Wall clock time and date at job start Wed Apr 1 2020 05:48:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.30839 * 126.46138 * 2 1 4 4 N 1.28910 * 109.73605 * 180.02562 * 3 2 1 5 5 C 1.29829 * 109.48130 * 0.02562 * 4 3 2 6 6 N 1.34692 * 126.46403 * 180.02562 * 2 1 3 7 7 C 1.46253 * 128.85124 * 359.82715 * 6 2 1 8 8 C 1.53317 * 108.85940 * 197.00332 * 7 6 2 9 9 H 1.09005 * 109.45005 * 69.81015 * 8 7 6 10 10 C 1.50695 * 109.45688 * 189.75065 * 8 7 6 11 11 O 1.21282 * 119.99726 * 0.02562 * 10 8 7 12 12 N 1.34774 * 120.00232 * 179.97438 * 10 8 7 13 13 C 1.46503 * 120.00353 * 179.97438 * 12 10 8 14 14 H 1.09004 * 108.44357 * 327.30824 * 13 12 10 15 15 C 1.52562 * 108.51198 * 209.76933 * 13 12 10 16 16 C 1.50882 * 109.35908 * 153.73407 * 15 13 12 17 17 C 1.53941 * 110.09712 * 91.88342 * 16 15 13 18 18 N 1.47606 * 112.14261 * 319.43736 * 17 16 15 19 19 C 1.36933 * 118.64374 * 137.84470 * 18 17 16 20 20 H 1.08005 * 119.99789 * 207.18593 * 19 18 17 21 21 C 1.38810 * 120.00181 * 27.19060 * 19 18 17 22 22 N 1.31613 * 119.99896 * 16.73113 * 21 19 18 23 23 Si 1.86806 * 119.99967 * 196.73484 * 21 19 18 24 24 H 1.48500 * 109.47068 * 93.99517 * 23 21 19 25 25 H 1.48504 * 109.47016 * 213.99235 * 23 21 19 26 26 H 1.48495 * 109.46890 * 333.99301 * 23 21 19 27 27 C 1.44583 * 122.71159 * 317.86752 * 18 17 16 28 28 C 1.47084 * 108.51064 * 84.99960 * 13 12 10 29 29 C 1.53236 * 109.53280 * 309.92259 * 8 7 6 30 30 C 1.50807 * 128.52454 * 179.83395 * 5 4 3 31 31 H 1.08998 * 109.47739 * 269.97580 * 1 2 3 32 32 H 1.08995 * 109.46973 * 29.98023 * 1 2 3 33 33 H 1.09007 * 109.46731 * 149.97321 * 1 2 3 34 34 H 1.08994 * 109.59598 * 316.85831 * 7 6 2 35 35 H 1.09003 * 109.59054 * 77.15758 * 7 6 2 36 36 H 0.97006 * 119.99988 * 0.02562 * 12 10 8 37 37 H 1.09003 * 109.48950 * 273.69865 * 15 13 12 38 38 H 1.08998 * 109.49414 * 33.76893 * 15 13 12 39 39 H 1.09003 * 109.36250 * 331.69238 * 16 15 13 40 40 H 1.09003 * 109.26396 * 212.00956 * 16 15 13 41 41 H 1.09006 * 108.94921 * 198.75368 * 17 16 15 42 42 H 1.09002 * 108.94799 * 80.12186 * 17 16 15 43 43 H 0.97009 * 120.00122 * 180.02562 * 22 21 19 44 44 H 1.08996 * 109.44849 * 330.68601 * 27 18 17 45 45 H 1.08999 * 109.44893 * 210.76586 * 27 18 17 46 46 H 1.09000 * 109.33290 * 304.31772 * 28 13 12 47 47 H 1.09005 * 109.33153 * 63.79983 * 28 13 12 48 48 H 1.09004 * 109.40907 * 309.26931 * 29 8 7 49 49 H 1.08992 * 109.46699 * 189.24000 * 29 8 7 50 50 H 1.09000 * 109.73034 * 315.57776 * 30 5 4 51 51 H 1.08997 * 109.72731 * 76.21442 * 30 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2846 1.0523 0.0000 4 7 3.5191 0.6813 -0.0005 5 6 3.5816 -0.6155 -0.0015 6 7 2.3075 -1.0832 -0.0005 7 6 1.9368 -2.4980 0.0023 8 6 3.1543 -3.3285 0.4248 9 1 3.3631 -3.1554 1.4805 10 6 2.8654 -4.7909 0.2038 11 8 1.7936 -5.1360 -0.2468 12 7 3.7985 -5.7153 0.5061 13 6 3.5175 -7.1371 0.2918 14 1 2.4542 -7.3078 0.4607 15 6 4.3038 -7.9464 1.3186 16 6 3.5977 -9.2557 1.5706 17 6 4.1426 -10.3412 0.6248 18 7 4.3755 -9.8255 -0.7385 19 6 5.5164 -10.2007 -1.3962 20 1 5.9422 -9.5551 -2.1501 21 6 6.1256 -11.4108 -1.0942 22 7 5.4596 -12.3372 -0.4380 23 14 7.8908 -11.7246 -1.6189 24 1 8.8086 -11.3660 -0.5079 25 1 8.0591 -13.1610 -1.9560 26 1 8.2078 -10.8962 -2.8098 27 6 3.4490 -8.9401 -1.4078 28 6 3.8273 -7.4687 -1.1072 29 6 4.3715 -2.9137 -0.4085 30 6 4.8052 -1.4970 -0.0058 31 1 -0.3634 -0.0004 1.0276 32 1 -0.3633 0.8901 -0.5135 33 1 -0.3633 -0.8898 -0.5143 34 1 1.1211 -2.6607 0.7067 35 1 1.6209 -2.7950 -0.9978 36 1 4.6559 -5.4393 0.8662 37 1 5.3063 -8.1413 0.9376 38 1 4.3714 -7.3845 2.2502 39 1 2.5289 -9.1290 1.3977 40 1 3.7631 -9.5605 2.6040 41 1 3.4252 -11.1604 0.5755 42 1 5.0830 -10.7200 1.0253 43 1 5.8854 -13.1828 -0.2266 44 1 2.4380 -9.1351 -1.0502 45 1 3.4932 -9.1139 -2.4829 46 1 3.2641 -6.8093 -1.7676 47 1 4.8936 -7.3271 -1.2840 48 1 4.1086 -2.9287 -1.4662 49 1 5.1904 -3.6097 -0.2268 50 1 5.5298 -1.1171 -0.7260 51 1 5.2497 -1.5142 0.9893 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052956802.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:48:15 Heat of formation + Delta-G solvation = 34.623117 kcal Electronic energy + Delta-G solvation = -31327.055036 eV Core-core repulsion = 27262.002379 eV Total energy + Delta-G solvation = -4065.052658 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -44.37422 -41.40458 -39.45510 -37.78969 -36.38968 -35.17781 -34.11281 -33.30216 -32.75676 -31.67091 -31.15572 -28.33836 -27.93340 -26.32881 -25.56858 -24.78187 -24.16649 -22.44675 -21.70878 -21.51648 -21.01975 -20.39274 -18.58393 -18.56724 -17.65789 -17.31204 -17.23674 -16.90181 -16.36911 -15.88779 -15.78932 -15.51671 -15.26263 -15.19666 -14.98969 -14.80977 -14.78217 -14.22221 -14.10430 -13.92638 -13.57692 -13.50407 -13.25327 -13.16709 -13.14398 -12.98759 -12.71756 -12.63325 -12.39375 -12.25306 -12.11418 -12.04263 -12.01806 -11.72289 -11.49932 -11.48291 -11.37464 -11.31787 -11.14631 -10.81436 -10.43376 -10.06477 -10.03455 -8.62787 -7.83046 -5.29494 0.78723 1.36086 1.48094 1.50179 1.56286 1.58335 1.76478 2.17494 2.53964 3.06244 3.26079 3.30380 3.39780 3.54711 3.58116 3.68974 3.80222 3.91790 4.01398 4.13640 4.15687 4.25810 4.33152 4.35976 4.47711 4.48112 4.56447 4.61777 4.66653 4.70900 4.81019 4.82962 4.84353 4.95847 4.97813 5.00981 5.02084 5.05009 5.15965 5.18523 5.22778 5.27182 5.36538 5.53175 5.57962 5.61678 5.71658 5.83505 5.87371 6.43719 6.57004 7.21693 7.23464 7.66674 7.97592 8.37180 9.22027 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022101 B = 0.002203 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1266.608591 B =12705.934360 C =13342.448610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.179 3.821 3 N -0.347 5.347 4 N -0.337 5.337 5 C 0.174 3.826 6 N -0.469 5.469 7 C 0.124 3.876 8 C -0.111 4.111 9 H 0.134 0.866 10 C 0.526 3.474 11 O -0.577 6.577 12 N -0.709 5.709 13 C 0.169 3.831 14 H 0.063 0.937 15 C -0.102 4.102 16 C -0.129 4.129 17 C 0.186 3.814 18 N -0.601 5.601 19 C -0.259 4.259 20 H 0.065 0.935 21 C -0.047 4.047 22 N -0.935 5.935 23 Si 0.960 3.040 24 H -0.284 1.284 25 H -0.301 1.301 26 H -0.270 1.270 27 C 0.157 3.843 28 C -0.134 4.134 29 C -0.113 4.113 30 C -0.027 4.027 31 H 0.102 0.898 32 H 0.100 0.900 33 H 0.095 0.905 34 H 0.114 0.886 35 H 0.095 0.905 36 H 0.415 0.585 37 H 0.061 0.939 38 H 0.086 0.914 39 H 0.054 0.946 40 H 0.075 0.925 41 H -0.011 1.011 42 H 0.042 0.958 43 H 0.248 0.752 44 H 0.034 0.966 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.057 0.943 48 H 0.070 0.930 49 H 0.116 0.884 50 H 0.114 0.886 51 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.258 20.228 5.689 21.661 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.089 4.089 3 N -0.187 5.187 4 N -0.175 5.175 5 C -0.095 4.095 6 N -0.160 5.160 7 C 0.001 3.999 8 C -0.132 4.132 9 H 0.152 0.848 10 C 0.312 3.688 11 O -0.456 6.456 12 N -0.360 5.360 13 C 0.065 3.935 14 H 0.081 0.919 15 C -0.140 4.140 16 C -0.169 4.169 17 C 0.061 3.939 18 N -0.323 5.323 19 C -0.390 4.390 20 H 0.083 0.917 21 C -0.243 4.243 22 N -0.582 5.582 23 Si 0.789 3.211 24 H -0.211 1.211 25 H -0.228 1.228 26 H -0.194 1.194 27 C 0.030 3.970 28 C -0.175 4.175 29 C -0.151 4.151 30 C -0.066 4.066 31 H 0.121 0.879 32 H 0.118 0.882 33 H 0.113 0.887 34 H 0.132 0.868 35 H 0.114 0.886 36 H 0.252 0.748 37 H 0.080 0.920 38 H 0.104 0.896 39 H 0.072 0.928 40 H 0.094 0.906 41 H 0.007 0.993 42 H 0.060 0.940 43 H 0.057 0.943 44 H 0.053 0.947 45 H 0.054 0.946 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.089 0.911 49 H 0.135 0.865 50 H 0.132 0.868 51 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -5.585 21.267 5.419 22.646 hybrid contribution 0.697 -1.911 -0.366 2.067 sum -4.888 19.356 5.053 20.593 Atomic orbital electron populations 1.20424 0.81029 1.05695 1.05453 1.25378 0.98591 0.82348 1.02591 1.74389 0.96718 1.25525 1.22073 1.73935 1.12798 1.09986 1.20786 1.25406 0.88491 0.92252 1.03347 1.46115 1.06694 1.08894 1.54267 1.21828 0.98418 0.74294 1.05311 1.21570 0.96317 0.90446 1.04913 0.84806 1.20385 0.83672 0.87851 0.76861 1.90737 1.25952 1.82668 1.46283 1.46192 1.18655 1.06165 1.64991 1.19704 0.99659 0.79323 0.94781 0.91923 1.21136 0.99638 0.95126 0.98104 1.21821 0.99406 0.95974 0.99659 1.20791 0.97789 0.91967 0.83331 1.43849 1.21587 1.54345 1.12513 1.19464 1.01279 0.99510 1.18743 0.91711 1.25733 1.02192 0.95085 1.01265 1.70235 1.36339 1.05520 1.46061 0.85359 0.81170 0.76369 0.78175 1.21078 1.22770 1.19442 1.20676 0.91832 0.89208 0.95316 1.21579 1.01328 0.98092 0.96469 1.21774 0.96944 0.96583 0.99798 1.20436 0.89783 0.90107 1.06271 0.87910 0.88172 0.88654 0.86822 0.88636 0.74830 0.91988 0.89556 0.92768 0.90619 0.99265 0.93991 0.94306 0.94748 0.94647 0.92567 0.92400 0.91128 0.86535 0.86799 0.86039 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.73 10.29 71.24 0.73 0.01 16 2 C 0.18 3.58 8.07 138.14 1.11 4.69 16 3 N -0.35 -9.51 12.23 -50.46 -0.62 -10.13 16 4 N -0.34 -9.14 12.21 -50.27 -0.61 -9.76 16 5 C 0.17 3.37 7.75 138.14 1.07 4.44 16 6 N -0.47 -8.17 3.11 -504.67 -1.57 -9.74 16 7 C 0.12 1.66 5.46 86.53 0.47 2.13 16 8 C -0.11 -1.22 2.54 -11.36 -0.03 -1.24 16 9 H 0.13 0.92 8.12 -2.38 -0.02 0.90 16 10 C 0.53 9.54 7.00 87.66 0.61 10.16 16 11 O -0.58 -15.39 15.32 -3.04 -0.05 -15.43 16 12 N -0.71 -12.48 4.71 -452.07 -2.13 -14.61 16 13 C 0.17 4.42 1.95 43.01 0.08 4.50 16 14 H 0.06 1.87 6.65 -2.38 -0.02 1.86 16 15 C -0.10 -2.74 5.00 29.76 0.15 -2.59 16 16 C -0.13 -4.19 5.71 30.22 0.17 -4.02 16 17 C 0.19 8.38 4.67 86.49 0.40 8.78 16 18 N -0.60 -27.89 2.27 -698.36 -1.58 -29.47 16 19 C -0.26 -13.39 9.42 84.03 0.79 -12.60 16 20 H 0.07 3.28 7.88 -2.91 -0.02 3.26 16 21 C -0.05 -2.53 4.83 84.86 0.41 -2.12 16 22 N -0.94 -53.56 11.13 21.65 0.24 -53.32 16 23 Si 0.96 43.08 29.59 68.60 2.03 45.11 16 24 H -0.28 -12.45 7.11 99.48 0.71 -11.74 16 25 H -0.30 -13.84 7.11 99.48 0.71 -13.13 16 26 H -0.27 -11.55 7.11 99.48 0.71 -10.85 16 27 C 0.16 6.21 5.66 87.37 0.49 6.71 16 28 C -0.13 -4.16 5.19 29.39 0.15 -4.01 16 29 C -0.11 -1.00 5.23 30.85 0.16 -0.84 16 30 C -0.03 -0.27 6.34 30.06 0.19 -0.08 16 31 H 0.10 0.79 8.14 -2.39 -0.02 0.77 16 32 H 0.10 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.09 0.73 8.04 -2.38 -0.02 0.71 16 34 H 0.11 1.29 8.14 -2.39 -0.02 1.27 16 35 H 0.10 1.47 7.79 -2.39 -0.02 1.45 16 36 H 0.41 4.67 7.95 -92.70 -0.74 3.93 16 37 H 0.06 1.98 7.48 -2.39 -0.02 1.96 16 38 H 0.09 1.75 8.05 -2.39 -0.02 1.73 16 39 H 0.05 1.70 7.31 -2.39 -0.02 1.69 16 40 H 0.08 2.17 8.14 -2.39 -0.02 2.16 16 41 H -0.01 -0.55 8.03 -2.38 -0.02 -0.57 16 42 H 0.04 2.12 6.42 -2.39 -0.02 2.11 16 43 H 0.25 13.84 8.31 -92.70 -0.77 13.07 16 44 H 0.03 1.34 8.06 -2.39 -0.02 1.32 16 45 H 0.04 1.46 7.99 -2.39 -0.02 1.44 16 46 H 0.06 1.72 7.95 -2.39 -0.02 1.70 16 47 H 0.06 1.88 8.14 -2.38 -0.02 1.86 16 48 H 0.07 0.82 8.12 -2.39 -0.02 0.80 16 49 H 0.12 0.58 7.33 -2.39 -0.02 0.56 16 50 H 0.11 1.02 8.14 -2.39 -0.02 1.01 16 51 H 0.12 0.73 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -75.35 395.48 2.89 -72.46 By element: Atomic # 1 Polarization: 10.76 SS G_CDS: 0.20 Total: 10.96 kcal Atomic # 6 Polarization: 6.95 SS G_CDS: 6.98 Total: 13.93 kcal Atomic # 7 Polarization: -120.75 SS G_CDS: -6.27 Total: -127.02 kcal Atomic # 8 Polarization: -15.39 SS G_CDS: -0.05 Total: -15.43 kcal Atomic # 14 Polarization: 43.08 SS G_CDS: 2.03 Total: 45.11 kcal Total: -75.35 2.89 -72.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052956802.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.083 kcal (2) G-P(sol) polarization free energy of solvation -75.351 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.732 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.891 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds