Wall clock time and date at job start Wed Apr 1 2020 05:14:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36597 * 126.58110 * 2 1 4 4 C 1.47522 * 125.76861 * 0.04235 * 3 2 1 5 5 O 1.21591 * 120.00079 * 359.70774 * 4 3 2 6 6 N 1.34777 * 119.99447 * 179.71425 * 4 3 2 7 7 C 1.46503 * 119.99543 * 179.97438 * 6 4 3 8 8 H 1.09000 * 113.22282 * 28.30641 * 7 6 4 9 9 C 1.50001 * 114.12674 * 255.49378 * 7 6 4 10 10 H 1.08993 * 112.50767 * 322.39721 * 9 7 6 11 11 C 1.51206 * 126.17154 * 104.79350 * 9 7 6 12 12 C 1.54089 * 106.19422 * 161.42976 * 11 9 7 13 13 C 1.52497 * 112.67027 * 304.56302 * 12 11 9 14 14 N 1.49348 * 111.80885 * 47.04999 * 13 12 11 15 15 C 1.36932 * 123.71849 * 128.22412 * 14 13 12 16 16 H 1.08002 * 119.99795 * 150.56783 * 15 14 13 17 17 C 1.38810 * 120.00753 * 330.56344 * 15 14 13 18 18 N 1.31622 * 119.99653 * 343.02089 * 17 15 14 19 19 Si 1.86803 * 120.00586 * 163.01710 * 17 15 14 20 20 H 1.48505 * 109.46882 * 60.00206 * 19 17 15 21 21 H 1.48494 * 109.47486 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46814 * 300.00617 * 19 17 15 23 23 C 1.45377 * 113.10814 * 307.74953 * 14 13 12 24 24 H 1.08998 * 112.09617 * 300.66844 * 23 14 13 25 25 C 1.49965 * 126.21289 * 156.24281 * 23 14 13 26 26 C 1.52994 * 114.08874 * 334.35085 * 25 23 14 27 27 C 1.53003 * 114.08707 * 106.77590 * 25 23 14 28 28 N 1.34399 * 108.45657 * 179.77179 * 3 2 1 29 29 N 1.28760 * 109.52607 * 0.23241 * 28 3 2 30 30 N 1.34818 * 126.57750 * 180.16678 * 2 1 3 31 31 C 1.46503 * 126.59767 * 359.97438 * 30 2 1 32 32 H 1.09003 * 109.46793 * 89.99749 * 1 2 3 33 33 H 1.09002 * 109.47326 * 209.99786 * 1 2 3 34 34 H 1.09001 * 109.47154 * 330.00003 * 1 2 3 35 35 H 0.96996 * 120.00628 * 0.02562 * 6 4 3 36 36 H 1.09001 * 110.10188 * 280.59697 * 11 9 7 37 37 H 1.09000 * 110.10232 * 42.25885 * 11 9 7 38 38 H 1.09002 * 108.84263 * 65.38093 * 12 11 9 39 39 H 1.08997 * 108.84757 * 183.73625 * 12 11 9 40 40 H 1.08998 * 109.00160 * 167.39811 * 13 12 11 41 41 H 1.09000 * 108.99920 * 286.17020 * 13 12 11 42 42 H 0.96995 * 120.00341 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47366 * 61.72636 * 26 25 23 44 44 H 1.08997 * 109.47723 * 181.72853 * 26 25 23 45 45 H 1.09000 * 109.46993 * 301.72956 * 26 25 23 46 46 H 1.09005 * 109.47080 * 59.99434 * 27 25 23 47 47 H 1.08993 * 109.47399 * 179.97438 * 27 25 23 48 48 H 1.09003 * 109.46565 * 300.00234 * 27 25 23 49 49 H 1.08992 * 109.47049 * 270.24625 * 31 30 2 50 50 H 1.09002 * 109.46669 * 30.24109 * 31 30 2 51 51 H 1.08990 * 109.46877 * 150.23921 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6860 2.7627 -0.0037 6 7 2.7818 3.4986 0.0066 7 6 2.3376 4.8947 0.0069 8 1 1.3648 5.0361 0.4778 9 6 2.4844 5.5851 -1.3166 10 1 3.3913 5.2888 -1.8435 11 6 1.3671 5.9112 -2.2819 12 6 1.9170 6.9996 -3.2239 13 6 2.4386 8.2192 -2.4716 14 7 3.3191 7.8318 -1.3292 15 6 4.5736 8.3429 -1.1289 16 1 4.9688 8.4270 -0.1274 17 6 5.3374 8.7528 -2.2131 18 7 5.0212 8.3572 -3.4280 19 14 6.8139 9.8660 -1.9480 20 1 7.7902 9.1894 -1.0568 21 1 7.4554 10.1572 -3.2552 22 1 6.3694 11.1368 -1.3212 23 6 2.7045 6.8604 -0.4391 24 1 1.7754 7.2312 -0.0064 25 6 3.4262 5.9091 0.4681 26 6 4.8421 5.5585 0.0063 27 6 3.3472 6.2787 1.9507 28 7 3.5983 0.6788 0.0051 29 7 3.6299 -0.6084 0.0033 30 7 2.3104 -1.0827 -0.0032 31 6 1.8863 -2.4850 -0.0067 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 3.7293 3.2912 0.0098 36 1 1.0949 5.0238 -2.8534 37 1 0.5009 6.2886 -1.7386 38 1 2.7294 6.5763 -3.8146 39 1 1.1216 7.3158 -3.8987 40 1 3.0093 8.8431 -3.1595 41 1 1.5918 8.7924 -2.0942 42 1 5.5546 8.6439 -4.1856 43 1 5.4504 6.4626 -0.0190 44 1 5.2837 4.8428 0.6997 45 1 4.8009 5.1202 -0.9908 46 1 2.3039 6.2940 2.2662 47 1 3.8934 5.5413 2.5387 48 1 3.7873 7.2642 2.1034 49 1 1.7773 -2.8342 1.0200 50 1 0.9312 -2.5743 -0.5242 51 1 2.6349 -3.0895 -0.5186 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087281034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:32 Heat of formation + Delta-G solvation = 124.089618 kcal Electronic energy + Delta-G solvation = -32302.506937 eV Core-core repulsion = 28241.333838 eV Total energy + Delta-G solvation = -4061.173099 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.55 seconds Orbital eigenvalues (eV) -42.38592 -40.79596 -38.59081 -35.27293 -35.06123 -33.06319 -32.81412 -32.45728 -30.17572 -29.26935 -28.36026 -27.70900 -26.99757 -25.70285 -24.71620 -23.27902 -22.09649 -21.31554 -20.60339 -19.98322 -19.14520 -18.52559 -17.62371 -16.61106 -16.55920 -16.03114 -15.63180 -14.70164 -14.67803 -14.38840 -14.17277 -14.03244 -13.83079 -13.62364 -13.58995 -13.31323 -13.24990 -12.98599 -12.84016 -12.63741 -12.52660 -12.32513 -12.07159 -11.69520 -11.46674 -11.30667 -11.19031 -11.09150 -10.98818 -10.82506 -10.65845 -10.41556 -10.35440 -10.24425 -10.04514 -9.94502 -9.76101 -9.44597 -9.28141 -9.24558 -8.83259 -8.46966 -8.33097 -6.49019 -5.71938 -3.13361 0.95783 1.68552 1.82343 3.37882 3.41114 3.41183 3.47412 3.49080 4.04408 4.10322 4.41468 4.52808 4.56768 4.65846 4.82895 4.84507 5.05981 5.10246 5.20102 5.29888 5.38159 5.42533 5.50802 5.58144 5.69252 5.77827 5.96229 5.97985 6.02180 6.17898 6.19304 6.22024 6.25281 6.39457 6.43978 6.47945 6.59571 6.65245 6.72555 6.77957 6.85213 6.88852 7.01238 7.15501 7.17542 7.35330 7.54132 7.69523 7.74292 7.82628 7.94193 8.40796 8.49513 9.19584 9.87243 10.55761 11.35627 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002909 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.300536 B = 9622.191329 C =10046.430060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.101 4.101 4 C 0.602 3.398 5 O -0.544 6.544 6 N -0.693 5.693 7 C 0.139 3.861 8 H 0.111 0.889 9 C -0.164 4.164 10 H 0.099 0.901 11 C -0.088 4.088 12 C -0.121 4.121 13 C 0.155 3.845 14 N -0.569 5.569 15 C -0.232 4.232 16 H 0.066 0.934 17 C 0.002 3.998 18 N -0.896 5.896 19 Si 0.895 3.105 20 H -0.283 1.283 21 H -0.292 1.292 22 H -0.286 1.286 23 C 0.146 3.854 24 H 0.053 0.947 25 C -0.062 4.062 26 C -0.126 4.126 27 C -0.133 4.133 28 N -0.200 5.200 29 N -0.071 5.071 30 N -0.368 5.368 31 C 0.088 3.912 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.407 0.593 36 H 0.039 0.961 37 H 0.048 0.952 38 H 0.065 0.935 39 H 0.040 0.960 40 H 0.096 0.904 41 H -0.002 1.002 42 H 0.252 0.748 43 H 0.088 0.912 44 H 0.036 0.964 45 H 0.062 0.938 46 H 0.050 0.950 47 H 0.048 0.952 48 H 0.060 0.940 49 H 0.088 0.912 50 H 0.095 0.905 51 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.341 -18.823 7.131 22.190 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.241 4.241 4 C 0.386 3.614 5 O -0.421 6.421 6 N -0.342 5.342 7 C 0.034 3.966 8 H 0.128 0.872 9 C -0.186 4.186 10 H 0.117 0.883 11 C -0.126 4.126 12 C -0.160 4.160 13 C 0.031 3.969 14 N -0.291 5.291 15 C -0.362 4.362 16 H 0.083 0.917 17 C -0.197 4.197 18 N -0.540 5.540 19 Si 0.726 3.274 20 H -0.210 1.210 21 H -0.218 1.218 22 H -0.213 1.213 23 C 0.037 3.963 24 H 0.070 0.930 25 C -0.063 4.063 26 C -0.183 4.183 27 C -0.190 4.190 28 N -0.074 5.074 29 N -0.051 5.051 30 N -0.154 5.154 31 C -0.053 4.053 32 H 0.109 0.891 33 H 0.091 0.909 34 H 0.132 0.868 35 H 0.243 0.757 36 H 0.058 0.942 37 H 0.067 0.933 38 H 0.083 0.917 39 H 0.058 0.942 40 H 0.114 0.886 41 H 0.016 0.984 42 H 0.062 0.938 43 H 0.107 0.893 44 H 0.055 0.945 45 H 0.080 0.920 46 H 0.069 0.931 47 H 0.067 0.933 48 H 0.079 0.921 49 H 0.106 0.894 50 H 0.114 0.886 51 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -8.543 -18.964 6.959 21.932 hybrid contribution 0.310 0.351 -0.122 0.484 sum -8.233 -18.613 6.837 21.470 Atomic orbital electron populations 1.20710 0.84664 1.05318 1.04654 1.21931 0.96231 0.86337 0.97291 1.21387 0.88881 0.95816 1.18000 1.16727 0.85802 0.82355 0.76507 1.90734 1.15912 1.83566 1.51883 1.45864 1.09970 1.05928 1.72438 1.22615 0.98353 0.77184 0.98413 0.87163 1.23407 1.00418 0.99708 0.95056 0.88267 1.21131 0.96720 0.97535 0.97219 1.21790 0.99104 0.97353 0.97731 1.21055 0.91349 0.94185 0.90337 1.43962 1.13661 1.46562 1.24904 1.18879 0.90595 1.34893 0.91804 0.91654 1.24968 0.97624 1.01183 0.95910 1.69936 1.40496 1.45477 0.98129 0.86479 0.82899 0.81339 0.76707 1.20982 1.21833 1.21266 1.21459 0.94658 0.87958 0.92182 0.93003 1.21829 0.95351 0.94739 0.94410 1.21664 0.94110 1.02601 0.99880 1.21714 1.00974 1.01375 0.94931 1.74614 1.19188 1.04039 1.09523 1.81993 0.95902 1.03552 1.23611 1.50276 1.06557 1.07688 1.50924 1.22133 1.02410 0.76213 1.04554 0.89054 0.90859 0.86815 0.75699 0.94178 0.93307 0.91671 0.94156 0.88588 0.98392 0.93801 0.89331 0.94476 0.91964 0.93099 0.93285 0.92097 0.89393 0.88600 0.88084 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.74 9.38 36.01 0.34 -0.41 16 2 C 0.12 1.33 7.02 -81.87 -0.57 0.76 16 3 C -0.10 -1.45 6.99 -83.55 -0.58 -2.04 16 4 C 0.60 9.58 7.82 -12.48 -0.10 9.48 16 5 O -0.54 -9.34 14.39 5.29 0.08 -9.26 16 6 N -0.69 -11.04 5.33 -58.71 -0.31 -11.35 16 7 C 0.14 2.35 3.43 -71.83 -0.25 2.10 16 8 H 0.11 1.90 7.54 -51.93 -0.39 1.51 16 9 C -0.16 -3.18 2.85 -95.82 -0.27 -3.45 16 10 H 0.10 2.19 5.91 -51.93 -0.31 1.89 16 11 C -0.09 -1.69 6.12 -27.07 -0.17 -1.86 16 12 C -0.12 -2.53 5.90 -26.42 -0.16 -2.69 16 13 C 0.16 3.63 5.81 -2.72 -0.02 3.61 16 14 N -0.57 -13.55 2.92 -168.63 -0.49 -14.05 16 15 C -0.23 -5.99 7.65 -15.06 -0.12 -6.10 16 16 H 0.07 1.68 7.26 -52.49 -0.38 1.29 16 17 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 18 N -0.90 -24.88 11.20 55.49 0.62 -24.26 16 19 Si 0.90 21.29 29.59 -169.99 -5.03 16.26 16 20 H -0.28 -6.67 7.11 56.52 0.40 -6.26 16 21 H -0.29 -7.09 7.11 56.52 0.40 -6.69 16 22 H -0.29 -6.82 7.11 56.52 0.40 -6.42 16 23 C 0.15 2.96 3.03 -72.13 -0.22 2.74 16 24 H 0.05 1.05 8.01 -51.93 -0.42 0.63 16 25 C -0.06 -1.09 1.36 -159.14 -0.22 -1.30 16 26 C -0.13 -2.31 7.32 37.15 0.27 -2.04 16 27 C -0.13 -2.05 9.29 37.16 0.35 -1.70 16 28 N -0.20 -3.02 12.04 32.85 0.40 -2.63 16 29 N -0.07 -0.96 13.78 60.35 0.83 -0.13 16 30 N -0.37 -3.67 4.03 -63.59 -0.26 -3.92 16 31 C 0.09 0.37 11.18 59.85 0.67 1.04 16 32 H 0.09 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.07 0.33 7.84 -51.93 -0.41 -0.07 16 34 H 0.11 1.11 6.43 -51.93 -0.33 0.77 16 35 H 0.41 6.31 7.22 -40.82 -0.29 6.02 16 36 H 0.04 0.75 8.14 -51.93 -0.42 0.32 16 37 H 0.05 0.90 8.05 -51.93 -0.42 0.48 16 38 H 0.06 1.53 8.14 -51.93 -0.42 1.11 16 39 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 40 H 0.10 2.52 5.74 -51.93 -0.30 2.22 16 41 H 0.00 -0.04 8.14 -51.93 -0.42 -0.46 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.09 1.86 5.80 -51.93 -0.30 1.55 16 44 H 0.04 0.58 8.05 -51.93 -0.42 0.16 16 45 H 0.06 1.24 5.96 -51.93 -0.31 0.93 16 46 H 0.05 0.72 8.05 -51.93 -0.42 0.31 16 47 H 0.05 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.09 0.23 8.14 -51.93 -0.42 -0.19 16 50 H 0.10 0.18 7.78 -51.93 -0.40 -0.23 16 51 H 0.10 0.33 8.14 -51.93 -0.42 -0.09 16 LS Contribution 396.07 15.07 5.97 5.97 Total: -1.00 -31.17 396.07 -7.36 -38.53 By element: Atomic # 1 Polarization: 14.78 SS G_CDS: -8.04 Total: 6.74 kcal Atomic # 6 Polarization: -0.77 SS G_CDS: -1.13 Total: -1.90 kcal Atomic # 7 Polarization: -57.12 SS G_CDS: 0.79 Total: -56.34 kcal Atomic # 8 Polarization: -9.34 SS G_CDS: 0.08 Total: -9.26 kcal Atomic # 14 Polarization: 21.29 SS G_CDS: -5.03 Total: 16.26 kcal Total LS contribution 5.97 Total: 5.97 kcal Total: -31.17 -7.36 -38.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087281034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.622 kcal (2) G-P(sol) polarization free energy of solvation -31.168 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.364 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.532 kcal (6) G-S(sol) free energy of system = (1) + (5) 124.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.56 seconds