Wall clock time and date at job start Wed Apr 1 2020 05:30:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30833 * 125.96591 * 2 1 4 4 C 1.33238 * 109.83399 * 180.12484 * 3 2 1 5 5 C 1.50697 * 125.52777 * 179.85498 * 4 3 2 6 6 H 1.08998 * 110.37845 * 357.33177 * 5 4 3 7 7 C 1.54658 * 110.52685 * 234.87801 * 5 4 3 8 8 N 1.48240 * 104.67672 * 264.89800 * 7 5 4 9 9 C 1.34776 * 127.74379 * 141.02018 * 8 7 5 10 10 O 1.21279 * 120.00074 * 179.97438 * 9 8 7 11 11 C 1.50700 * 119.99764 * 359.97438 * 9 8 7 12 12 C 1.53005 * 109.46673 * 179.97438 * 11 9 8 13 13 C 1.53004 * 109.47093 * 65.00303 * 12 11 9 14 14 C 1.52998 * 109.46888 * 184.99340 * 12 11 9 15 15 C 1.48403 * 104.51386 * 321.05056 * 8 7 5 16 16 C 1.53276 * 110.42581 * 119.71422 * 5 4 3 17 17 C 1.52859 * 115.78132 * 348.70050 * 16 5 4 18 18 N 1.47788 * 85.76122 * 219.45732 * 17 16 5 19 19 C 1.36941 * 134.39488 * 203.83696 * 18 17 16 20 20 H 1.07998 * 120.00186 * 179.97438 * 19 18 17 21 21 C 1.38808 * 119.99705 * 0.02562 * 19 18 17 22 22 N 1.31625 * 120.00212 * 359.97438 * 21 19 18 23 23 Si 1.86806 * 120.00134 * 179.97438 * 21 19 18 24 24 H 1.48501 * 109.46895 * 89.99629 * 23 21 19 25 25 H 1.48495 * 109.47134 * 210.00236 * 23 21 19 26 26 H 1.48504 * 109.46808 * 329.99806 * 23 21 19 27 27 C 1.47794 * 91.21546 * 23.83503 * 18 17 16 28 28 N 1.30712 * 108.94250 * 359.58733 * 4 3 2 29 29 N 1.34441 * 125.96097 * 179.66902 * 2 1 3 30 30 H 0.96995 * 126.82088 * 0.06753 * 29 2 1 31 31 H 1.08995 * 109.46999 * 270.30277 * 1 2 3 32 32 H 1.08997 * 109.47042 * 30.30612 * 1 2 3 33 33 H 1.09005 * 109.46875 * 150.30742 * 1 2 3 34 34 H 1.08995 * 110.39898 * 23.69533 * 7 5 4 35 35 H 1.09000 * 110.40018 * 146.10424 * 7 5 4 36 36 H 1.09002 * 109.46794 * 299.98887 * 11 9 8 37 37 H 1.08990 * 109.47365 * 59.99588 * 11 9 8 38 38 H 1.08995 * 109.47697 * 305.00095 * 12 11 9 39 39 H 1.08996 * 109.46968 * 179.97438 * 13 12 11 40 40 H 1.08999 * 109.46605 * 299.99392 * 13 12 11 41 41 H 1.09000 * 109.47398 * 59.99666 * 13 12 11 42 42 H 1.09007 * 109.47182 * 60.00416 * 14 12 11 43 43 H 1.09001 * 109.47670 * 179.97438 * 14 12 11 44 44 H 1.08995 * 109.47568 * 300.00833 * 14 12 11 45 45 H 1.09000 * 110.45848 * 279.86503 * 15 8 7 46 46 H 1.09005 * 110.45943 * 157.29742 * 15 8 7 47 47 H 1.08995 * 113.82430 * 333.66818 * 17 16 5 48 48 H 1.09000 * 113.82609 * 105.24578 * 17 16 5 49 49 H 0.96996 * 119.99920 * 179.97438 * 22 21 19 50 50 H 1.09002 * 113.82523 * 221.95222 * 27 18 17 51 51 H 1.08999 * 113.93636 * 90.39002 * 27 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 -0.0027 5 6 4.7373 1.6235 -0.0067 6 1 4.4017 2.6595 -0.0547 7 6 5.6766 1.3050 -1.1934 8 7 6.7093 0.4066 -0.6242 9 6 7.2759 -0.6703 -1.2036 10 8 8.1147 -1.3099 -0.6050 11 6 6.8673 -1.0797 -2.5952 12 6 7.6557 -2.3225 -3.0133 13 6 7.2676 -3.4988 -2.1150 14 6 7.3335 -2.6649 -4.4692 15 6 6.9787 0.9584 0.7268 16 6 5.6016 1.3984 1.2389 17 6 4.9853 0.5173 2.3254 18 7 5.5849 1.4691 3.2838 19 6 5.9684 1.3935 4.5962 20 1 6.3946 2.2572 5.0849 21 6 5.8102 0.2065 5.2982 22 7 5.2912 -0.8462 4.7025 23 14 6.3340 0.1031 7.0883 24 1 5.1932 0.4815 7.9605 25 1 6.7568 -1.2857 7.4009 26 1 7.4684 1.0313 7.3265 27 6 5.6055 2.5352 2.2604 28 7 3.6194 -0.6168 0.0044 29 7 2.2965 -1.0882 0.0063 30 1 2.0094 -2.0146 0.0107 31 1 -0.3633 0.0054 1.0276 32 1 -0.3633 0.8872 -0.5186 33 1 -0.3633 -0.8928 -0.5091 34 1 5.1277 0.7981 -1.9869 35 1 6.1349 2.2190 -1.5711 36 1 5.8007 -1.3038 -2.6094 37 1 7.0771 -0.2662 -3.2895 38 1 8.7232 -2.1263 -2.9138 39 1 7.8288 -4.3842 -2.4131 40 1 7.4971 -3.2548 -1.0777 41 1 6.2000 -3.6951 -2.2144 42 1 7.6099 -1.8270 -5.1093 43 1 7.8954 -3.5501 -4.7673 44 1 6.2659 -2.8612 -4.5687 45 1 7.6520 1.8131 0.6619 46 1 7.3988 0.1897 1.3755 47 1 3.8953 0.5183 2.3273 48 1 5.4119 -0.4846 2.3744 49 1 5.1811 -1.6758 5.1929 50 1 6.5216 3.1259 2.2583 51 1 4.7039 3.1474 2.2414 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001070438988.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:30:47 Heat of formation + Delta-G solvation = 79.664725 kcal Electronic energy + Delta-G solvation = -32550.415729 eV Core-core repulsion = 28487.316222 eV Total energy + Delta-G solvation = -4063.099507 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -43.19206 -41.48247 -40.11097 -37.32495 -36.37929 -34.46373 -34.07460 -33.23345 -31.67177 -30.26493 -29.31877 -28.68682 -27.96782 -27.23380 -26.72203 -25.36924 -23.79934 -22.10836 -21.56419 -21.29558 -20.14444 -19.36612 -18.86547 -18.74559 -17.97411 -17.11425 -16.91397 -16.72377 -16.49097 -15.80003 -15.75460 -15.45454 -15.27192 -15.01096 -14.74504 -14.57049 -14.29003 -14.11693 -13.70461 -13.60863 -13.56764 -13.27780 -13.11523 -12.99780 -12.98185 -12.88236 -12.75257 -12.67232 -12.56829 -12.37817 -12.20271 -12.05321 -11.80398 -11.73454 -11.58932 -11.53351 -11.22848 -10.99701 -10.95257 -10.88042 -10.67516 -10.34705 -9.63946 -8.95156 -7.93199 -5.27022 0.73055 1.38533 1.41911 1.50334 1.70170 1.83361 1.92984 2.02651 2.43310 2.95411 3.24636 3.28521 3.44939 3.61001 3.76821 3.80496 3.87629 3.96559 4.00818 4.06796 4.12454 4.33819 4.43933 4.57811 4.64782 4.68287 4.71477 4.71842 4.72328 4.76282 4.77389 4.82338 4.84179 4.91144 4.93170 5.01395 5.03325 5.07159 5.10693 5.21016 5.25196 5.31593 5.41019 5.44692 5.46963 5.50872 5.51453 5.58795 5.88528 6.28165 6.66582 6.86425 7.20511 7.26135 7.58271 8.53074 9.23459 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008272 B = 0.004325 C = 0.003421 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3384.273762 B = 6472.008864 C = 8182.469478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 C 0.279 3.721 3 N -0.565 5.565 4 C 0.236 3.764 5 C -0.002 4.002 6 H 0.139 0.861 7 C 0.121 3.879 8 N -0.617 5.617 9 C 0.526 3.474 10 O -0.589 6.589 11 C -0.118 4.118 12 C -0.079 4.079 13 C -0.150 4.150 14 C -0.137 4.137 15 C 0.147 3.853 16 C -0.090 4.090 17 C 0.211 3.789 18 N -0.643 5.643 19 C -0.230 4.230 20 H 0.090 0.910 21 C -0.073 4.073 22 N -0.957 5.957 23 Si 0.977 3.023 24 H -0.284 1.284 25 H -0.300 1.300 26 H -0.263 1.263 27 C 0.138 3.862 28 N -0.330 5.330 29 N -0.483 5.483 30 H 0.448 0.552 31 H 0.094 0.906 32 H 0.108 0.892 33 H 0.112 0.888 34 H 0.093 0.907 35 H 0.128 0.872 36 H 0.097 0.903 37 H 0.123 0.877 38 H 0.061 0.939 39 H 0.059 0.941 40 H 0.033 0.967 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.061 0.939 44 H 0.061 0.939 45 H 0.097 0.903 46 H 0.033 0.967 47 H -0.007 1.007 48 H 0.017 0.983 49 H 0.243 0.757 50 H 0.074 0.926 51 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.554 3.280 -22.457 23.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.001 3.999 3 N -0.295 5.295 4 C -0.047 4.047 5 C -0.024 4.024 6 H 0.157 0.843 7 C -0.002 4.002 8 N -0.350 5.350 9 C 0.318 3.682 10 O -0.470 6.470 11 C -0.158 4.158 12 C -0.098 4.098 13 C -0.208 4.208 14 C -0.194 4.194 15 C 0.024 3.976 16 C -0.093 4.093 17 C 0.086 3.914 18 N -0.369 5.369 19 C -0.358 4.358 20 H 0.108 0.892 21 C -0.265 4.265 22 N -0.606 5.606 23 Si 0.806 3.194 24 H -0.211 1.211 25 H -0.226 1.226 26 H -0.187 1.187 27 C 0.014 3.986 28 N -0.159 5.159 29 N -0.202 5.202 30 H 0.295 0.705 31 H 0.113 0.887 32 H 0.127 0.873 33 H 0.131 0.869 34 H 0.111 0.889 35 H 0.146 0.854 36 H 0.115 0.885 37 H 0.141 0.859 38 H 0.080 0.920 39 H 0.078 0.922 40 H 0.052 0.948 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.080 0.920 44 H 0.080 0.920 45 H 0.115 0.885 46 H 0.052 0.948 47 H 0.011 0.989 48 H 0.035 0.965 49 H 0.051 0.949 50 H 0.092 0.908 51 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -6.435 2.689 -21.905 22.988 hybrid contribution -0.330 -1.420 2.114 2.568 sum -6.765 1.269 -19.791 20.953 Atomic orbital electron populations 1.20595 0.80337 1.06770 1.05355 1.25231 0.98225 0.82202 0.94194 1.70306 1.01392 1.30812 1.27029 1.23985 0.93268 0.90098 0.97334 1.20502 0.88493 0.98275 0.95149 0.84316 1.22680 0.87734 0.95354 0.94405 1.49121 1.41170 1.28161 1.16498 1.21089 0.80139 0.77590 0.89405 1.90662 1.35786 1.53574 1.66984 1.21750 1.02279 1.00427 0.91316 1.20861 0.99435 0.93265 0.96268 1.21899 1.00800 0.98322 0.99759 1.21782 1.02092 1.02291 0.93279 1.21635 0.94992 0.97753 0.83255 1.22666 0.95273 0.98456 0.92883 1.21566 0.92127 0.93117 0.84610 1.46517 1.71409 1.10577 1.08438 1.19491 1.32861 0.97094 0.86395 0.89235 1.25679 1.02357 0.95787 1.02670 1.70095 1.51667 1.01940 1.36940 0.85085 0.78205 0.76539 0.79616 1.21117 1.22649 1.18696 1.22691 1.00290 0.91121 0.84508 1.78089 0.97826 1.13026 1.26935 1.47993 1.03839 1.10815 1.57596 0.70452 0.88741 0.87315 0.86915 0.88851 0.85433 0.88454 0.85854 0.92005 0.92209 0.94754 0.92958 0.90960 0.92034 0.92012 0.88458 0.94789 0.98928 0.96473 0.94858 0.90825 0.92551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.94 10.51 71.24 0.75 -0.19 16 2 C 0.28 7.04 8.24 138.22 1.14 8.18 16 3 N -0.57 -17.67 11.19 -179.72 -2.01 -19.68 16 4 C 0.24 7.86 4.83 138.63 0.67 8.53 16 5 C 0.00 -0.05 3.35 -10.88 -0.04 -0.09 16 6 H 0.14 3.28 7.94 -2.39 -0.02 3.26 16 7 C 0.12 2.69 6.47 86.61 0.56 3.25 16 8 N -0.62 -19.38 3.33 -808.48 -2.69 -22.07 16 9 C 0.53 17.67 7.63 87.66 0.67 18.33 16 10 O -0.59 -25.78 14.24 -3.03 -0.04 -25.83 16 11 C -0.12 -2.67 4.15 29.85 0.12 -2.55 16 12 C -0.08 -1.82 2.57 -10.79 -0.03 -1.85 16 13 C -0.15 -4.19 8.93 71.98 0.64 -3.55 16 14 C -0.14 -2.09 9.19 71.98 0.66 -1.43 16 15 C 0.15 5.54 6.44 86.14 0.55 6.10 16 16 C -0.09 -3.42 1.16 -52.01 -0.06 -3.48 16 17 C 0.21 11.07 5.38 86.08 0.46 11.54 16 18 N -0.64 -34.73 3.70 -734.27 -2.72 -37.45 16 19 C -0.23 -13.56 10.70 84.03 0.90 -12.66 16 20 H 0.09 4.94 7.83 -2.91 -0.02 4.92 16 21 C -0.07 -4.42 5.50 84.86 0.47 -3.96 16 22 N -0.96 -62.92 11.40 21.65 0.25 -62.68 16 23 Si 0.98 48.67 29.55 68.60 2.03 50.69 16 24 H -0.28 -13.75 7.11 99.48 0.71 -13.04 16 25 H -0.30 -15.20 7.11 99.48 0.71 -14.50 16 26 H -0.26 -12.18 7.11 99.48 0.71 -11.47 16 27 C 0.14 5.49 8.14 86.08 0.70 6.19 16 28 N -0.33 -11.74 12.01 -51.34 -0.62 -12.35 16 29 N -0.48 -13.26 7.45 -50.70 -0.38 -13.64 16 30 H 0.45 9.24 8.96 -213.11 -1.91 7.33 16 31 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 32 H 0.11 1.19 8.14 -2.39 -0.02 1.17 16 33 H 0.11 0.74 8.14 -2.38 -0.02 0.72 16 34 H 0.09 1.81 7.03 -2.39 -0.02 1.80 16 35 H 0.13 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.10 2.11 7.95 -2.39 -0.02 2.09 16 37 H 0.12 1.91 8.14 -2.39 -0.02 1.89 16 38 H 0.06 1.61 7.95 -2.39 -0.02 1.59 16 39 H 0.06 1.47 8.14 -2.39 -0.02 1.45 16 40 H 0.03 1.26 5.95 -2.39 -0.01 1.25 16 41 H 0.05 1.34 8.14 -2.39 -0.02 1.33 16 42 H 0.07 0.86 8.14 -2.38 -0.02 0.84 16 43 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 44 H 0.06 0.86 8.14 -2.39 -0.02 0.84 16 45 H 0.10 3.10 8.05 -2.39 -0.02 3.08 16 46 H 0.03 1.68 7.65 -2.38 -0.02 1.66 16 47 H -0.01 -0.39 6.80 -2.39 -0.02 -0.41 16 48 H 0.02 1.07 7.08 -2.39 -0.02 1.06 16 49 H 0.24 15.62 8.31 -92.71 -0.77 14.85 16 50 H 0.07 2.57 8.05 -2.39 -0.02 2.55 16 51 H 0.06 2.09 8.12 -2.39 -0.02 2.08 16 Total: -1.00 -91.49 406.47 1.02 -90.47 By element: Atomic # 1 Polarization: 21.16 SS G_CDS: -0.97 Total: 20.18 kcal Atomic # 6 Polarization: 24.18 SS G_CDS: 8.17 Total: 32.35 kcal Atomic # 7 Polarization: -159.71 SS G_CDS: -8.17 Total: -167.87 kcal Atomic # 8 Polarization: -25.78 SS G_CDS: -0.04 Total: -25.83 kcal Atomic # 14 Polarization: 48.67 SS G_CDS: 2.03 Total: 50.69 kcal Total: -91.49 1.02 -90.47 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001070438988.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.134 kcal (2) G-P(sol) polarization free energy of solvation -91.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.646 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.018 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -90.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 79.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds