Wall clock time and date at job start Wed Apr 1 2020 05:17:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 N 1.33465 * 125.49470 * 2 1 4 4 C 1.30330 * 109.72440 * 179.97438 * 3 2 1 5 5 N 1.34675 * 108.04444 * 359.96483 * 4 3 2 6 6 N 1.30971 * 125.49403 * 179.68996 * 2 1 3 7 7 C 1.46298 * 125.05017 * 180.10658 * 5 4 3 8 8 C 1.53316 * 108.76454 * 17.05463 * 7 5 4 9 9 H 1.08998 * 109.46460 * 69.85016 * 8 7 5 10 10 C 1.50699 * 109.46417 * 189.84230 * 8 7 5 11 11 O 1.21282 * 119.99776 * 120.00173 * 10 8 7 12 12 N 1.34777 * 120.00080 * 299.99497 * 10 8 7 13 13 C 1.46506 * 119.99859 * 180.02562 * 12 10 8 14 14 H 1.08995 * 109.46682 * 35.00603 * 13 12 10 15 15 C 1.52991 * 109.47206 * 275.00324 * 13 12 10 16 16 C 1.53001 * 109.47175 * 180.02562 * 15 13 12 17 17 C 1.52995 * 109.47143 * 59.99599 * 16 15 13 18 18 C 1.52991 * 109.47413 * 300.00255 * 17 16 15 19 19 C 1.52995 * 109.46855 * 155.00079 * 13 12 10 20 20 H 1.09004 * 109.47213 * 60.00153 * 19 13 12 21 21 N 1.46499 * 109.47529 * 300.00333 * 19 13 12 22 22 C 1.36934 * 120.00584 * 154.99792 * 21 19 13 23 23 H 1.08002 * 119.99575 * 0.02562 * 22 21 19 24 24 C 1.38805 * 120.00457 * 179.97438 * 22 21 19 25 25 N 1.31624 * 120.00003 * 0.02562 * 24 22 21 26 26 Si 1.86799 * 120.00467 * 180.02562 * 24 22 21 27 27 H 1.48498 * 109.47055 * 60.00037 * 26 24 22 28 28 H 1.48499 * 109.47431 * 180.02562 * 26 24 22 29 29 H 1.48500 * 109.46880 * 300.00325 * 26 24 22 30 30 C 1.53161 * 109.48132 * 309.84487 * 8 7 5 31 31 C 1.50934 * 127.90544 * 179.97438 * 4 3 2 32 32 H 1.09001 * 109.46953 * 90.02526 * 1 2 3 33 33 H 1.09000 * 109.47318 * 210.02124 * 1 2 3 34 34 H 1.09000 * 109.47161 * 330.02754 * 1 2 3 35 35 H 1.09003 * 109.58735 * 136.83327 * 7 5 4 36 36 H 1.08998 * 109.59049 * 257.13009 * 7 5 4 37 37 H 0.96993 * 119.99898 * 0.02562 * 12 10 8 38 38 H 1.09004 * 109.46960 * 299.99907 * 15 13 12 39 39 H 1.09001 * 109.47492 * 59.99623 * 15 13 12 40 40 H 1.08998 * 109.46998 * 179.97438 * 16 15 13 41 41 H 1.09004 * 109.46829 * 299.99654 * 16 15 13 42 42 H 1.09004 * 109.47213 * 60.00291 * 17 16 15 43 43 H 1.08996 * 109.47076 * 180.02562 * 17 16 15 44 44 H 1.08999 * 109.47483 * 179.97438 * 18 17 16 45 45 H 1.09002 * 109.47438 * 299.99972 * 18 17 16 46 46 H 0.97005 * 119.99975 * 335.00029 * 21 19 13 47 47 H 0.97000 * 119.99792 * 179.97438 * 25 24 22 48 48 H 1.08998 * 109.50358 * 189.11438 * 30 8 7 49 49 H 1.09003 * 109.50893 * 309.19941 * 30 8 7 50 50 H 1.09003 * 109.71455 * 315.64174 * 31 4 3 51 51 H 1.08997 * 109.71660 * 76.28678 * 31 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 7 2.2820 1.0866 0.0000 4 6 3.5362 0.7324 0.0005 5 7 3.5897 -0.6133 0.0017 6 7 2.2675 -1.0663 0.0058 7 6 4.8197 -1.4053 0.0048 8 6 5.9848 -0.5050 0.4323 9 1 5.8828 -0.2559 1.4885 10 6 7.2872 -1.2302 0.2107 11 8 8.1203 -0.7653 -0.5382 12 7 7.5262 -2.3952 0.8448 13 6 8.7926 -3.0998 0.6298 14 1 9.5946 -2.3735 0.4984 15 6 8.6845 -3.9724 -0.6222 16 6 10.0068 -4.7087 -0.8464 17 6 10.3109 -5.5913 0.3658 18 