Wall clock time and date at job start Wed Apr 1 2020 05:12:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.36596 * 126.58384 * 2 1 4 4 C 1.47530 * 125.76858 * 359.97286 * 3 2 1 5 5 O 1.21599 * 119.99765 * 0.02562 * 4 3 2 6 6 N 1.34772 * 119.99896 * 180.02562 * 4 3 2 7 7 C 1.47576 * 125.63232 * 359.97438 * 6 4 3 8 8 C 1.54113 * 104.78779 * 203.32085 * 7 6 4 9 9 C 1.54391 * 102.48060 * 323.92795 * 8 7 6 10 10 C 1.47088 * 125.62829 * 180.02562 * 6 4 3 11 11 H 1.08996 * 110.00213 * 59.50816 * 10 6 4 12 12 C 1.53008 * 109.87487 * 298.43224 * 10 6 4 13 13 C 1.52109 * 110.69794 * 206.06886 * 8 7 6 14 14 C 1.53340 * 109.44594 * 176.94111 * 13 8 7 15 15 N 1.46935 * 108.69212 * 53.30033 * 14 13 8 16 16 C 1.36927 * 120.55174 * 125.64391 * 15 14 13 17 17 H 1.07995 * 120.00936 * 332.28636 * 16 15 14 18 18 C 1.38819 * 119.99609 * 152.55375 * 16 15 14 19 19 N 1.31622 * 119.99947 * 159.46544 * 18 16 15 20 20 Si 1.86798 * 120.00223 * 339.47411 * 18 16 15 21 21 H 1.48504 * 109.47130 * 93.21472 * 20 18 16 22 22 H 1.48497 * 109.47087 * 213.21995 * 20 18 16 23 23 H 1.48502 * 109.46986 * 333.21686 * 20 18 16 24 24 C 1.46928 * 118.88799 * 305.92387 * 15 14 13 25 25 C 1.52113 * 110.69122 * 81.78007 * 8 7 6 26 26 N 1.34398 * 108.46379 * 180.24147 * 3 2 1 27 27 N 1.28767 * 109.51916 * 359.58186 * 26 3 2 28 28 N 1.34815 * 126.58053 * 179.97438 * 2 1 3 29 29 C 1.46496 * 126.59259 * 359.97438 * 28 2 1 30 30 H 1.09000 * 109.47171 * 89.99719 * 1 2 3 31 31 H 1.08996 * 109.47326 * 209.99999 * 1 2 3 32 32 H 1.08998 * 109.47265 * 330.00759 * 1 2 3 33 33 H 1.09000 * 110.36981 * 84.49510 * 7 6 4 34 34 H 1.09002 * 110.37260 * 322.15233 * 7 6 4 35 35 H 1.08993 * 110.73497 * 152.98443 * 9 8 7 36 36 H 1.09002 * 110.73207 * 276.11633 * 9 8 7 37 37 H 1.08997 * 109.46907 * 302.16740 * 12 10 6 38 38 H 1.08999 * 109.46872 * 62.16207 * 12 10 6 39 39 H 1.08996 * 109.47205 * 182.16553 * 12 10 6 40 40 H 1.09003 * 109.47194 * 56.94883 * 13 8 7 41 41 H 1.08990 * 109.47555 * 296.93437 * 13 8 7 42 42 H 1.08999 * 109.60224 * 293.54021 * 14 13 8 43 43 H 1.09002 * 109.73500 * 173.13969 * 14 13 8 44 44 H 0.96998 * 119.99796 * 180.02562 * 19 18 16 45 45 H 1.09004 * 109.59910 * 173.83212 * 24 15 14 46 46 H 1.08995 * 109.60214 * 294.30707 * 24 15 14 47 47 H 1.08997 * 109.47365 * 303.05340 * 25 8 7 48 48 H 1.08994 * 109.47344 * 63.06438 * 25 8 7 49 49 H 1.09004 * 109.47239 * 90.00653 * 29 28 2 50 50 H 1.09001 * 109.47726 * 210.00170 * 29 28 2 51 51 H 1.08999 * 109.47300 * 330.00261 * 29 28 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0968 0.0000 4 6 1.8738 2.5027 -0.0006 5 8 0.6860 2.7628 -0.0006 6 7 2.7818 3.4987 -0.0010 7 6 4.2474 3.3260 -0.0005 8 6 4.7980 4.6393 0.5886 9 6 3.8220 5.6936 0.0234 10 6 2.4755 4.9373 -0.0011 11 1 1.8899 5.1939 0.8817 12 6 1.6966 5.3033 -1.2662 13 6 6.2116 4.9006 0.0913 14 6 6.7021 6.2489 0.6325 15 7 6.5389 6.2576 2.0927 16 6 7.6013 6.5370 2.9101 17 1 8.6069 6.3183 2.5826 18 6 7.3855 7.0963 4.1621 19 7 8.3092 6.9987 5.0947 20 14 5.7839 7.9873 4.5236 21 1 4.8157 7.0386 5.1303 22 1 6.0410 9.1040 5.4681 23 1 5.2219 8.5275 3.2597 24 6 5.2182 5.9555 2.6612 25 6 4.7347 4.6149 2.1082 26 7 3.5984 0.6789 -0.0054 27 7 3.6299 -0.6084 0.0001 28 7 2.3104 -1.0826 0.0005 29 6 1.8863 -2.4848 0.0016 30 1 -0.3633 0.0001 -1.0277 31 1 -0.3634 -0.8899 0.5138 32 1 -0.3634 0.8900 0.5137 33 1 4.6130 3.1835 -1.0174 34 1 4.5296 2.4807 0.6272 35 1 3.7657 6.5599 0.6824 36 1 4.1181 5.9938 -0.9818 37 1 2.2802 5.0277 -2.1446 38 1 0.7482 4.7662 -1.2770 39 1 1.5067 6.3765 -1.2782 40 1 6.2149 4.9235 -0.9985 41 1 6.8721 4.1070 0.4401 42 1 6.1137 7.0549 0.1940 43 1 7.7539 6.3857 0.3813 44 1 8.1582 7.3892 5.9696 45 1 5.2925 5.8960 3.7471 46 1 4.5126 6.7383 2.3830 47 1 3.7072 4.4384 2.4263 48 1 5.3741 3.8171 2.4858 49 1 1.7809 -2.8334 -1.0258 50 1 2.6331 -3.0900 0.5156 51 1 0.9294 -2.5746 0.5158 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001086911976.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:12:29 Heat of formation + Delta-G solvation = 69.459848 kcal Electronic energy + Delta-G solvation = -32386.853585 eV Core-core repulsion = 28323.311561 eV Total energy + Delta-G solvation = -4063.542024 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.33057 -41.65794 -39.74268 -37.67710 -35.95040 -34.80702 -33.50010 -32.98912 -32.63194 -32.02440 -29.23778 -28.67484 -28.34340 -27.14329 -25.68261 -24.76437 -24.39974 -22.84842 -22.68612 -21.73839 -20.39646 -19.77287 -18.55364 -18.42928 -17.59231 -17.33878 -17.14179 -16.74504 -16.17133 -15.94119 -15.54338 -15.30210 -15.26709 -15.13618 -14.93674 -14.48833 -14.38609 -14.31098 -14.12805 -14.00915 -13.97744 -13.63491 -13.49484 -13.35804 -13.30463 -13.18915 -12.95521 -12.78368 -12.57649 -12.30499 -12.19932 -12.06683 -11.94585 -11.87307 -11.60788 -11.49425 -11.19756 -11.11855 -11.08053 -10.94729 -10.64831 -10.25831 -9.61883 -8.86524 -8.14567 -5.44990 0.10008 0.59220 1.13114 1.30906 1.40883 1.50355 1.91808 2.18910 2.43529 3.07129 3.10858 3.34165 3.38672 3.50468 3.61053 3.61433 3.78071 3.80447 4.12471 4.15312 4.26965 4.29673 4.33795 4.38119 4.44155 4.51178 4.56372 4.62260 4.64092 4.65486 4.72860 4.76804 4.81684 4.82058 4.85988 4.90744 5.01090 5.03739 5.07609 5.11255 5.19020 5.23006 5.27936 5.29487 5.40050 5.46048 5.52197 5.59379 5.90766 6.15943 6.43636 6.81602 6.95916 7.09821 7.66731 8.07487 9.05653 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.015130 B = 0.003087 C = 0.002898 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1850.222464 B = 9066.947825 C = 9659.623848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.090 4.090 2 C 0.131 3.869 3 C -0.132 4.132 4 C 0.615 3.385 5 O -0.558 6.558 6 N -0.598 5.598 7 C 0.123 3.877 8 C -0.057 4.057 9 C -0.113 4.113 10 C 0.135 3.865 11 H 0.066 0.934 12 C -0.150 4.150 13 C -0.108 4.108 14 C 0.146 3.854 15 N -0.618 5.618 16 C -0.243 4.243 17 H 0.052 0.948 18 C -0.038 4.038 19 N -0.960 5.960 20 Si 0.945 3.055 21 H -0.282 1.282 22 H -0.313 1.313 23 H -0.254 1.254 24 C 0.127 3.873 25 C -0.107 4.107 26 N -0.220 5.220 27 N -0.099 5.099 28 N -0.354 5.354 29 C 0.072 3.928 30 H 0.107 0.893 31 H 0.111 0.889 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.080 0.920 35 H 0.079 0.921 36 H 0.100 0.900 37 H 0.061 0.939 38 H 0.054 0.946 39 H 0.082 0.918 40 H 0.094 0.906 41 H 0.051 0.949 42 H 0.044 0.956 43 H 0.055 0.945 44 H 0.260 0.740 45 H 0.041 0.959 46 H 0.039 0.961 47 H 0.060 0.940 48 H 0.047 0.953 49 H 0.110 0.890 50 H 0.108 0.892 51 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.412 -17.478 -16.446 31.506 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.009 4.009 3 C -0.272 4.272 4 C 0.403 3.597 5 O -0.437 6.437 6 N -0.329 5.329 7 C 0.001 3.999 8 C -0.058 4.058 9 C -0.151 4.151 10 C 0.033 3.967 11 H 0.084 0.916 12 C -0.208 4.208 13 C -0.147 4.147 14 C 0.021 3.979 15 N -0.343 5.343 16 C -0.373 4.373 17 H 0.069 0.931 18 C -0.232 4.232 19 N -0.607 5.607 20 Si 0.774 3.226 21 H -0.209 1.209 22 H -0.242 1.242 23 H -0.178 1.178 24 C 0.002 3.998 25 C -0.146 4.146 26 N -0.093 5.093 27 N -0.079 5.079 28 N -0.139 5.139 29 C -0.066 4.066 30 H 0.125 0.875 31 H 0.129 0.871 32 H 0.111 0.889 33 H 0.097 0.903 34 H 0.098 0.902 35 H 0.097 0.903 36 H 0.119 0.881 37 H 0.080 0.920 38 H 0.073 0.927 39 H 0.101 0.899 40 H 0.112 0.888 41 H 0.070 0.930 42 H 0.062 0.938 43 H 0.074 0.926 44 H 0.069 0.931 45 H 0.059 0.941 46 H 0.057 0.943 47 H 0.079 0.921 48 H 0.065 0.935 49 H 0.129 0.871 50 H 0.126 0.874 51 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -19.546 -17.823 -16.337 31.090 hybrid contribution -0.804 0.571 1.068 1.454 sum -20.350 -17.251 -15.269 30.739 Atomic orbital electron populations 1.20818 0.82104 1.06196 1.05728 1.22352 0.97476 0.85701 0.95366 1.21276 0.89604 0.95590 1.20777 1.16494 0.84524 0.82429 0.76285 1.90711 1.15874 1.83767 1.53325 1.48404 1.07313 1.06142 1.71041 1.22419 0.78221 0.97779 1.01518 1.20920 0.95903 0.94771 0.94171 1.22792 0.91944 0.97327 1.02996 1.21696 0.96991 0.78801 0.99243 0.91625 1.22039 1.00074 1.02533 0.96139 1.21711 0.94012 0.98133 1.00817 1.21140 0.99461 0.95548 0.81711 1.44456 1.06253 1.81076 1.02470 1.18891 0.87792 1.33424 0.97164 0.93051 1.25903 1.00328 1.00560 0.96431 1.69976 1.37720 1.48970 1.04037 0.85923 0.80704 0.78178 0.77757 1.20910 1.24188 1.17763 1.21268 0.86727 0.95340 0.96457 1.21575 0.99766 0.97753 0.95481 1.74679 1.19734 1.04511 1.10375 1.81934 0.98007 1.03412 1.24497 1.50628 1.05269 1.09392 1.48639 1.22709 1.04060 0.73205 1.06651 0.87512 0.87062 0.88875 0.90254 0.90196 0.90260 0.88149 0.92025 0.92711 0.89948 0.88763 0.93018 0.93787 0.92642 0.93130 0.94095 0.94296 0.92141 0.93463 0.87149 0.87369 0.85433 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.00 9.57 71.23 0.68 -0.31 16 2 C 0.13 2.48 7.02 41.72 0.29 2.77 16 3 C -0.13 -3.50 6.84 40.82 0.28 -3.22 16 4 C 0.61 17.55 7.64 86.69 0.66 18.21 16 5 O -0.56 -16.75 13.76 -4.03 -0.06 -16.81 16 6 N -0.60 -16.37 3.06 -792.54 -2.42 -18.80 16 7 C 0.12 3.38 5.00 86.55 0.43 3.81 16 8 C -0.06 -1.65 0.55 -51.92 -0.03 -1.68 16 9 C -0.11 -2.81 4.45 31.56 0.14 -2.67 16 10 C 0.14 3.38 3.08 45.38 0.14 3.52 16 11 H 0.07 1.78 8.14 -2.39 -0.02 1.76 16 12 C -0.15 -3.17 9.10 71.98 0.65 -2.51 16 13 C -0.11 -3.20 4.84 30.41 0.15 -3.05 16 14 C 0.15 5.35 6.25 86.41 0.54 5.89 16 15 N -0.62 -28.89 2.76 -699.42 -1.93 -30.82 16 16 C -0.24 -13.94 10.02 84.04 0.84 -13.10 16 17 H 0.05 3.22 8.06 -2.91 -0.02 3.20 16 18 C -0.04 -2.27 5.23 84.86 0.44 -1.82 16 19 N -0.96 -61.81 13.97 21.65 0.30 -61.51 16 20 Si 0.95 47.57 24.36 68.60 1.67 49.24 16 21 H -0.28 -13.69 6.63 99.48 0.66 -13.03 16 22 H -0.31 -16.03 7.11 99.48 0.71 -15.32 16 23 H -0.25 -11.92 6.64 99.48 0.66 -11.26 16 24 C 0.13 5.44 3.87 86.25 0.33 5.77 16 25 C -0.11 -3.83 4.84 30.26 0.15 -3.68 16 26 N -0.22 -6.35 9.41 -49.99 -0.47 -6.82 16 27 N -0.10 -2.55 13.78 37.02 0.51 -2.04 16 28 N -0.35 -5.98 4.03 -355.11 -1.43 -7.41 16 29 C 0.07 0.32 11.33 127.77 1.45 1.77 16 30 H 0.11 0.89 8.14 -2.39 -0.02 0.87 16 31 H 0.11 0.38 7.18 -2.39 -0.02 0.37 16 32 H 0.09 1.49 6.43 -2.39 -0.02 1.48 16 33 H 0.08 2.00 7.99 -2.39 -0.02 1.98 16 34 H 0.08 2.48 6.09 -2.39 -0.01 2.47 16 35 H 0.08 2.15 6.19 -2.39 -0.01 2.13 16 36 H 0.10 2.07 7.69 -2.39 -0.02 2.05 16 37 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 38 H 0.05 1.31 6.89 -2.39 -0.02 1.30 16 39 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 40 H 0.09 2.17 8.09 -2.39 -0.02 2.15 16 41 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 42 H 0.04 1.47 7.62 -2.39 -0.02 1.45 16 43 H 0.05 2.10 7.93 -2.39 -0.02 2.08 16 44 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 45 H 0.04 2.00 4.47 -2.39 -0.01 1.99 16 46 H 0.04 1.58 5.53 -2.39 -0.01 1.57 16 47 H 0.06 2.06 7.81 -2.39 -0.02 2.04 16 48 H 0.05 1.86 8.14 -2.39 -0.02 1.84 16 49 H 0.11 0.09 8.14 -2.38 -0.02 0.07 16 50 H 0.11 0.39 8.14 -2.39 -0.02 0.38 16 51 H 0.13 -0.22 7.16 -2.39 -0.02 -0.23 16 Total: -1.00 -78.63 383.68 4.17 -74.46 By element: Atomic # 1 Polarization: 9.95 SS G_CDS: 0.85 Total: 10.80 kcal Atomic # 6 Polarization: 2.53 SS G_CDS: 7.16 Total: 9.69 kcal Atomic # 7 Polarization: -121.94 SS G_CDS: -5.44 Total: -127.38 kcal Atomic # 8 Polarization: -16.75 SS G_CDS: -0.06 Total: -16.81 kcal Atomic # 14 Polarization: 47.57 SS G_CDS: 1.67 Total: 49.24 kcal Total: -78.63 4.17 -74.46 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001086911976.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 143.920 kcal (2) G-P(sol) polarization free energy of solvation -78.635 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 65.285 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.175 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.460 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds