Wall clock time and date at job start Wed Apr 1 2020 04:27:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 110.05908 * 2 1 4 4 C 1.54269 * 110.03206 * 238.58391 * 2 1 3 5 5 C 1.54885 * 104.19811 * 264.32707 * 4 2 1 6 6 C 1.54966 * 102.77611 * 322.08240 * 5 4 2 7 7 C 1.53873 * 110.03024 * 121.42258 * 2 1 3 8 8 H 1.08995 * 110.03478 * 359.94756 * 7 2 1 9 9 C 1.50710 * 110.02869 * 238.56763 * 7 2 1 10 10 O 1.21284 * 119.99851 * 276.20736 * 9 7 2 11 11 N 1.34777 * 119.99855 * 96.21387 * 9 7 2 12 12 C 1.47419 * 125.64784 * 0.03831 * 11 9 7 13 13 C 1.54912 * 104.83052 * 204.09517 * 12 11 9 14 14 H 1.09002 * 111.00537 * 81.06667 * 13 12 11 15 15 N 1.46496 * 111.00470 * 204.91733 * 13 12 11 16 16 C 1.36937 * 120.00095 * 267.19725 * 15 13 12 17 17 H 1.08001 * 119.99985 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00282 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99727 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47298 * 89.99562 * 20 18 16 22 22 H 1.48495 * 109.46811 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46800 * 329.99580 * 20 18 16 24 24 C 1.55154 * 101.58226 * 322.99155 * 13 12 11 25 25 H 1.09003 * 110.72227 * 153.86542 * 24 13 12 26 26 N 1.46498 * 110.87211 * 277.07026 * 24 13 12 27 27 C 1.35304 * 125.87260 * 82.16611 * 26 24 13 28 28 C 1.35352 * 106.17838 * 179.90542 * 27 26 24 29 29 N 1.33767 * 106.49392 * 0.35408 * 28 27 26 30 30 N 1.28639 * 108.88702 * 359.77054 * 29 28 27 31 31 C 1.47023 * 125.64638 * 179.97438 * 11 9 7 32 32 H 1.09002 * 109.47642 * 298.58255 * 1 2 3 33 33 H 1.09001 * 109.47309 * 58.58245 * 1 2 3 34 34 H 1.09001 * 109.47378 * 178.57662 * 1 2 3 35 35 H 1.09000 * 109.47596 * 183.23776 * 3 2 1 36 36 H 1.08996 * 109.47493 * 303.24586 * 3 2 1 37 37 H 1.09005 * 109.47081 * 63.24269 * 3 2 1 38 38 H 1.08995 * 110.48639 * 23.00926 * 4 2 1 39 39 H 1.09007 * 110.48744 * 145.64532 * 4 2 1 40 40 H 1.08997 * 110.75804 * 80.37447 * 5 4 2 41 41 H 1.09001 * 110.75654 * 203.56382 * 5 4 2 42 42 H 1.09002 * 110.47712 * 279.23510 * 6 5 4 43 43 H 1.09005 * 110.52785 * 156.56889 * 6 5 4 44 44 H 1.09003 * 110.36619 * 322.92997 * 12 11 9 45 45 H 1.08999 * 110.37003 * 85.14572 * 12 11 9 46 46 H 0.96995 * 120.00534 * 87.19549 * 15 13 12 47 47 H 0.97007 * 119.99866 * 180.02562 * 19 18 16 48 48 H 1.08006 * 126.91146 * 0.02562 * 27 26 24 49 49 H 1.08002 * 126.75258 * 180.12807 * 28 27 26 50 50 H 1.09002 * 109.87927 * 59.55501 * 31 11 9 51 51 H 1.09000 * 110.00916 * 298.46481 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4371 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 2.3279 -2.1902 -0.7193 6 6 2.8871 -1.9414 0.7044 7 6 2.0570 -0.7537 1.2336 8 1 1.2228 -1.1186 1.8328 9 6 2.9275 0.1563 2.0615 10 8 4.0974 0.3011 1.7761 11 7 2.4060 0.8091 3.1191 12 6 1.0071 0.7244 3.5765 13 6 0.7633 2.0426 4.3528 14 1 0.5457 2.8637 3.6698 15 7 -0.3106 1.8819 5.3362 16 6 -1.6005 2.1941 4.9986 17 1 -1.8261 2.5592 4.0075 18 6 -2.6181 2.0423 5.9306 19 7 -2.3431 1.5979 7.1385 20 14 -4.3777 2.4676 5.4698 21 1 -5.0475 1.2656 4.9114 22 1 -5.1090 2.9251 6.6785 23 1 -4.3754 3.5501 4.4533 24 6 2.1322 2.2495 5.0531 25 1 2.3054 3.3062 5.2569 26 7 2.2103 1.4657 6.2883 27 6 2.5260 0.1529 6.3757 28 6 2.4823 -0.1587 7.6921 29 7 2.1388 0.9621 8.3365 30 7 1.9850 1.9064 7.4765 31 6 3.1383 1.7226 4.0083 32 1 -0.3634 0.4917 0.9024 33 1 -0.3634 0.5357 -0.8770 34 1 -0.3634 -1.0273 -0.0255 35 1 3.1431 1.4266 -0.0580 36 1 1.6501 1.9717 -0.8594 37 1 1.7447 1.9371 0.9177 38 1 1.3061 -0.7695 -2.0255 39 1 2.9810 -0.3000 -1.5967 40 1 1.4030 -2.7652 -0.6753 41 1 3.0651 -2.6942 -1.3443 42 1 3.9438 -1.6779 0.6585 43 1 2.7390 -2.8201 1.3322 44 1 0.3324 0.6563 2.7231 45 1 0.8743 -0.1350 4.2337 46 1 -0.1081 1.5543 6.2264 47 1 -3.0542 1.4915 7.7897 48 1 2.7665 -0.5121 5.5593 49 1 2.6816 -1.1234 8.1348 50 1 3.5442 2.5544 3.4324 51 1 3.9466 1.1886 4.5080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001070254935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:09 Heat of formation + Delta-G solvation = 80.324518 kcal Electronic energy + Delta-G solvation = -32999.485980 eV Core-core repulsion = 28936.415084 eV Total energy + Delta-G solvation = -4063.070896 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -42.88947 -40.84172 -38.74626 -37.24064 -34.33891 -33.60064 -32.35966 -31.32715 -30.64570 -30.19914 -28.71366 -27.81604 -27.41135 -25.13435 -24.18068 -23.64548 -22.23837 -21.82353 -21.07657 -20.22721 -19.93554 -18.24273 -17.79095 -17.36323 -17.08942 -15.96495 -15.79200 -15.57775 -15.14856 -14.69008 -14.67706 -14.52751 -13.96604 -13.82543 -13.65231 -13.55206 -13.38034 -13.11800 -13.03941 -12.89741 -12.55475 -12.31982 -12.10497 -11.84823 -11.71881 -11.48067 -11.26347 -11.22652 -11.19359 -11.01859 -10.95338 -10.89949 -10.73932 -10.69323 -10.53894 -10.47102 -10.25649 -9.98979 -9.77641 -9.61311 -9.16250 -8.91558 -8.64585 -7.28591 -5.94415 -3.30706 2.04358 2.58752 2.65836 2.93036 3.07621 3.31980 3.37238 3.40396 4.09833 4.26578 4.37778 4.42164 4.48377 4.61244 4.84349 4.92100 4.92856 5.09999 5.13164 5.16321 5.17867 5.24748 5.29232 5.32617 5.39175 5.45836 5.48117 5.51705 5.56916 5.63722 5.67062 5.68771 5.73310 5.74609 5.82587 5.85524 5.86829 5.94322 6.00248 6.08608 6.13420 6.16735 6.21863 6.27331 6.30351 6.34197 6.55545 7.00513 7.47604 7.50055 8.15333 8.18581 9.00450 9.31167 9.78492 10.12813 11.25265 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.004353 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.583530 B = 6430.483595 C = 8493.391160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.050 4.050 3 C -0.153 4.153 4 C -0.114 4.114 5 C -0.122 4.122 6 C -0.113 4.113 7 C -0.103 4.103 8 H 0.093 0.907 9 C 0.546 3.454 10 O -0.547 6.547 11 N -0.617 5.617 12 C 0.063 3.937 13 C 0.168 3.832 14 H 0.092 0.908 15 N -0.704 5.704 16 C -0.267 4.267 17 H 0.075 0.925 18 C 0.002 3.998 19 N -0.915 5.915 20 Si 0.910 3.090 21 H -0.288 1.288 22 H -0.289 1.289 23 H -0.280 1.280 24 C 0.112 3.888 25 H 0.131 0.869 26 N -0.269 5.269 27 C -0.050 4.050 28 C -0.055 4.055 29 N -0.272 5.272 30 N -0.064 5.064 31 C 0.106 3.894 32 H 0.062 0.938 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.065 0.935 36 H 0.057 0.943 37 H 0.059 0.941 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.067 0.933 42 H 0.084 0.916 43 H 0.067 0.933 44 H 0.083 0.917 45 H 0.071 0.929 46 H 0.393 0.607 47 H 0.260 0.740 48 H 0.177 0.823 49 H 0.183 0.817 50 H 0.092 0.908 51 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.403 -5.615 -14.566 18.759 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.051 4.051 3 C -0.211 4.211 4 C -0.151 4.151 5 C -0.159 4.159 6 C -0.150 4.150 7 C -0.125 4.125 8 H 0.111 0.889 9 C 0.336 3.664 10 O -0.425 6.425 11 N -0.351 5.351 12 C -0.063 4.063 13 C 0.053 3.947 14 H 0.110 0.890 15 N -0.344 5.344 16 C -0.397 4.397 17 H 0.093 0.907 18 C -0.196 4.196 19 N -0.559 5.559 20 Si 0.740 3.260 21 H -0.215 1.215 22 H -0.215 1.215 23 H -0.205 1.205 24 C 0.007 3.993 25 H 0.149 0.851 26 N -0.063 5.063 27 C -0.201 4.201 28 C -0.213 4.213 29 N -0.138 5.138 30 N -0.044 5.044 31 C -0.019 4.019 32 H 0.081 0.919 33 H 0.077 0.923 34 H 0.077 0.923 35 H 0.084 0.916 36 H 0.076 0.924 37 H 0.078 0.922 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.086 0.914 42 H 0.102 0.898 43 H 0.085 0.915 44 H 0.101 0.899 45 H 0.089 0.911 46 H 0.229 0.771 47 H 0.070 0.930 48 H 0.194 0.806 49 H 0.200 0.800 50 H 0.110 0.890 51 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges 10.453 -4.266 -13.922 17.925 hybrid contribution -0.849 -0.947 -0.562 1.391 sum 9.604 -5.213 -14.485 18.144 Atomic orbital electron populations 1.21996 0.93474 1.02080 1.02468 1.21014 0.95733 0.95259 0.93077 1.22126 1.01809 0.94991 1.02129 1.22488 1.00946 0.95144 0.96528 1.22468 1.00767 0.96809 0.95899 1.22376 1.00609 0.95948 0.96108 1.22095 0.98435 0.95582 0.96370 0.88854 1.20150 0.87736 0.79743 0.78818 1.90662 1.17302 1.64986 1.69512 1.48584 1.12337 1.45543 1.28680 1.23738 0.80323 1.02255 0.99956 1.21652 0.86078 0.95303 0.91658 0.89022 1.42341 1.02688 1.77655 1.11729 1.19157 0.83343 1.39364 0.97842 0.90711 1.24841 0.98368 1.00751 0.95670 1.69699 1.32312 1.49769 1.04164 0.86182 0.84484 0.78035 0.77337 1.21460 1.21521 1.20503 1.23200 0.99608 0.96374 0.80073 0.85128 1.47228 1.43195 1.08063 1.07799 1.23386 1.09402 0.87114 1.00175 1.23455 1.07165 0.99748 0.90889 1.75104 1.15507 0.98102 1.25058 1.78396 1.17622 1.22123 0.86230 1.22120 0.94019 0.94720 0.90991 0.91869 0.92295 0.92315 0.91572 0.92424 0.92188 0.91406 0.91290 0.91447 0.91408 0.89782 0.91452 0.89866 0.91057 0.77083 0.93000 0.80568 0.80017 0.89021 0.90400 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.38 8.14 37.15 0.30 -1.08 16 2 C -0.05 -0.51 0.94 -153.40 -0.14 -0.65 16 3 C -0.15 -1.67 7.23 37.16 0.27 -1.40 16 4 C -0.11 -1.01 5.90 -25.07 -0.15 -1.15 16 5 C -0.12 -1.02 6.91 -24.70 -0.17 -1.20 16 6 C -0.11 -1.14 6.32 -25.03 -0.16 -1.29 16 7 C -0.10 -1.14 2.40 -90.65 -0.22 -1.36 16 8 H 0.09 1.03 6.51 -51.93 -0.34 0.69 16 9 C 0.55 7.12 4.71 -10.98 -0.05 7.07 16 10 O -0.55 -8.53 15.16 5.55 0.08 -8.45 16 11 N -0.62 -7.79 2.99 -170.52 -0.51 -8.30 16 12 C 0.06 0.91 5.50 -2.53 -0.01 0.89 16 13 C 0.17 2.81 3.58 -65.78 -0.24 2.57 16 14 H 0.09 1.46 8.09 -51.93 -0.42 1.04 16 15 N -0.70 -16.03 5.21 -51.35 -0.27 -16.30 16 16 C -0.27 -6.78 9.96 -15.06 -0.15 -6.93 16 17 H 0.07 1.79 7.83 -52.49 -0.41 1.38 16 18 C 0.00 0.06 5.50 -17.43 -0.10 -0.03 16 19 N -0.91 -26.90 13.06 55.49 0.72 -26.18 16 20 Si 0.91 21.23 29.55 -169.99 -5.02 16.20 16 21 H -0.29 -6.67 7.11 56.52 0.40 -6.27 16 22 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 23 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 24 C 0.11 1.62 3.96 -66.10 -0.26 1.36 16 25 H 0.13 1.75 8.14 -51.93 -0.42 1.33 16 26 N -0.27 -4.55 2.31 -52.99 -0.12 -4.67 16 27 C -0.05 -0.77 9.27 -17.05 -0.16 -0.93 16 28 C -0.06 -0.91 12.05 -17.74 -0.21 -1.12 16 29 N -0.27 -5.50 12.41 30.23 0.38 -5.12 16 30 N -0.06 -1.31 12.45 60.35 0.75 -0.56 16 31 C 0.11 1.29 5.92 -3.06 -0.02 1.28 16 32 H 0.06 0.68 6.47 -51.93 -0.34 0.35 16 33 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 34 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 35 H 0.07 0.81 6.86 -51.93 -0.36 0.45 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.06 0.71 7.15 -51.93 -0.37 0.33 16 38 H 0.07 0.53 7.84 -51.93 -0.41 0.13 16 39 H 0.07 0.64 7.81 -51.92 -0.41 0.23 16 40 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 41 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 42 H 0.08 0.98 6.93 -51.93 -0.36 0.62 16 43 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 44 H 0.08 1.15 5.79 -51.93 -0.30 0.85 16 45 H 0.07 1.13 7.38 -51.93 -0.38 0.75 16 46 H 0.39 9.98 6.13 -40.82 -0.25 9.73 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.18 2.27 7.69 -52.48 -0.40 1.86 16 49 H 0.18 2.29 8.06 -52.49 -0.42 1.86 16 50 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 51 H 0.08 0.96 7.31 -51.93 -0.38 0.58 16 LS Contribution 394.05 15.07 5.94 5.94 Total: -1.00 -31.88 394.05 -7.58 -39.46 By element: Atomic # 1 Polarization: 20.01 SS G_CDS: -8.06 Total: 11.95 kcal Atomic # 6 Polarization: -2.50 SS G_CDS: -1.47 Total: -3.97 kcal Atomic # 7 Polarization: -62.09 SS G_CDS: 0.95 Total: -61.13 kcal Atomic # 8 Polarization: -8.53 SS G_CDS: 0.08 Total: -8.45 kcal Atomic # 14 Polarization: 21.23 SS G_CDS: -5.02 Total: 16.20 kcal Total LS contribution 5.94 Total: 5.94 kcal Total: -31.88 -7.58 -39.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070254935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 119.788 kcal (2) G-P(sol) polarization free energy of solvation -31.885 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 87.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.579 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.464 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.17 seconds