6 10.4190 -4.7187 1.6178 19 6 9.0973 -3.9823 1.8419 20 1 8.2951 -4.7086 1.9734 21 7 9.2007 -3.1467 3.0408 22 6 8.9581 -3.6874 4.2753 23 1 8.6909 -4.7299 4.3651 24 6 9.0567 -2.8958 5.4112 25 7 9.3829 -1.6253 5.3018 26 14 8.7265 -3.6334 7.0953 27 1 9.6824 -4.7417 7.3464 28 1 8.8961 -2.5876 8.1358 29 1 7.3378 -4.1574 7.1425 30 6 5.9685 0.7809 -0.3995 31 6 4.7523 1.6265 0.0002 32 1 -0.3633 -0.0005 -1.0277 33 1 -0.3634 -0.8898 0.5142 34 1 -0.3633 0.8902 0.5134 35 1 4.7201 -2.2323 0.7078 36 1 5.0053 -1.7962 -0.9956 37 1 6.8599 -2.7670 1.4435 38 1 7.8824 -4.6987 -0.4907 39 1 8.4673 -3.3437 -1.4857 40 1 9.9296 -5.3308 -1.7381 41 1 10.8092 -3.9827 -0.9777 42 1 9.5085 -6.3173 0.4971 43 1 11.2531 -6.1155 0.2062 44 1 10.6352 -5.3475 2.4814 45 1 11.2214 -3.9927 1.4865 46 1 9.4411 -2.2104 2.9601 47 1 9.4514 -1.0721 6.0956 48 1 6.8817 1.3463 -0.2134 49 1 5.9058 0.5289 -1.4581 50 1 4.6141 2.4349 -0.7178 51 1 4.9042 2.0410 0.9968 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001085282341.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:17:58 Heat of formation + Delta-G solvation = 17.487035 kcal Electronic energy + Delta-G solvation = -31443.785773 eV Core-core repulsion = 27377.990039 eV Total energy + Delta-G solvation = -4065.795734 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.22 seconds Orbital eigenvalues (eV) -43.43689 -41.32697 -39.50004 -37.60001 -35.81549 -35.21692 -34.25554 -33.08401 -32.96205 -31.16247 -30.33297 -29.55062 -28.91072 -25.68324 -25.42473 -24.63747 -23.20746 -22.49868 -21.86006 -21.46155 -20.89464 -20.32270 -19.17408 -18.29073 -17.82647 -17.34322 -17.16787 -16.70275 -16.38040 -15.78432 -15.66644 -15.38020 -15.28081 -15.25049 -14.95415 -14.73502 -14.61083 -14.26667 -14.08848 -14.00103 -13.63371 -13.50176 -13.48568 -13.30690 -12.92585 -12.85133 -12.79441 -12.68614 -12.28864 -12.26349 -12.16707 -12.06384 -12.00585 -11.98119 -11.64727 -11.43393 -11.18427 -11.11139 -10.99727 -10.80055 -10.74231 -10.33688 -9.97210 -8.98933 -7.91994 -5.19979 0.52242 1.10497 1.48002 1.48901 1.54808 1.58329 1.79096 2.14899 2.56099 2.90838 3.10854 3.39506 3.44349 3.46982 3.69481 3.71215 3.79704 3.84729 4.02019 4.12975 4.17867 4.22601 4.27160 4.33182 4.36404 4.44267 4.50494 4.52894 4.60400 4.70967 4.72640 4.74337 4.87894 4.92671 4.93416 4.96191 5.02202 5.07413 5.17411 5.24908 5.28582 5.30300 5.31884 5.46181 5.47300 5.53122 5.56243 5.67429 5.73069 6.28347 6.53093 7.04503 7.18491 7.35827 8.09938 8.33453 9.30481 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008859 B = 0.003223 C = 0.002673 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3160.012916 B = 8684.779717 C =10472.719873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.055 4.055 2 C 0.205 3.795 3 N -0.563 5.563 4 C 0.276 3.724 5 N -0.381 5.381 6 N -0.345 5.345 7 C 0.144 3.856 8 C -0.115 4.115 9 H 0.113 0.887 10 C 0.529 3.471 11 O -0.566 6.566 12 N -0.703 5.703 13 C 0.149 3.851 14 H 0.058 0.942 15 C -0.115 4.115 16 C -0.111 4.111 17 C -0.111 4.111 18 C -0.129 4.129 19 C 0.172 3.828 20 H 0.057 0.943 21 N -0.730 5.730 22 C -0.231 4.231 23 H 0.077 0.923 24 C -0.070 4.070 25 N -0.966 5.966 26 Si 0.963 3.037 27 H -0.282 1.282 28 H -0.302 1.302 29 H -0.278 1.278 30 C -0.099 4.099 31 C -0.036 4.036 32 H 0.097 0.903 33 H 0.090 0.910 34 H 0.095 0.905 35 H 0.108 0.892 36 H 0.102 0.898 37 H 0.407 0.593 38 H 0.078 0.922 39 H 0.062 0.938 40 H 0.085 0.915 41 H 0.054 0.946 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.047 0.953 45 H 0.041 0.959 46 H 0.370 0.630 47 H 0.248 0.752 48 H 0.099 0.901 49 H 0.079 0.921 50 H 0.127 0.873 51 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.606 -0.307 -15.299 18.618 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 N -0.292 5.292 4 C 0.000 4.000 5 N -0.171 5.171 6 N -0.174 5.174 7 C 0.022 3.978 8 C -0.138 4.138 9 H 0.131 0.869 10 C 0.315 3.685 11 O -0.445 6.445 12 N -0.352 5.352 13 C 0.043 3.957 14 H 0.076 0.924 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.149 4.149 18 C -0.170 4.170 19 C 0.063 3.937 20 H 0.075 0.925 21 N -0.369 5.369 22 C -0.363 4.363 23 H 0.094 0.906 24 C -0.263 4.263 25 N -0.617 5.617 26 Si 0.793 3.207 27 H -0.208 1.208 28 H -0.228 1.228 29 H -0.205 1.205 30 C -0.138 4.138 31 C -0.075 4.075 32 H 0.116 0.884 33 H 0.109 0.891 34 H 0.114 0.886 35 H 0.126 0.874 36 H 0.120 0.880 37 H 0.243 0.757 38 H 0.096 0.904 39 H 0.080 0.920 40 H 0.104 0.896 41 H 0.073 0.927 42 H 0.089 0.911 43 H 0.089 0.911 44 H 0.066 0.934 45 H 0.060 0.940 46 H 0.201 0.799 47 H 0.057 0.943 48 H 0.118 0.882 49 H 0.098 0.902 50 H 0.145 0.855 51 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -10.400 -0.608 -15.673 18.819 hybrid contribution 0.269 -0.034 1.769 1.789 sum -10.131 -0.642 -13.904 17.215 Atomic orbital electron populations 1.20241 0.81366 1.04914 1.04842 1.25212 0.99869 0.85151 0.97415 1.70209 1.00528 1.31415 1.27068 1.24950 0.95662 0.84294 0.95077 1.50204 1.05621 1.06248 1.55054 1.77878 0.87165 1.23536 1.28800 1.21770 0.77650 0.93520 1.04887 1.21656 0.90994 0.96918 1.04224 0.86875 1.20212 0.88216 0.80529 0.79575 1.90689 1.48291 1.66900 1.38621 1.45978 1.19888 1.22731 1.46567 1.21165 0.85483 0.93676 0.95330 0.92380 1.21808 0.99225 0.98391 0.95959 1.21474 0.96332 0.98598 0.98488 1.21516 1.02279 0.97627 0.93447 1.22088 0.98387 0.98612 0.97875 1.20662 0.96132 0.91955 0.84977 0.92530 1.42547 1.83202 1.09673 1.01489 1.19501 1.37186 0.94671 0.84946 0.90559 1.25404 1.03711 0.96212 1.00925 1.69808 1.56810 1.06474 1.28615 0.85368 0.78101 0.76776 0.80426 1.20843 1.22833 1.20453 1.21513 0.98852 0.93505 0.99888 1.20593 0.84850 0.95719 1.06325 0.88427 0.89126 0.88637 0.87393 0.87996 0.75727 0.90368 0.91956 0.89613 0.92695 0.91110 0.91091 0.93435 0.93983 0.79859 0.94332 0.88243 0.90215 0.85453 0.86761 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.88 10.51 71.24 0.75 -0.13 16 2 C 0.21 5.27 8.15 138.49 1.13 6.40 16 3 N -0.56 -15.25 11.18 -179.30 -2.01 -17.25 16 4 C 0.28 6.73 7.72 138.37 1.07 7.80 16 5 N -0.38 -9.61 4.04 -338.31 -1.37 -10.98 16 6 N -0.34 -9.69 12.74 -51.08 -0.65 -10.34 16 7 C 0.14 2.97 6.42 86.52 0.56 3.53 16 8 C -0.12 -2.50 2.54 -11.38 -0.03 -2.53 16 9 H 0.11 2.55 8.12 -2.39 -0.02 2.53 16 10 C 0.53 14.60 7.10 87.66 0.62 15.22 16 11 O -0.57 -18.99 15.50 -3.04 -0.05 -19.03 16 12 N -0.70 -19.59 4.81 -442.55 -2.13 -21.72 16 13 C 0.15 4.48 1.98 44.99 0.09 4.57 16 14 H 0.06 2.10 7.58 -2.39 -0.02 2.08 16 15 C -0.11 -2.70 5.49 30.59 0.17 -2.53 16 16 C -0.11 -2.37 5.92 30.59 0.18 -2.19 16 17 C -0.11 -2.56 5.92 30.59 0.18 -2.38 16 18 C -0.13 -4.14 5.50 30.58 0.17 -3.97 16 19 C 0.17 5.93 2.29 44.97 0.10 6.03 16 20 H 0.06 1.91 8.08 -2.39 -0.02 1.89 16 21 N -0.73 -33.38 4.95 -323.02 -1.60 -34.98 16 22 C -0.23 -11.83 9.93 84.03 0.83 -10.99 16 23 H 0.08 3.74 7.83 -2.91 -0.02 3.72 16 24 C -0.07 -3.81 5.50 84.86 0.47 -3.35 16 25 N -0.97 -56.86 13.06 21.65 0.28 -56.58 16 26 Si 0.96 44.49 29.55 68.60 2.03 46.51 16 27 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 28 H -0.30 -14.34 7.11 99.48 0.71 -13.64 16 29 H -0.28 -12.34 7.11 99.48 0.71 -11.63 16 30 C -0.10 -1.88 4.68 30.79 0.14 -1.74 16 31 C -0.04 -0.61 6.33 30.07 0.19 -0.42 16 32 H 0.10 1.25 8.14 -2.39 -0.02 1.23 16 33 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 34 H 0.09 1.33 8.14 -2.39 -0.02 1.31 16 35 H 0.11 2.10 7.88 -2.39 -0.02 2.08 16 36 H 0.10 1.93 8.12 -2.39 -0.02 1.91 16 37 H 0.41 10.76 8.25 -92.71 -0.77 9.99 16 38 H 0.08 1.61 8.14 -2.39 -0.02 1.59 16 39 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 40 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 41 H 0.05 1.27 8.14 -2.39 -0.02 1.26 16 42 H 0.07 1.50 8.14 -2.39 -0.02 1.48 16 43 H 0.07 1.47 8.14 -2.39 -0.02 1.45 16 44 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 45 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.37 19.01 7.80 -92.70 -0.72 18.29 16 47 H 0.25 14.41 8.31 -92.71 -0.77 13.64 16 48 H 0.10 1.97 7.80 -2.39 -0.02 1.95 16 49 H 0.08 1.51 8.12 -2.39 -0.02 1.49 16 50 H 0.13 1.72 8.14 -2.39 -0.02 1.70 16 51 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 Total: -1.00 -70.25 406.88 0.58 -69.67 By element: Atomic # 1 Polarization: 41.91 SS G_CDS: -0.55 Total: 41.37 kcal Atomic # 6 Polarization: 6.71 SS G_CDS: 6.62 Total: 13.33 kcal Atomic # 7 Polarization: -144.37 SS G_CDS: -7.47 Total: -151.84 kcal Atomic # 8 Polarization: -18.99 SS G_CDS: -0.05 Total: -19.03 kcal Atomic # 14 Polarization: 44.49 SS G_CDS: 2.03 Total: 46.51 kcal Total: -70.25 0.58 -69.67 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001085282341.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.156 kcal (2) G-P(sol) polarization free energy of solvation -70.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.903 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.584 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.669 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.487 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.22 seconds