Wall clock time and date at job start Wed Apr 1 2020 04:27:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 C 1.52995 * 110.05908 * 2 1 4 4 C 1.54269 * 110.03206 * 238.58391 * 2 1 3 5 5 C 1.54885 * 104.19811 * 264.32707 * 4 2 1 6 6 C 1.54966 * 102.77611 * 322.08240 * 5 4 2 7 7 C 1.53873 * 110.03024 * 121.42258 * 2 1 3 8 8 H 1.08995 * 110.03478 * 359.94756 * 7 2 1 9 9 C 1.50710 * 110.02869 * 238.56763 * 7 2 1 10 10 O 1.21284 * 119.99851 * 276.20736 * 9 7 2 11 11 N 1.34777 * 119.99855 * 96.21387 * 9 7 2 12 12 C 1.47419 * 125.64784 * 0.03831 * 11 9 7 13 13 C 1.54912 * 104.83052 * 204.09517 * 12 11 9 14 14 H 1.09002 * 111.00537 * 81.06667 * 13 12 11 15 15 N 1.46496 * 111.00470 * 204.91733 * 13 12 11 16 16 C 1.36937 * 120.00095 * 267.19725 * 15 13 12 17 17 H 1.08001 * 119.99985 * 359.97438 * 16 15 13 18 18 C 1.38816 * 120.00282 * 180.02562 * 16 15 13 19 19 N 1.31616 * 119.99727 * 359.97438 * 18 16 15 20 20 Si 1.86803 * 120.00172 * 180.02562 * 18 16 15 21 21 H 1.48496 * 109.47298 * 89.99562 * 20 18 16 22 22 H 1.48495 * 109.46811 * 209.99996 * 20 18 16 23 23 H 1.48500 * 109.46800 * 329.99580 * 20 18 16 24 24 C 1.55154 * 101.58226 * 322.99155 * 13 12 11 25 25 H 1.09003 * 110.72227 * 153.86542 * 24 13 12 26 26 N 1.46498 * 110.87211 * 277.07026 * 24 13 12 27 27 C 1.35304 * 125.87260 * 82.16611 * 26 24 13 28 28 C 1.35352 * 106.17838 * 179.90542 * 27 26 24 29 29 N 1.33767 * 106.49392 * 0.35408 * 28 27 26 30 30 N 1.28639 * 108.88702 * 359.77054 * 29 28 27 31 31 C 1.47023 * 125.64638 * 179.97438 * 11 9 7 32 32 H 1.09002 * 109.47642 * 298.58255 * 1 2 3 33 33 H 1.09001 * 109.47309 * 58.58245 * 1 2 3 34 34 H 1.09001 * 109.47378 * 178.57662 * 1 2 3 35 35 H 1.09000 * 109.47596 * 183.23776 * 3 2 1 36 36 H 1.08996 * 109.47493 * 303.24586 * 3 2 1 37 37 H 1.09005 * 109.47081 * 63.24269 * 3 2 1 38 38 H 1.08995 * 110.48639 * 23.00926 * 4 2 1 39 39 H 1.09007 * 110.48744 * 145.64532 * 4 2 1 40 40 H 1.08997 * 110.75804 * 80.37447 * 5 4 2 41 41 H 1.09001 * 110.75654 * 203.56382 * 5 4 2 42 42 H 1.09002 * 110.47712 * 279.23510 * 6 5 4 43 43 H 1.09005 * 110.52785 * 156.56889 * 6 5 4 44 44 H 1.09003 * 110.36619 * 322.92997 * 12 11 9 45 45 H 1.08999 * 110.37003 * 85.14572 * 12 11 9 46 46 H 0.96995 * 120.00534 * 87.19549 * 15 13 12 47 47 H 0.97007 * 119.99866 * 180.02562 * 19 18 16 48 48 H 1.08006 * 126.91146 * 0.02562 * 27 26 24 49 49 H 1.08002 * 126.75258 * 180.12807 * 28 27 26 50 50 H 1.09002 * 109.87927 * 59.55501 * 31 11 9 51 51 H 1.09000 * 110.00916 * 298.46481 * 31 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0547 1.4371 0.0000 4 6 2.0584 -0.7555 -1.2369 5 6 2.3279 -2.1902 -0.7193 6 6 2.8871 -1.9414 0.7044 7 6 2.0570 -0.7537 1.2336 8 1 1.2228 -1.1186 1.8328 9 6 2.9275 0.1563 2.0615 10 8 4.0974 0.3011 1.7761 11 7 2.4060 0.8091 3.1191 12 6 1.0071 0.7244 3.5765 13 6 0.7633 2.0426 4.3528 14 1 0.5457 2.8637 3.6698 15 7 -0.3106 1.8819 5.3362 16 6 -1.6005 2.1941 4.9986 17 1 -1.8261 2.5592 4.0075 18 6 -2.6181 2.0423 5.9306 19 7 -2.3431 1.5979 7.1385 20 14 -4.3777 2.4676 5.4698 21 1 -5.0475 1.2656 4.9114 22 1 -5.1090 2.9251 6.6785 23 1 -4.3754 3.5501 4.4533 24 6 2.1322 2.2495 5.0531 25 1 2.3054 3.3062 5.2569 26 7 2.2103 1.4657 6.2883 27 6 2.5260 0.1529 6.3757 28 6 2.4823 -0.1587 7.6921 29 7 2.1388 0.9621 8.3365 30 7 1.9850 1.9064 7.4765 31 6 3.1383 1.7226 4.0083 32 1 -0.3634 0.4917 0.9024 33 1 -0.3634 0.5357 -0.8770 34 1 -0.3634 -1.0273 -0.0255 35 1 3.1431 1.4266 -0.0580 36 1 1.6501 1.9717 -0.8594 37 1 1.7447 1.9371 0.9177 38 1 1.3061 -0.7695 -2.0255 39 1 2.9810 -0.3000 -1.5967 40 1 1.4030 -2.7652 -0.6753 41 1 3.0651 -2.6942 -1.3443 42 1 3.9438 -1.6779 0.6585 43 1 2.7390 -2.8201 1.3322 44 1 0.3324 0.6563 2.7231 45 1 0.8743 -0.1350 4.2337 46 1 -0.1081 1.5543 6.2264 47 1 -3.0542 1.4915 7.7897 48 1 2.7665 -0.5121 5.5593 49 1 2.6816 -1.1234 8.1348 50 1 3.5442 2.5544 3.4324 51 1 3.9466 1.1886 4.5080 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070254935.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:27:08 Heat of formation + Delta-G solvation = 60.589509 kcal Electronic energy + Delta-G solvation = -33000.341754 eV Core-core repulsion = 28936.415084 eV Total energy + Delta-G solvation = -4063.926671 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.23200 -41.84926 -39.83563 -38.32004 -35.98581 -34.94084 -33.15064 -33.05106 -31.94727 -31.34316 -29.78183 -29.17440 -28.24357 -26.19293 -25.65117 -24.89387 -23.62206 -23.10461 -22.00781 -21.44514 -20.90440 -19.53802 -19.22459 -18.58020 -18.24539 -17.18863 -16.92786 -16.74811 -16.42533 -16.07265 -15.87179 -15.51238 -15.30048 -15.23299 -14.77244 -14.68633 -14.49633 -14.37780 -14.08040 -13.86205 -13.64027 -13.48954 -13.11579 -13.02373 -12.83505 -12.73353 -12.69695 -12.56261 -12.47098 -12.31520 -12.10617 -11.93364 -11.89958 -11.81022 -11.70971 -11.53302 -11.40248 -11.32627 -11.21753 -10.89252 -10.77417 -10.25253 -9.78751 -9.15826 -7.96908 -5.31349 0.72183 1.39268 1.48017 1.49482 1.57658 1.57817 1.72000 1.83564 2.51960 2.96933 3.23152 3.44042 3.50468 3.56322 3.62971 3.67020 3.71227 3.98418 4.05430 4.10855 4.17487 4.20201 4.30766 4.34902 4.39282 4.41629 4.46415 4.48673 4.53194 4.55152 4.69005 4.75321 4.80625 4.87483 4.91946 4.95483 5.01393 5.02985 5.05794 5.12702 5.20698 5.24255 5.30623 5.35622 5.38625 5.45937 5.49329 5.54942 5.72027 6.18864 6.38612 7.10035 7.28215 7.62335 7.95272 8.17539 9.24393 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009392 B = 0.004353 C = 0.003296 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2980.583530 B = 6430.483595 C = 8493.391160 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.049 4.049 3 C -0.149 4.149 4 C -0.112 4.112 5 C -0.117 4.117 6 C -0.113 4.113 7 C -0.104 4.104 8 H 0.095 0.905 9 C 0.549 3.451 10 O -0.570 6.570 11 N -0.611 5.611 12 C 0.084 3.916 13 C 0.160 3.840 14 H 0.104 0.896 15 N -0.722 5.722 16 C -0.249 4.249 17 H 0.090 0.910 18 C -0.065 4.065 19 N -0.963 5.963 20 Si 0.971 3.029 21 H -0.285 1.285 22 H -0.304 1.304 23 H -0.264 1.264 24 C 0.113 3.887 25 H 0.140 0.860 26 N -0.265 5.265 27 C -0.040 4.040 28 C -0.062 4.062 29 N -0.310 5.310 30 N -0.108 5.108 31 C 0.114 3.886 32 H 0.049 0.951 33 H 0.068 0.932 34 H 0.066 0.934 35 H 0.049 0.951 36 H 0.068 0.932 37 H 0.049 0.951 38 H 0.082 0.918 39 H 0.062 0.938 40 H 0.078 0.922 41 H 0.077 0.923 42 H 0.066 0.934 43 H 0.075 0.925 44 H 0.092 0.908 45 H 0.059 0.941 46 H 0.378 0.622 47 H 0.249 0.751 48 H 0.204 0.796 49 H 0.215 0.785 50 H 0.111 0.889 51 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.744 -6.403 -17.470 21.485 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.050 4.050 3 C -0.206 4.206 4 C -0.149 4.149 5 C -0.154 4.154 6 C -0.151 4.151 7 C -0.126 4.126 8 H 0.114 0.886 9 C 0.340 3.660 10 O -0.449 6.449 11 N -0.345 5.345 12 C -0.042 4.042 13 C 0.048 3.952 14 H 0.121 0.879 15 N -0.362 5.362 16 C -0.380 4.380 17 H 0.108 0.892 18 C -0.259 4.259 19 N -0.611 5.611 20 Si 0.800 3.200 21 H -0.212 1.212 22 H -0.232 1.232 23 H -0.188 1.188 24 C 0.010 3.990 25 H 0.158 0.842 26 N -0.059 5.059 27 C -0.191 4.191 28 C -0.219 4.219 29 N -0.175 5.175 30 N -0.087 5.087 31 C -0.010 4.010 32 H 0.068 0.932 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.068 0.932 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.101 0.899 39 H 0.081 0.919 40 H 0.097 0.903 41 H 0.096 0.904 42 H 0.085 0.915 43 H 0.094 0.906 44 H 0.110 0.890 45 H 0.077 0.923 46 H 0.212 0.788 47 H 0.058 0.942 48 H 0.221 0.779 49 H 0.232 0.768 50 H 0.129 0.871 51 H 0.101 0.899 Dipole moment (debyes) X Y Z Total from point charges 10.830 -5.022 -16.893 20.686 hybrid contribution -0.814 -0.713 0.237 1.107 sum 10.016 -5.735 -16.657 20.265 Atomic orbital electron populations 1.21971 0.92909 1.02613 1.02236 1.21042 0.96061 0.94704 0.93181 1.22073 1.00740 0.95714 1.02101 1.22483 1.01045 0.95122 0.96277 1.22470 1.01465 0.96730 0.94737 1.22375 0.99427 0.95761 0.97491 1.22187 0.98222 0.95632 0.96532 0.88648 1.20488 0.87558 0.79464 0.78468 1.90662 1.18453 1.65826 1.70001 1.48503 1.11523 1.45706 1.28755 1.23266 0.81381 0.99969 0.99586 1.21902 0.85544 0.96669 0.91121 0.87863 1.42468 1.03304 1.78068 1.12333 1.19625 0.84397 1.36208 0.97815 0.89216 1.25600 1.02135 1.02304 0.95816 1.69880 1.32706 1.53085 1.05466 0.85190 0.80159 0.78062 0.76583 1.21219 1.23151 1.18816 1.23303 0.98856 0.97125 0.79745 0.84193 1.47392 1.42245 1.08753 1.07542 1.23823 1.07914 0.86740 1.00666 1.24108 1.06309 1.00155 0.91345 1.75038 1.16725 0.99451 1.26250 1.78330 1.19765 1.23065 0.87491 1.22129 0.93167 0.95316 0.90378 0.93200 0.91332 0.91491 0.93173 0.91271 0.93228 0.89948 0.91907 0.90344 0.90390 0.91530 0.90634 0.89012 0.92273 0.78782 0.94189 0.77931 0.76796 0.87058 0.89934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.31 8.14 71.98 0.59 -1.73 16 2 C -0.05 -0.87 0.94 -51.46 -0.05 -0.92 16 3 C -0.15 -2.94 7.23 71.98 0.52 -2.42 16 4 C -0.11 -1.67 5.90 31.67 0.19 -1.49 16 5 C -0.12 -1.62 6.91 31.91 0.22 -1.40 16 6 C -0.11 -2.03 6.32 31.70 0.20 -1.82 16 7 C -0.10 -2.07 2.40 -10.81 -0.03 -2.10 16 8 H 0.10 1.86 6.51 -2.39 -0.02 1.85 16 9 C 0.55 13.25 4.71 87.66 0.41 13.66 16 10 O -0.57 -16.84 15.16 -3.04 -0.05 -16.89 16 11 N -0.61 -14.13 2.99 -811.78 -2.43 -16.55 16 12 C 0.08 2.24 5.50 86.86 0.48 2.72 16 13 C 0.16 5.12 3.58 46.38 0.17 5.29 16 14 H 0.10 3.09 8.09 -2.39 -0.02 3.07 16 15 N -0.72 -32.70 5.21 -316.38 -1.65 -34.35 16 16 C -0.25 -12.51 9.96 84.03 0.84 -11.67 16 17 H 0.09 4.14 7.83 -2.91 -0.02 4.11 16 18 C -0.07 -3.56 5.50 84.86 0.47 -3.09 16 19 N -0.96 -58.28 13.06 21.65 0.28 -58.00 16 20 Si 0.97 43.95 29.55 68.60 2.03 45.98 16 21 H -0.29 -12.63 7.11 99.48 0.71 -11.92 16 22 H -0.30 -14.39 7.11 99.48 0.71 -13.68 16 23 H -0.26 -11.05 7.11 99.48 0.71 -10.35 16 24 C 0.11 3.14 3.96 46.18 0.18 3.32 16 25 H 0.14 3.61 8.14 -2.39 -0.02 3.59 16 26 N -0.27 -8.84 2.31 -321.55 -0.74 -9.59 16 27 C -0.04 -1.18 9.27 83.49 0.77 -0.41 16 28 C -0.06 -1.97 12.05 83.73 1.01 -0.97 16 29 N -0.31 -12.75 12.41 -58.26 -0.72 -13.48 16 30 N -0.11 -4.48 12.45 37.02 0.46 -4.02 16 31 C 0.11 2.54 5.92 86.73 0.51 3.05 16 32 H 0.05 0.96 6.47 -2.39 -0.02 0.94 16 33 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 34 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 35 H 0.05 1.15 6.86 -2.39 -0.02 1.14 16 36 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 37 H 0.05 1.06 7.15 -2.38 -0.02 1.05 16 38 H 0.08 1.01 7.84 -2.39 -0.02 0.99 16 39 H 0.06 1.03 7.81 -2.38 -0.02 1.01 16 40 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 42 H 0.07 1.45 6.93 -2.39 -0.02 1.44 16 43 H 0.07 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.09 2.34 5.79 -2.39 -0.01 2.33 16 45 H 0.06 1.78 7.38 -2.39 -0.02 1.76 16 46 H 0.38 19.49 6.13 -92.71 -0.57 18.92 16 47 H 0.25 14.89 8.31 -92.70 -0.77 14.12 16 48 H 0.20 4.73 7.69 -2.91 -0.02 4.71 16 49 H 0.22 5.05 8.06 -2.91 -0.02 5.03 16 50 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 51 H 0.08 1.84 7.31 -2.39 -0.02 1.82 16 Total: -1.00 -70.69 394.05 4.04 -66.65 By element: Atomic # 1 Polarization: 39.84 SS G_CDS: 0.37 Total: 40.21 kcal Atomic # 6 Polarization: -6.45 SS G_CDS: 6.48 Total: 0.03 kcal Atomic # 7 Polarization: -131.19 SS G_CDS: -4.80 Total: -135.99 kcal Atomic # 8 Polarization: -16.84 SS G_CDS: -0.05 Total: -16.89 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -70.69 4.04 -66.65 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070254935.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 127.244 kcal (2) G-P(sol) polarization free energy of solvation -70.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.554 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.035 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.654 kcal (6) G-S(sol) free energy of system = (1) + (5) 60.590 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds