Wall clock time and date at job start Wed Apr 1 2020 05:06:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50709 * 1 3 3 N 1.33310 * 126.81653 * 2 1 4 4 N 1.28517 * 109.43955 * 179.82265 * 3 2 1 5 5 N 1.28720 * 110.63502 * 0.45340 * 4 3 2 6 6 H 0.96999 * 126.03224 * 179.72650 * 5 4 3 7 7 C 1.37006 * 126.80739 * 180.30691 * 2 1 3 8 8 C 1.47235 * 127.19290 * 359.97438 * 7 2 1 9 9 O 1.21614 * 119.99586 * 257.40911 * 8 7 2 10 10 N 1.34781 * 120.00136 * 77.40351 * 8 7 2 11 11 C 1.46924 * 120.63154 * 4.70196 * 10 8 7 12 12 C 1.53625 * 108.54227 * 126.36327 * 11 10 8 13 13 C 1.53035 * 109.24026 * 54.85984 * 12 11 10 14 14 C 1.53047 * 109.53634 * 298.50709 * 13 12 11 15 15 H 1.08996 * 109.52281 * 301.40027 * 14 13 12 16 16 C 1.52999 * 109.49579 * 181.31899 * 14 13 12 17 17 H 1.09001 * 109.49908 * 300.16103 * 16 14 13 18 18 C 1.53041 * 109.50026 * 60.22455 * 16 14 13 19 19 C 1.53037 * 109.54000 * 181.31484 * 18 16 14 20 20 C 1.53200 * 109.31461 * 298.63674 * 19 18 16 21 21 N 1.46930 * 108.77129 * 54.63546 * 20 19 18 22 22 C 1.36935 * 120.62971 * 126.39179 * 21 20 19 23 23 H 1.07996 * 120.00112 * 213.51761 * 22 21 20 24 24 C 1.38811 * 120.00003 * 33.52339 * 22 21 20 25 25 N 1.31622 * 120.00216 * 12.83530 * 24 22 21 26 26 Si 1.86798 * 119.99880 * 192.83337 * 24 22 21 27 27 H 1.48496 * 109.47329 * 60.00212 * 26 24 22 28 28 H 1.48504 * 109.46906 * 180.02562 * 26 24 22 29 29 H 1.48501 * 109.47409 * 299.99684 * 26 24 22 30 30 C 1.46938 * 118.76342 * 306.40864 * 21 20 19 31 31 C 1.46922 * 120.62938 * 184.97860 * 10 8 7 32 32 H 1.08995 * 109.46915 * 269.69410 * 1 2 3 33 33 H 1.09003 * 109.46378 * 29.69010 * 1 2 3 34 34 H 1.08991 * 109.47343 * 149.68570 * 1 2 3 35 35 H 1.08997 * 109.58479 * 246.20201 * 11 10 8 36 36 H 1.09003 * 109.58447 * 6.62400 * 11 10 8 37 37 H 1.09001 * 109.63557 * 294.86801 * 12 11 10 38 38 H 1.09000 * 109.45433 * 174.73989 * 12 11 10 39 39 H 1.09000 * 109.45792 * 178.49012 * 13 12 11 40 40 H 1.08996 * 109.46275 * 58.52664 * 13 12 11 41 41 H 1.08991 * 109.46119 * 301.33721 * 18 16 14 42 42 H 1.09004 * 109.45516 * 61.31187 * 18 16 14 43 43 H 1.08993 * 109.49607 * 58.58754 * 19 18 16 44 44 H 1.08995 * 109.49889 * 178.65604 * 19 18 16 45 45 H 1.08995 * 109.58525 * 174.41745 * 20 19 18 46 46 H 1.08994 * 109.58519 * 294.70671 * 20 19 18 47 47 H 0.97000 * 120.00061 * 180.02562 * 25 24 22 48 48 H 1.08997 * 109.56421 * 293.78579 * 30 21 20 49 49 H 1.08997 * 109.61118 * 173.35952 * 30 21 20 50 50 H 1.09008 * 109.58526 * 353.37605 * 31 10 8 51 51 H 1.08998 * 109.58823 * 113.65481 * 31 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.3060 1.0672 0.0000 4 7 3.5325 0.6834 0.0038 5 7 3.6057 -0.6017 -0.0032 6 1 4.4212 -1.1268 -0.0060 7 6 2.3279 -1.0969 -0.0059 8 6 1.9221 -2.5122 -0.0129 9 8 1.9756 -3.1652 1.0117 10 7 1.4912 -3.0841 -1.1548 11 6 1.5176 -2.3396 -2.4212 12 6 2.2800 -3.1733 -3.4622 13 6 1.6422 -4.5607 -3.5625 14 6 1.7439 -5.2697 -2.2099 15 1 2.7912 -5.3502 -1.9187 16 6 1.1354 -6.6692 -2.3200 17 1 0.0884 -6.5888 -2.6123 18 6 1.8989 -7.4769 -3.3721 19 6 1.2704 -8.8658 -3.5063 20 6 1.3723 -9.5999 -2.1655 21 7 0.7675 -8.7623 -1.1208 22 6 -0.2139 -9.2621 -0.3070 23 1 -1.0021 -8.6151 0.0485 24 6 -0.1955 -10.6004 0.0611 25 7 0.8806 -11.3273 -0.1534 26 14 -1.6981 -11.3697 0.8609 27 1 -2.8571 -11.2674 -0.0618 28 1 -1.4244 -12.7992 1.1560 29 1 -2.0070 -10.6543 2.1250 30 6 1.2351 -7.3780 -0.9655 31 6 0.9806 -4.4617 -1.1558 32 1 -0.3633 -0.0055 1.0276 33 1 -0.3632 0.8928 -0.5090 34 1 -0.3633 -0.8871 -0.5187 35 1 0.4977 -2.1657 -2.7641 36 1 2.0235 -1.3854 -2.2736 37 1 3.3224 -3.2731 -3.1594 38 1 2.2286 -2.6783 -4.4320 39 1 2.1637 -5.1463 -4.3195 40 1 0.5934 -4.4590 -3.8411 41 1 1.8497 -6.9619 -4.3314 42 1 2.9404 -7.5778 -3.0669 43 1 0.2221 -8.7652 -3.7872 44 1 1.7997 -9.4321 -4.2727 45 1 0.8396 -10.5488 -2.2270 46 1 2.4201 -9.7838 -1.9283 47 1 0.8933 -12.2626 0.1035 48 1 2.2717 -7.3784 -0.6287 49 1 0.6119 -6.8610 -0.2359 50 1 1.1321 -4.9082 -0.1729 51 1 -0.0827 -4.4572 -1.3950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001053037350.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:36 Heat of formation + Delta-G solvation = 43.753190 kcal Electronic energy + Delta-G solvation = -31796.921648 eV Core-core repulsion = 27732.264900 eV Total energy + Delta-G solvation = -4064.656748 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -44.50611 -41.38897 -39.76730 -38.14626 -35.64103 -35.09390 -34.12167 -33.27844 -32.91288 -32.19151 -29.85291 -28.93270 -27.45079 -26.65754 -25.19481 -24.58617 -23.78563 -23.06529 -22.58026 -21.53764 -20.67900 -20.55241 -19.19351 -18.66671 -18.33493 -17.55449 -17.03595 -16.77222 -16.30368 -15.90196 -15.75941 -15.41649 -15.21173 -14.93230 -14.85168 -14.67229 -14.32692 -14.16172 -14.10884 -14.04058 -13.76750 -13.65663 -13.56456 -13.14039 -13.11331 -12.89983 -12.69095 -12.43733 -12.33933 -12.26542 -12.04572 -11.91577 -11.84956 -11.74162 -11.71342 -11.48616 -11.42639 -11.36726 -10.99689 -10.84194 -10.54222 -10.32586 -9.80558 -8.58379 -7.87227 -5.39736 0.04532 0.84803 1.18216 1.45540 1.47232 1.47295 1.54139 1.99080 2.49961 3.07606 3.27770 3.31129 3.59448 3.64683 3.77084 3.84776 3.89479 4.00747 4.06670 4.19380 4.25878 4.35554 4.40171 4.46178 4.54902 4.57705 4.65137 4.69514 4.78120 4.80295 4.81981 4.86016 4.89052 4.94695 5.04246 5.07392 5.11017 5.13960 5.20488 5.26353 5.37141 5.39126 5.42171 5.45613 5.56125 5.59775 5.61569 5.67774 5.80302 6.09101 6.41888 6.74559 7.14231 7.16742 7.86708 8.40774 9.18078 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015611 B = 0.002649 C = 0.002418 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1793.135792 B =10565.722246 C =11575.524371 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.030 3.970 3 N -0.285 5.285 4 N -0.065 5.065 5 N -0.353 5.353 6 H 0.465 0.535 7 C -0.053 4.053 8 C 0.593 3.407 9 O -0.561 6.561 10 N -0.581 5.581 11 C 0.102 3.898 12 C -0.127 4.127 13 C -0.112 4.112 14 C -0.080 4.080 15 H 0.060 0.940 16 C -0.081 4.081 17 H 0.071 0.929 18 C -0.095 4.095 19 C -0.132 4.132 20 C 0.178 3.822 21 N -0.609 5.609 22 C -0.266 4.266 23 H 0.063 0.937 24 C -0.048 4.048 25 N -0.936 5.936 26 Si 0.967 3.033 27 H -0.274 1.274 28 H -0.294 1.294 29 H -0.277 1.277 30 C 0.150 3.850 31 C 0.116 3.884 32 H 0.085 0.915 33 H 0.102 0.898 34 H 0.087 0.913 35 H 0.100 0.900 36 H 0.083 0.917 37 H 0.060 0.940 38 H 0.103 0.897 39 H 0.079 0.921 40 H 0.078 0.922 41 H 0.088 0.912 42 H 0.046 0.954 43 H 0.053 0.947 44 H 0.066 0.934 45 H 0.042 0.958 46 H -0.011 1.011 47 H 0.250 0.750 48 H -0.004 1.004 49 H 0.046 0.954 50 H 0.068 0.932 51 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.838 22.745 -10.803 25.247 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.110 4.110 3 N -0.151 5.151 4 N -0.045 5.045 5 N -0.080 5.080 6 H 0.315 0.685 7 C -0.189 4.189 8 C 0.377 3.623 9 O -0.438 6.438 10 N -0.312 5.312 11 C -0.019 4.019 12 C -0.165 4.165 13 C -0.149 4.149 14 C -0.100 4.100 15 H 0.078 0.922 16 C -0.101 4.101 17 H 0.089 0.911 18 C -0.132 4.132 19 C -0.171 4.171 20 C 0.052 3.948 21 N -0.333 5.333 22 C -0.396 4.396 23 H 0.080 0.920 24 C -0.244 4.244 25 N -0.582 5.582 26 Si 0.794 3.206 27 H -0.199 1.199 28 H -0.220 1.220 29 H -0.202 1.202 30 C 0.025 3.975 31 C -0.005 4.005 32 H 0.104 0.896 33 H 0.120 0.880 34 H 0.106 0.894 35 H 0.118 0.882 36 H 0.102 0.898 37 H 0.079 0.921 38 H 0.121 0.879 39 H 0.097 0.903 40 H 0.097 0.903 41 H 0.106 0.894 42 H 0.064 0.936 43 H 0.072 0.928 44 H 0.085 0.915 45 H 0.060 0.940 46 H 0.007 0.993 47 H 0.059 0.941 48 H 0.014 0.986 49 H 0.064 0.936 50 H 0.087 0.913 51 H 0.107 0.893 Dipole moment (debyes) X Y Z Total from point charges 2.600 23.617 -10.217 25.863 hybrid contribution -0.223 -2.470 1.181 2.747 sum 2.377 21.146 -9.035 23.118 Atomic orbital electron populations 1.20360 0.83475 1.05247 1.04421 1.22642 0.99422 0.86398 1.02528 1.74855 0.95591 1.26659 1.18018 1.78164 1.15813 0.92486 1.18040 1.45402 1.08777 1.06335 1.47494 0.68524 1.21674 0.86435 0.95664 1.15174 1.17002 0.77979 0.83640 0.83720 1.90907 1.55513 1.63568 1.33843 1.48096 1.60855 1.14533 1.07726 1.22185 1.03227 0.94571 0.81927 1.21978 0.99219 0.95615 0.99672 1.21632 1.02482 0.95402 0.95396 1.21370 0.99090 0.93277 0.96217 0.92152 1.21448 0.99893 0.93136 0.95641 0.91058 1.21433 0.98117 0.94669 0.99027 1.22022 1.00449 0.97367 0.97260 1.20540 0.93863 0.93631 0.86760 1.44245 1.43351 1.09493 1.36176 1.19430 1.02028 0.94192 1.23980 0.91958 1.25969 0.99411 0.99044 0.99936 1.70164 1.28243 1.07526 1.52237 0.85360 0.79585 0.76880 0.78731 1.19927 1.22028 1.20234 1.21094 0.95257 0.85283 0.95883 1.21805 0.98615 0.79544 1.00580 0.89637 0.87965 0.89445 0.88211 0.89849 0.92112 0.87857 0.90256 0.90295 0.89391 0.93568 0.92799 0.91502 0.93965 0.99319 0.94145 0.98572 0.93579 0.91349 0.89291 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.98 10.28 71.24 0.73 -0.25 16 2 C 0.03 0.56 7.11 42.05 0.30 0.86 16 3 N -0.28 -6.23 12.35 -47.88 -0.59 -6.82 16 4 N -0.06 -1.33 13.35 37.02 0.49 -0.84 16 5 N -0.35 -5.90 7.07 -48.52 -0.34 -6.24 16 6 H 0.47 4.98 8.96 -219.90 -1.97 3.01 16 7 C -0.05 -1.02 5.07 40.41 0.20 -0.82 16 8 C 0.59 13.73 7.32 86.61 0.63 14.37 16 9 O -0.56 -18.51 16.52 -4.08 -0.07 -18.57 16 10 N -0.58 -10.75 2.97 -822.17 -2.44 -13.19 16 11 C 0.10 1.14 6.35 86.51 0.55 1.69 16 12 C -0.13 -1.29 6.10 30.82 0.19 -1.10 16 13 C -0.11 -1.56 4.86 30.62 0.15 -1.41 16 14 C -0.08 -1.74 1.92 -10.71 -0.02 -1.76 16 15 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 16 C -0.08 -2.37 1.92 -10.72 -0.02 -2.39 16 17 H 0.07 2.11 8.14 -2.39 -0.02 2.10 16 18 C -0.10 -2.71 4.86 30.62 0.15 -2.56 16 19 C -0.13 -4.68 6.08 30.67 0.19 -4.49 16 20 C 0.18 8.62 5.25 86.36 0.45 9.08 16 21 N -0.61 -30.92 2.97 -699.07 -2.07 -32.99 16 22 C -0.27 -14.86 9.54 84.03 0.80 -14.06 16 23 H 0.06 3.39 7.86 -2.91 -0.02 3.37 16 24 C -0.05 -2.73 4.98 84.86 0.42 -2.30 16 25 N -0.94 -56.63 11.35 21.65 0.25 -56.38 16 26 Si 0.97 45.42 29.57 68.60 2.03 47.45 16 27 H -0.27 -12.31 7.11 99.48 0.71 -11.60 16 28 H -0.29 -13.88 7.11 99.48 0.71 -13.17 16 29 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 30 C 0.15 6.21 5.28 86.36 0.46 6.67 16 31 C 0.12 2.65 5.20 86.36 0.45 3.10 16 32 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.10 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 0.94 8.02 -2.39 -0.02 0.92 16 35 H 0.10 0.76 8.14 -2.39 -0.02 0.75 16 36 H 0.08 0.89 6.24 -2.39 -0.01 0.87 16 37 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 38 H 0.10 0.61 8.14 -2.39 -0.02 0.59 16 39 H 0.08 1.07 6.34 -2.39 -0.02 1.06 16 40 H 0.08 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.09 1.87 6.34 -2.39 -0.02 1.86 16 42 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 43 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 44 H 0.07 2.10 8.14 -2.39 -0.02 2.08 16 45 H 0.04 2.32 6.35 -2.39 -0.02 2.31 16 46 H -0.01 -0.60 8.14 -2.39 -0.02 -0.61 16 47 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 48 H 0.00 -0.16 8.14 -2.39 -0.02 -0.18 16 49 H 0.05 1.93 6.69 -2.39 -0.02 1.91 16 50 H 0.07 2.07 5.75 -2.38 -0.01 2.06 16 51 H 0.09 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -75.41 394.44 1.86 -73.54 By element: Atomic # 1 Polarization: 10.45 SS G_CDS: -1.03 Total: 9.42 kcal Atomic # 6 Polarization: -1.01 SS G_CDS: 5.63 Total: 4.62 kcal Atomic # 7 Polarization: -111.76 SS G_CDS: -4.71 Total: -116.47 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.07 Total: -18.57 kcal Atomic # 14 Polarization: 45.42 SS G_CDS: 2.03 Total: 47.45 kcal Total: -75.41 1.86 -73.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053037350.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 117.297 kcal (2) G-P(sol) polarization free energy of solvation -75.406 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.891 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.862 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.544 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.753 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds