Wall clock time and date at job start Wed Apr 1 2020 05:06:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.33327 * 126.81316 * 2 1 4 4 N 1.28517 * 109.43528 * 180.26480 * 3 2 1 5 5 N 1.28707 * 110.63967 * 359.76351 * 4 3 2 6 6 H 0.97010 * 126.03505 * 180.02562 * 5 4 3 7 7 C 1.37013 * 126.81546 * 179.87482 * 2 1 3 8 8 C 1.47230 * 127.18633 * 0.02562 * 7 2 1 9 9 O 1.21615 * 120.00239 * 27.87004 * 8 7 2 10 10 N 1.34773 * 119.99850 * 207.87793 * 8 7 2 11 11 C 1.46933 * 120.63072 * 5.57391 * 10 8 7 12 12 C 1.53186 * 108.77657 * 233.58946 * 11 10 8 13 13 C 1.53039 * 109.31471 * 305.36350 * 12 11 10 14 14 C 1.53044 * 109.53831 * 61.36302 * 13 12 11 15 15 C 1.46927 * 120.63470 * 185.55293 * 10 8 7 16 16 H 1.08992 * 109.58587 * 246.34538 * 15 10 8 17 17 C 1.53001 * 109.58196 * 6.62734 * 15 10 8 18 18 H 1.09003 * 109.49719 * 306.19266 * 17 15 10 19 19 C 1.53039 * 109.49901 * 66.25530 * 17 15 10 20 20 C 1.53042 * 109.53747 * 181.31429 * 19 17 15 21 21 C 1.53191 * 109.31483 * 298.63718 * 20 19 17 22 22 N 1.46921 * 108.77454 * 54.63551 * 21 20 19 23 23 C 1.36942 * 120.63467 * 126.37082 * 22 21 20 24 24 H 1.08000 * 119.99178 * 335.39977 * 23 22 21 25 25 C 1.38807 * 119.99995 * 155.39556 * 23 22 21 26 26 N 1.31625 * 119.99578 * 156.80095 * 25 23 22 27 27 Si 1.86796 * 120.00505 * 336.80068 * 25 23 22 28 28 H 1.48497 * 109.47262 * 92.91444 * 27 25 23 29 29 H 1.48499 * 109.47317 * 212.91490 * 27 25 23 30 30 H 1.48504 * 109.46943 * 332.91346 * 27 25 23 31 31 C 1.46929 * 118.73680 * 306.38904 * 22 21 20 32 32 H 1.09002 * 109.46550 * 270.13140 * 1 2 3 33 33 H 1.09002 * 109.47431 * 30.12928 * 1 2 3 34 34 H 1.09002 * 109.47271 * 150.13111 * 1 2 3 35 35 H 1.08999 * 109.58568 * 353.38215 * 11 10 8 36 36 H 1.09004 * 109.58530 * 113.80295 * 11 10 8 37 37 H 1.09001 * 109.49718 * 65.31925 * 12 11 10 38 38 H 1.09006 * 109.49512 * 185.41420 * 12 11 10 39 39 H 1.08997 * 109.46443 * 181.38406 * 13 12 11 40 40 H 1.09007 * 109.46194 * 301.36059 * 13 12 11 41 41 H 1.08994 * 109.49976 * 178.67998 * 14 13 12 42 42 H 1.09009 * 109.49290 * 58.58538 * 14 13 12 43 43 H 1.08998 * 109.45787 * 61.29741 * 19 17 15 44 44 H 1.09001 * 109.46409 * 301.33966 * 19 17 15 45 45 H 1.09003 * 109.49617 * 178.68352 * 20 19 17 46 46 H 1.09003 * 109.52235 * 58.60970 * 20 19 17 47 47 H 1.08996 * 109.58644 * 174.42323 * 21 20 19 48 48 H 1.08998 * 109.58498 * 294.84708 * 21 20 19 49 49 H 0.96996 * 119.99963 * 180.02562 * 26 25 23 50 50 H 1.08993 * 109.59109 * 293.81809 * 31 22 21 51 51 H 1.09005 * 109.70057 * 173.46599 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.3059 1.0674 0.0000 4 7 3.5324 0.6836 -0.0056 5 7 3.6056 -0.6014 -0.0045 6 1 4.4213 -1.1265 -0.0075 7 6 2.3280 -1.0969 0.0024 8 6 1.9222 -2.5122 0.0050 9 8 0.8598 -2.8411 -0.4871 10 7 2.7281 -3.4432 0.5528 11 6 3.9553 -3.0495 1.2584 12 6 5.1373 -3.8161 0.6570 13 6 4.8417 -5.3171 0.7000 14 6 3.5955 -5.6175 -0.1361 15 6 2.3960 -4.8712 0.4563 16 1 2.1734 -5.2624 1.4489 17 6 1.1785 -5.0543 -0.4521 18 1 0.3619 -4.4256 -0.0971 19 6 1.5447 -4.6557 -1.8836 20 6 0.3184 -4.8074 -2.7866 21 6 -0.1288 -6.2725 -2.7920 22 7 -0.3436 -6.7064 -1.4049 23 6 -1.5323 -7.2715 -1.0267 24 1 -2.4330 -7.0576 -1.5829 25 6 -1.5795 -8.1192 0.0715 26 7 -2.7133 -8.2996 0.7153 27 14 -0.0341 -9.0038 0.6358 28 1 0.6458 -8.1956 1.6797 29 1 -0.3993 -10.3297 1.1960 30 1 0.8798 -9.1895 -0.5199 31 6 0.7410 -6.5222 -0.4311 32 1 -0.3632 0.0024 1.0277 33 1 -0.3634 0.8888 -0.5158 34 1 -0.3634 -0.8912 -0.5118 35 1 4.1167 -1.9780 1.1406 36 1 3.8623 -3.2929 2.3168 37 1 5.2854 -3.5039 -0.3768 38 1 6.0383 -3.6061 1.2336 39 1 5.6916 -5.8664 0.2952 40 1 4.6691 -5.6238 1.7317 41 1 3.3991 -6.6895 -0.1242 42 1 3.7581 -5.2883 -1.1625 43 1 2.3449 -5.3006 -2.2466 44 1 1.8799 -3.6186 -1.8974 45 1 0.5737 -4.5011 -3.8012 46 1 -0.4907 -4.1813 -2.4104 47 1 -1.0583 -6.3688 -3.3531 48 1 0.6437 -6.8886 -3.2522 49 1 -2.7462 -8.8916 1.4829 50 1 1.5844 -7.1588 -0.6986 51 1 0.3877 -6.7839 0.5664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001053093287.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:06:18 Heat of formation + Delta-G solvation = 127.362998 kcal Electronic energy + Delta-G solvation = -33613.740961 eV Core-core repulsion = 29552.709806 eV Total energy + Delta-G solvation = -4061.031155 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.44 seconds Orbital eigenvalues (eV) -43.70405 -41.03407 -37.80490 -37.44228 -34.56156 -33.67673 -33.06868 -32.46000 -31.89981 -30.54463 -29.03200 -28.12675 -25.79613 -25.22921 -24.28793 -23.87316 -22.77578 -22.37732 -21.19436 -20.90932 -19.88304 -19.07328 -18.04977 -17.15067 -16.73674 -16.57566 -15.96246 -15.75292 -15.13038 -14.78826 -14.62388 -14.34924 -14.24875 -13.97510 -13.71539 -13.67710 -13.28073 -13.15863 -13.07409 -12.90682 -12.78069 -12.32631 -12.12039 -12.06274 -12.05164 -11.73575 -11.38487 -11.36251 -11.21686 -11.02939 -10.95864 -10.87431 -10.65398 -10.49774 -10.34926 -10.02206 -9.75917 -9.62289 -9.40862 -9.32086 -8.95899 -8.70464 -8.48482 -6.90226 -5.90261 -3.20346 0.69729 2.01341 2.12785 2.57127 2.87286 3.29983 3.48537 3.51612 3.86351 4.17841 4.19880 4.40141 4.54795 4.56592 4.59083 4.80723 4.85988 4.87628 4.96681 5.02924 5.24415 5.34255 5.39816 5.42810 5.49710 5.51531 5.56841 5.58718 5.64928 5.74850 5.75779 5.80424 5.82517 5.97239 6.09608 6.11197 6.15428 6.24667 6.26892 6.33585 6.38054 6.49383 6.53842 6.74619 6.75925 6.86358 6.99391 7.10037 7.28775 7.94486 8.01521 8.04607 8.38022 9.01087 9.78786 10.17456 11.26045 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013247 B = 0.004148 C = 0.003602 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2113.114677 B = 6747.842086 C = 7771.124574 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C 0.057 3.943 3 N -0.268 5.268 4 N -0.057 5.057 5 N -0.382 5.382 6 H 0.451 0.549 7 C -0.064 4.064 8 C 0.586 3.414 9 O -0.470 6.470 10 N -0.601 5.601 11 C 0.092 3.908 12 C -0.139 4.139 13 C -0.120 4.120 14 C -0.139 4.139 15 C 0.154 3.846 16 H 0.077 0.923 17 C -0.115 4.115 18 H 0.124 0.876 19 C -0.091 4.091 20 C -0.128 4.128 21 C 0.149 3.851 22 N -0.601 5.601 23 C -0.253 4.253 24 H 0.086 0.914 25 C 0.021 3.979 26 N -0.908 5.908 27 Si 0.878 3.122 28 H -0.290 1.290 29 H -0.305 1.305 30 H -0.272 1.272 31 C 0.133 3.867 32 H 0.081 0.919 33 H 0.080 0.920 34 H 0.099 0.901 35 H 0.072 0.928 36 H 0.081 0.919 37 H 0.067 0.933 38 H 0.079 0.921 39 H 0.068 0.932 40 H 0.066 0.934 41 H 0.082 0.918 42 H 0.075 0.925 43 H 0.040 0.960 44 H 0.051 0.949 45 H 0.045 0.955 46 H 0.067 0.933 47 H 0.059 0.941 48 H 0.017 0.983 49 H 0.261 0.739 50 H 0.019 0.981 51 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.878 12.748 0.447 21.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.083 4.083 3 N -0.135 5.135 4 N -0.038 5.038 5 N -0.114 5.114 6 H 0.303 0.697 7 C -0.197 4.197 8 C 0.370 3.630 9 O -0.341 6.341 10 N -0.335 5.335 11 C -0.032 4.032 12 C -0.177 4.177 13 C -0.157 4.157 14 C -0.177 4.177 15 C 0.052 3.948 16 H 0.095 0.905 17 C -0.134 4.134 18 H 0.142 0.858 19 C -0.128 4.128 20 C -0.167 4.167 21 C 0.023 3.977 22 N -0.324 5.324 23 C -0.381 4.381 24 H 0.103 0.897 25 C -0.177 4.177 26 N -0.551 5.551 27 Si 0.709 3.291 28 H -0.218 1.218 29 H -0.233 1.233 30 H -0.197 1.197 31 C 0.006 3.994 32 H 0.099 0.901 33 H 0.099 0.901 34 H 0.118 0.882 35 H 0.089 0.911 36 H 0.100 0.900 37 H 0.085 0.915 38 H 0.097 0.903 39 H 0.086 0.914 40 H 0.085 0.915 41 H 0.100 0.900 42 H 0.094 0.906 43 H 0.059 0.941 44 H 0.070 0.930 45 H 0.063 0.937 46 H 0.085 0.915 47 H 0.077 0.923 48 H 0.035 0.965 49 H 0.071 0.929 50 H 0.036 0.964 51 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 17.838 13.817 0.263 22.565 hybrid contribution 1.201 -1.869 0.560 2.291 sum 19.039 11.948 0.823 22.493 Atomic orbital electron populations 1.20380 0.84716 1.05095 1.03818 1.22348 0.98642 0.86850 1.00436 1.74932 0.95167 1.26081 1.17324 1.78154 1.16157 0.92606 1.16851 1.46206 1.08942 1.06932 1.49307 0.69745 1.22399 0.84714 0.97091 1.15537 1.16836 0.84924 0.81789 0.79445 1.90950 1.21779 1.77607 1.43814 1.48029 1.23221 1.07230 1.55007 1.22093 0.84760 0.98595 0.97795 1.21999 0.97231 0.96907 1.01554 1.21528 0.98394 0.94821 1.01003 1.22161 0.93897 1.01420 1.00216 1.21518 0.95749 0.77144 1.00365 0.90547 1.22503 0.96701 0.99785 0.94453 0.85831 1.21588 0.97096 0.99223 0.94894 1.21909 0.98353 0.99037 0.97443 1.20931 0.98425 0.92063 0.86267 1.44259 1.13980 1.70456 1.03670 1.18959 0.85439 1.21104 1.12593 0.89677 1.25192 0.96032 0.98908 0.97613 1.69879 1.25884 1.39339 1.19998 0.87023 0.84740 0.79219 0.78165 1.21815 1.23333 1.19726 1.21413 0.90833 0.92659 0.94473 0.90075 0.90082 0.88214 0.91064 0.90044 0.91454 0.90277 0.91356 0.91510 0.89964 0.90618 0.94107 0.93038 0.93676 0.91474 0.92265 0.96505 0.92926 0.96365 0.91347 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.90 10.21 36.00 0.37 -0.53 16 2 C 0.06 0.71 7.29 -82.39 -0.60 0.11 16 3 N -0.27 -3.55 12.35 33.52 0.41 -3.13 16 4 N -0.06 -0.66 13.35 60.35 0.81 0.14 16 5 N -0.38 -3.58 5.80 33.31 0.19 -3.38 16 6 H 0.45 2.72 6.65 -190.32 -1.26 1.45 16 7 C -0.06 -0.74 6.47 -82.33 -0.53 -1.27 16 8 C 0.59 7.57 6.16 -12.61 -0.08 7.50 16 9 O -0.47 -7.51 9.17 5.26 0.05 -7.47 16 10 N -0.60 -6.74 2.94 -166.55 -0.49 -7.23 16 11 C 0.09 0.68 5.96 -3.71 -0.02 0.66 16 12 C -0.14 -0.85 6.08 -26.62 -0.16 -1.01 16 13 C -0.12 -0.98 5.88 -26.69 -0.16 -1.13 16 14 C -0.14 -1.60 4.66 -26.61 -0.12 -1.72 16 15 C 0.15 2.10 2.65 -67.60 -0.18 1.92 16 16 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 17 C -0.11 -2.01 1.58 -90.50 -0.14 -2.15 16 18 H 0.12 2.52 5.56 -53.84 -0.30 2.22 16 19 C -0.09 -1.48 3.57 -26.69 -0.10 -1.57 16 20 C -0.13 -2.28 6.05 -26.61 -0.16 -2.44 16 21 C 0.15 3.05 6.52 -3.71 -0.02 3.02 16 22 N -0.60 -14.47 2.80 -172.33 -0.48 -14.95 16 23 C -0.25 -7.16 10.04 -15.06 -0.15 -7.31 16 24 H 0.09 2.58 8.04 -52.49 -0.42 2.16 16 25 C 0.02 0.60 5.21 -17.43 -0.09 0.51 16 26 N -0.91 -28.00 13.97 55.49 0.78 -27.23 16 27 Si 0.88 22.20 24.37 -169.99 -4.14 18.05 16 28 H -0.29 -6.95 6.57 56.52 0.37 -6.58 16 29 H -0.30 -7.88 7.11 56.52 0.40 -7.48 16 30 H -0.27 -6.76 6.74 56.52 0.38 -6.37 16 31 C 0.13 2.84 3.39 -3.71 -0.01 2.83 16 32 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 33 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 34 H 0.10 1.23 6.55 -51.93 -0.34 0.88 16 35 H 0.07 0.44 3.54 -51.93 -0.18 0.26 16 36 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 37 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 38 H 0.08 0.32 8.14 -51.93 -0.42 -0.10 16 39 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 40 H 0.07 0.54 8.14 -51.92 -0.42 0.12 16 41 H 0.08 1.06 6.80 -51.93 -0.35 0.70 16 42 H 0.08 0.88 6.05 -51.92 -0.31 0.57 16 43 H 0.04 0.64 6.29 -51.93 -0.33 0.31 16 44 H 0.05 0.81 5.19 -51.93 -0.27 0.54 16 45 H 0.04 0.70 8.14 -51.93 -0.42 0.28 16 46 H 0.07 1.31 8.09 -51.93 -0.42 0.89 16 47 H 0.06 1.22 7.92 -51.93 -0.41 0.80 16 48 H 0.02 0.34 8.14 -51.93 -0.42 -0.09 16 49 H 0.26 7.64 8.31 -40.82 -0.34 7.30 16 50 H 0.02 0.39 5.63 -51.93 -0.29 0.10 16 51 H 0.07 1.63 4.30 -51.93 -0.22 1.41 16 LS Contribution 367.22 15.07 5.53 5.53 Total: -1.00 -33.22 367.22 -8.04 -41.27 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -8.53 Total: 0.98 kcal Atomic # 6 Polarization: -0.42 SS G_CDS: -2.17 Total: -2.59 kcal Atomic # 7 Polarization: -57.00 SS G_CDS: 1.22 Total: -55.79 kcal Atomic # 8 Polarization: -7.51 SS G_CDS: 0.05 Total: -7.47 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -4.14 Total: 18.05 kcal Total LS contribution 5.53 Total: 5.53 kcal Total: -33.22 -8.04 -41.27 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001053093287.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 168.631 kcal (2) G-P(sol) polarization free energy of solvation -33.224 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 135.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.268 kcal (6) G-S(sol) free energy of system = (1) + (5) 127.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.44 seconds