -25.08 11.13 55.49 0.62 -24.46 16 23 Si 0.90 20.79 29.59 -169.99 -5.03 15.76 16 24 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 25 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 26 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 27 C 0.16 3.21 5.66 -4.08 -0.02 3.19 16 28 C -0.15 -2.52 5.19 -28.59 -0.15 -2.67 16 29 C -0.12 -0.74 5.23 -26.33 -0.14 -0.88 16 30 C -0.03 -0.21 6.34 -27.55 -0.17 -0.38 16 31 H 0.09 0.43 8.14 -51.93 -0.42 0.00 16 32 H 0.10 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.08 0.39 8.04 -51.93 -0.42 -0.03 16 34 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 35 H 0.10 0.89 7.79 -51.93 -0.40 0.49 16 36 H 0.40 3.20 7.95 -40.82 -0.32 2.87 16 37 H 0.08 1.40 7.48 -51.93 -0.39 1.01 16 38 H 0.05 0.63 8.05 -51.93 -0.42 0.21 16 39 H 0.05 0.79 7.31 -51.93 -0.38 0.41 16 40 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 41 H 0.03 0.63 8.03 -51.93 -0.42 0.21 16 42 H 0.07 1.79 6.42 -51.93 -0.33 1.46 16 43 H 0.25 6.86 8.31 -40.82 -0.34 6.52 16 44 H 0.03 0.65 8.06 -51.93 -0.42 0.23 16 45 H 0.05 1.01 7.99 -51.93 -0.41 0.59 16 46 H 0.05 0.84 7.95 -51.93 -0.41 0.43 16 47 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 48 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 49 H 0.09 0.46 7.33 -51.93 -0.38 0.08 16 50 H 0.11 0.62 8.14 -51.93 -0.42 0.20 16 51 H 0.10 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -33.06 395.48 -10.55 -43.61 By element: Atomic # 1 Polarization: 8.56 SS G_CDS: -8.41 Total: 0.15 kcal Atomic # 6 Polarization: 4.38 SS G_CDS: -3.58 Total: 0.80 kcal Atomic # 7 Polarization: -58.97 SS G_CDS: 0.41 Total: -58.55 kcal Atomic # 8 Polarization: -7.82 SS G_CDS: 0.09 Total: -7.73 kcal Atomic # 14 Polarization: 20.79 SS G_CDS: -5.03 Total: 15.76 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -33.06 -10.55 -43.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052956802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.694 kcal (2) G-P(sol) polarization free energy of solvation -33.060 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.612 kcal (6) G-S(sol) free energy of system = (1) + (5) 54.082 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds