Wall clock time and date at job start Wed Apr 1 2020 05:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33310 * 126.81653 * 2 1 4 4 N 1.28517 * 109.43955 * 179.82265 * 3 2 1 5 5 N 1.28720 * 110.63502 * 0.45340 * 4 3 2 6 6 H 0.96999 * 126.03224 * 179.72650 * 5 4 3 7 7 C 1.37006 * 126.80739 * 180.30691 * 2 1 3 8 8 C 1.47235 * 127.19290 * 359.97438 * 7 2 1 9 9 O 1.21614 * 119.99586 * 257.40911 * 8 7 2 10 10 N 1.34781 * 120.00136 * 77.40351 * 8 7 2 11 11 C 1.46924 * 120.63154 * 4.70196 * 10 8 7 12 12 C 1.53625 * 108.54227 * 126.36327 * 11 10 8 13 13 C 1.53035 * 109.24026 * 54.85984 * 12 11 10 14 14 C 1.53047 * 109.53634 * 298.50709 * 13 12 11 15 15 H 1.08996 * 109.52281 * 301.40027 * 14 13 12 16 16 C 1.52999 * 109.49579 * 181.31899 * 14 13 12 17 17 H 1.09001 * 109.49908 * 300.16103 * 16 14 13 18 18 C 1.53041 * 109.50026 * 60.22455 * 16 14 13 19 19 C 1.53037 * 109.54000 * 181.31484 * 18 16 14 20 20 C 1.53200 * 109.31461 * 298.63674 * 19 18 16 21 21 N 1.46930 * 108.77129 * 54.63546 * 20 19 18 22 22 C 1.36935 * 120.62971 * 126.39179 * 21 20 19 23 23 H 1.07996 * 120.00112 * 213.51761 * 22 21 20 24 24 C 1.38811 * 120.00003 * 33.52339 * 22 21 20 25 25 N 1.31622 * 120.00216 * 12.83530 * 24 22 21 26 26 Si 1.86798 * 119.99880 * 192.83337 * 24 22 21 27 27 H 1.48496 * 109.47329 * 60.00212 * 26 24 22 28 28 H 1.48504 * 109.46906 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47409 * 299.99684 * 26 24 22 30 30 C 1.46938 * 118.76342 * 306.40864 * 21 20 19 31 31 C 1.46922 * 120.62938 * 184.97860 * 10 8 7 32 32 H 1.08995 * 109.46915 * 269.69410 * 1 2 3 33 33 H 1.09003 * 109.46378 * 29.69010 * 1 2 3 34 34 H 1.08991 * 109.47343 * 149.68570 * 1 2 3 35 35 H 1.08997 * 109.58479 * 246.20201 * 11 10 8 36 36 H 1.09003 * 109.58447 * 6.62400 * 11 10 8 37 37 H 1.09001 * 109.63557 * 294.86801 * 12 11 10 38 38 H 1.09000 * 109.45433 * 174.73989 * 12 11 10 39 39 H 1.09000 * 109.45792 * 178.49012 * 13 12 11 40 40 H 1.08996 * 109.46275 * 58.52664 * 13 12 11 41 41 H 1.08991 * 109.46119 * 301.33721 * 18 16 14 42 42 H 1.09004 * 109.45516 * 61.31187 * 18 16 14 43 43 H 1.08993 * 109.49607 * 58.58754 * 19 18 16 44 44 H 1.08995 * 109.49889 * 178.65604 * 19 18 16 45 45 H 1.08995 * 109.58525 * 174.41745 * 20 19 18 46 46 H 1.08994 * 109.58519 * 294.70671 * 20 19 18 47 47 H 0.97000 * 120.00061 * 180.02562 * 25 24 22 48 48 H 1.08997 * 109.56421 * 293.78579 * 30 21 20 49 49 H 1.08997 * 109.61118 * 173.35952 * 30 21 20 50 50 H 1.09008 * 109.58526 * 353.37605 * 31 10 8 51 51 H 1.08998 * 109.58823 * 113.65481 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0672 0.0000 4 7 3.5325 0.6834 0.0038 5 7 3.6057 -0.6017 -0.0032 6 1 4.4212 -1.1268 -0.0060 7 6 2.3279 -1.0969 -0.0059 8 6 1.9221 -2.5122 -0.0129 9 8 1.9756 -3.1652 1.0117 10 7 1.4912 -3.0841 -1.1548 11 6 1.5176 -2.3396 -2.4212 12 6 2.2800 -3.1733 -3.4622 13 6 1.6422 -4.5607 -3.5625 14 6 1.7439 -5.2697 -2.2099 15 1 2.7912 -5.3502 -1.9187 16 6 1.1354 -6.6692 -2.3200 17 1 0.0884 -6.5888 -2.6123 18 6 1.8989 -7.4769 -3.3721 19 6 1.2704 -8.8658 -3.5063 20 6 1.3723 -9.5999 -2.1655 21 7 0.7675 -8.7623 -1.1208 22 6 -0.2139 -9.2621 -0.3070 23 1 -1.0021 -8.6151 0.0485 24 6 -0.1955 -10.6004 0.0611 25 7 0.8806 -11.3273 -0.1534 26 14 -1.6981 -11.3697 0.8609 27 1 -2.8571 -11.2674 -0.0618 28 1 -1.4244 -12.7992 1.1560 29 1 -2.0070 -10.6543 2.1250 30 6 1.2351 -7.3780 -0.9655 31 6 0.9806 -4.4617 -1.1558 32 1 -0.3633 -0.0055 1.0276 33 1 -0.3632 0.8928 -0.5090 34 1 -0.3633 -0.8871 -0.5187 35 1 0.4977 -2.1657 -2.7641 36 1 2.0235 -1.3854 -2.2736 37 1 3.3224 -3.2731 -3.1594 38 1 2.2286 -2.6783 -4.4320 39 1 2.1637 -5.1463 -4.3195 40 1 0.5934 -4.4590 -3.8411 41 1 1.8497 -6.9619 -4.3314 42 1 2.9404 -7.5778 -3.0669 43 1 0.2221 -8.7652 -3.7872 44 1 1.7997 -9.4321 -4.2727 45 1 0.8396 -10.5488 -2.2270 46 1 2.4201 -9.7838 -1.9283 47 1 0.8933 -12.2626 0.1035 48 1 2.2717 -7.3784 -0.6287 49 1 0.6119 -6.8610 -0.2359 50 1 1.1321 -4.9082 -0.1729 51 1 -0.0827 -4.4572 -1.3950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053037350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:37 Heat of formation + Delta-G solvation = 65.182809 kcal Electronic energy + Delta-G solvation = -31795.992390 eV Core-core repulsion = 27732.264900 eV Total energy + Delta-G solvation = -4063.727490 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.71269 -40.45228 -38.51365 -36.90136 -34.41074 -34.15026 -32.87534 -32.38365 -31.77452 -30.38631 -28.70751 -28.07001 -26.22675 -25.13188 -24.22993 -23.54374 -22.63273 -21.86257 -21.44113 -20.43493 -19.77903 -19.10566 -18.38208 -17.56371 -16.73209 -16.63570 -16.07356 -15.41676 -14.85791 -14.73852 -14.72914 -14.22902 -14.03221 -13.93388 -13.62508 -13.50297 -13.29593 -13.17552 -13.12675 -12.99349 -12.64558 -12.48681 -12.33392 -12.20577 -11.72970 -11.50560 -11.44606 -11.18984 -11.01577 -10.93514 -10.89274 -10.84961 -10.59822 -10.36637 -10.31430 -10.18758 -10.14921 -9.89072 -9.55057 -9.52562 -9.31980 -8.91328 -8.46117 -6.56692 -5.77842 -3.26628 0.84032 1.69330 1.98157 2.33408 2.76127 3.38594 3.43833 3.44769 3.83725 4.04744 4.37363 4.41769 4.50575 4.60926 4.69966 4.82097 4.83770 5.03058 5.11287 5.22899 5.26484 5.32222 5.36793 5.42772 5.43421 5.52976 5.57115 5.59880 5.65040 5.75429 5.78653 5.80417 5.86159 5.98906 6.05397 6.13414 6.21156 6.28049 6.37503 6.39763 6.44172 6.63165 6.69766 6.82641 6.88247 6.94651 7.01993 7.38988 7.64922 7.66372 7.80832 7.94086 8.50019 9.23875 9.85274 10.45288 11.30447 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.002649 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.135792 B =10565.722246 C =11575.524371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.026 3.974 3 N -0.262 5.262 4 N -0.057 5.057 5 N -0.368 5.368 6 H 0.454 0.546 7 C -0.047 4.047 8 C 0.588 3.412 9 O -0.510 6.510 10 N -0.592 5.592 11 C 0.106 3.894 12 C -0.133 4.133 13 C -0.117 4.117 14 C -0.091 4.091 15 H 0.072 0.928 16 C -0.096 4.096 17 H 0.069 0.931 18 C -0.101 4.101 19 C -0.143 4.143 20 C 0.173 3.827 21 N -0.590 5.590 22 C -0.256 4.256 23 H 0.062 0.938 24 C 0.007 3.993 25 N -0.902 5.902 26 Si 0.902 3.098 27 H -0.283 1.283 28 H -0.291 1.291 29 H -0.282 1.282 30 C 0.151 3.849 31 C 0.114 3.886 32 H 0.084 0.916 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.077 0.923 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.075 0.925 39 H 0.072 0.928 40 H 0.066 0.934 41 H 0.046 0.954 42 H 0.051 0.949 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.078 0.922 46 H 0.017 0.983 47 H 0.254 0.746 48 H 0.015 0.985 49 H 0.053 0.947 50 H 0.103 0.897 51 H 0.076 0.924 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.765 20.407 -8.349 22.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.113 4.113 3 N -0.130 5.130 4 N -0.037 5.037 5 N -0.092 5.092 6 H 0.301 0.699 7 C -0.183 4.183 8 C 0.371 3.629 9 O -0.383 6.383 10 N -0.324 5.324 11 C -0.017 4.017 12 C -0.171 4.171 13 C -0.155 4.155 14 C -0.111 4.111 15 H 0.090 0.910 16 C -0.116 4.116 17 H 0.087 0.913 18 C -0.139 4.139 19 C -0.182 4.182 20 C 0.048 3.952 21 N -0.312 5.312 22 C -0.386 4.386 23 H 0.080 0.920 24 C -0.192 4.192 25 N -0.546 5.546 26 Si 0.732 3.268 27 H -0.210 1.210 28 H -0.216 1.216 29 H -0.208 1.208 30 C 0.025 3.975 31 C -0.007 4.007 32 H 0.102 0.898 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.094 0.906 37 H 0.083 0.917 38 H 0.094 0.906 39 H 0.091 0.909 40 H 0.084 0.916 41 H 0.065 0.935 42 H 0.070 0.930 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.097 0.903 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.033 0.967 49 H 0.071 0.929 50 H 0.121 0.879 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges 3.515 21.228 -7.711 22.857 hybrid contribution -0.557 -1.754 0.384 1.880 sum 2.958 19.474 -7.327 21.016 Atomic orbital electron populations 1.20219 0.85213 1.03978 1.03944 1.22222 0.98333 0.87040 1.03732 1.74853 0.95231 1.25932 1.16946 1.78204 1.15789 0.91936 1.17783 1.45387 1.08501 1.06708 1.48640 0.69928 1.21898 0.85854 0.96551 1.14031 1.16866 0.78610 0.83356 0.84070 1.90924 1.53181 1.62273 1.31940 1.48084 1.62177 1.15188 1.06997 1.21906 1.01611 0.94670 0.83509 1.22000 0.99845 0.96760 0.98527 1.21660 1.01284 0.94653 0.97865 1.21524 1.00362 0.95155 0.94064 0.90964 1.21668 0.99295 0.91648 0.99023 0.91285 1.21449 0.99001 0.96269 0.97146 1.22189 0.99717 0.95938 1.00385 1.20698 0.96361 0.94210 0.83976 1.43950 1.43499 1.07872 1.35903 1.19080 1.01419 0.93869 1.24226 0.92045 1.25194 0.96747 0.98449 0.98793 1.69997 1.26278 1.07661 1.50645 0.86387 0.82716 0.78233 0.79492 1.20964 1.21640 1.20778 1.20971 0.96877 0.86957 0.92710 1.21972 0.97783 0.78633 1.02320 0.89760 0.89602 0.90371 0.90436 0.90554 0.91657 0.90610 0.90895 0.91569 0.93535 0.92985 0.92851 0.93519 0.90348 0.96518 0.93590 0.96670 0.92861 0.87890 0.90583 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.56 10.28 36.01 0.37 -0.19 16 2 C 0.03 0.27 7.11 -82.39 -0.59 -0.32 16 3 N -0.26 -3.06 12.35 33.51 0.41 -2.65 16 4 N -0.06 -0.62 13.35 60.35 0.81 0.19 16 5 N -0.37 -3.29 7.07 33.31 0.24 -3.05 16 6 H 0.45 2.66 8.96 -190.33 -1.71 0.95 16 7 C -0.05 -0.48 5.07 -82.33 -0.42 -0.90 16 8 C 0.59 7.00 7.32 -12.60 -0.09 6.90 16 9 O -0.51 -8.17 16.52 5.26 0.09 -8.09 16 10 N -0.59 -5.99 2.97 -173.84 -0.52 -6.51 16 11 C 0.11 0.78 6.35 -3.49 -0.02 0.76 16 12 C -0.13 -0.97 6.10 -26.39 -0.16 -1.13 16 13 C -0.12 -1.07 4.86 -26.69 -0.13 -1.20 16 14 C -0.09 -1.08 1.92 -90.50 -0.17 -1.26 16 15 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 16 C -0.10 -1.47 1.92 -90.50 -0.17 -1.64 16 17 H 0.07 1.10 8.14 -51.93 -0.42 0.68 16 18 C -0.10 -1.56 4.86 -26.69 -0.13 -1.69 16 19 C -0.14 -2.62 6.08 -26.61 -0.16 -2.78 16 20 C 0.17 4.06 5.25 -3.70 -0.02 4.04 16 21 N -0.59 -14.50 2.97 -172.31 -0.51 -15.01 16 22 C -0.26 -6.97 9.54 -15.06 -0.14 -7.11 16 23 H 0.06 1.64 7.86 -52.49 -0.41 1.23 16 24 C 0.01 0.20 4.98 -17.43 -0.09 0.12 16 25 N -0.90 -26.20 11.35 55.49 0.63 -25.57 16 26 Si 0.90 21.63 29.57 -169.99 -5.03 16.60 16 27 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 28 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 29 H -0.28 -6.70 7.11 56.52 0.40 -6.29 16 30 C 0.15 3.04 5.28 -3.70 -0.02 3.02 16 31 C 0.11 1.35 5.20 -3.71 -0.02 1.33 16 32 H 0.08 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.08 0.52 8.02 -51.93 -0.42 0.11 16 35 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 36 H 0.08 0.54 6.24 -51.93 -0.32 0.22 16 37 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.08 0.44 8.14 -51.93 -0.42 0.01 16 39 H 0.07 0.68 6.34 -51.93 -0.33 0.35 16 40 H 0.07 0.59 8.14 -51.93 -0.42 0.16 16 41 H 0.05 0.60 6.34 -51.93 -0.33 0.27 16 42 H 0.05 0.83 8.14 -51.93 -0.42 0.40 16 43 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 44 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 45 H 0.08 2.07 6.35 -51.93 -0.33 1.74 16 46 H 0.02 0.42 8.14 -51.93 -0.42 -0.01 16 47 H 0.25 7.15 8.31 -40.82 -0.34 6.82 16 48 H 0.02 0.33 8.14 -51.93 -0.42 -0.10 16 49 H 0.05 1.07 6.69 -51.93 -0.35 0.72 16 50 H 0.10 1.51 5.75 -51.92 -0.30 1.21 16 51 H 0.08 0.85 8.14 -51.93 -0.42 0.43 16 LS Contribution 394.44 15.07 5.94 5.94 Total: -1.00 -32.85 394.44 -9.45 -42.30 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -9.55 Total: -2.14 kcal Atomic # 6 Polarization: -0.05 SS G_CDS: -1.97 Total: -2.01 kcal Atomic # 7 Polarization: -53.66 SS G_CDS: 1.06 Total: -52.61 kcal Atomic # 8 Polarization: -8.17 SS G_CDS: 0.09 Total: -8.09 kcal Atomic # 14 Polarization: 21.63 SS G_CDS: -5.03 Total: 16.60 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -32.85 -9.45 -42.30 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053037350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 107.483 kcal (2) G-P(sol) polarization free energy of solvation -32.849 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 74.634 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.300 kcal (6) G-S(sol) free energy of system = (1) + (5) 65.183 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds