Wall clock time and date at job start Wed Apr 1 2020 05:14:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.36597 * 126.58110 * 2 1 4 4 C 1.47522 * 125.76861 * 0.04235 * 3 2 1 5 5 O 1.21591 * 120.00079 * 359.70774 * 4 3 2 6 6 N 1.34777 * 119.99447 * 179.71425 * 4 3 2 7 7 C 1.46503 * 119.99543 * 179.97438 * 6 4 3 8 8 H 1.09000 * 113.22282 * 28.30641 * 7 6 4 9 9 C 1.50001 * 114.12674 * 255.49378 * 7 6 4 10 10 H 1.08993 * 112.50767 * 322.39721 * 9 7 6 11 11 C 1.51206 * 126.17154 * 104.79350 * 9 7 6 12 12 C 1.54089 * 106.19422 * 161.42976 * 11 9 7 13 13 C 1.52497 * 112.67027 * 304.56302 * 12 11 9 14 14 N 1.49348 * 111.80885 * 47.04999 * 13 12 11 15 15 C 1.36932 * 123.71849 * 128.22412 * 14 13 12 16 16 H 1.08002 * 119.99795 * 150.56783 * 15 14 13 17 17 C 1.38810 * 120.00753 * 330.56344 * 15 14 13 18 18 N 1.31622 * 119.99653 * 343.02089 * 17 15 14 19 19 Si 1.86803 * 120.00586 * 163.01710 * 17 15 14 20 20 H 1.48505 * 109.46882 * 60.00206 * 19 17 15 21 21 H 1.48494 * 109.47486 * 180.02562 * 19 17 15 22 22 H 1.48503 * 109.46814 * 300.00617 * 19 17 15 23 23 C 1.45377 * 113.10814 * 307.74953 * 14 13 12 24 24 H 1.08998 * 112.09617 * 300.66844 * 23 14 13 25 25 C 1.49965 * 126.21289 * 156.24281 * 23 14 13 26 26 C 1.52994 * 114.08874 * 334.35085 * 25 23 14 27 27 C 1.53003 * 114.08707 * 106.77590 * 25 23 14 28 28 N 1.34399 * 108.45657 * 179.77179 * 3 2 1 29 29 N 1.28760 * 109.52607 * 0.23241 * 28 3 2 30 30 N 1.34818 * 126.57750 * 180.16678 * 2 1 3 31 31 C 1.46503 * 126.59767 * 359.97438 * 30 2 1 32 32 H 1.09003 * 109.46793 * 89.99749 * 1 2 3 33 33 H 1.09002 * 109.47326 * 209.99786 * 1 2 3 34 34 H 1.09001 * 109.47154 * 330.00003 * 1 2 3 35 35 H 0.96996 * 120.00628 * 0.02562 * 6 4 3 36 36 H 1.09001 * 110.10188 * 280.59697 * 11 9 7 37 37 H 1.09000 * 110.10232 * 42.25885 * 11 9 7 38 38 H 1.09002 * 108.84263 * 65.38093 * 12 11 9 39 39 H 1.08997 * 108.84757 * 183.73625 * 12 11 9 40 40 H 1.08998 * 109.00160 * 167.39811 * 13 12 11 41 41 H 1.09000 * 108.99920 * 286.17020 * 13 12 11 42 42 H 0.96995 * 120.00341 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47366 * 61.72636 * 26 25 23 44 44 H 1.08997 * 109.47723 * 181.72853 * 26 25 23 45 45 H 1.09000 * 109.46993 * 301.72956 * 26 25 23 46 46 H 1.09005 * 109.47080 * 59.99434 * 27 25 23 47 47 H 1.08993 * 109.47399 * 179.97438 * 27 25 23 48 48 H 1.09003 * 109.46565 * 300.00234 * 27 25 23 49 49 H 1.08992 * 109.47049 * 270.24625 * 31 30 2 50 50 H 1.09002 * 109.46669 * 30.24109 * 31 30 2 51 51 H 1.08990 * 109.46877 * 150.23921 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5027 0.0009 5 8 0.6860 2.7627 -0.0037 6 7 2.7818 3.4986 0.0066 7 6 2.3376 4.8947 0.0069 8 1 1.3648 5.0361 0.4778 9 6 2.4844 5.5851 -1.3166 10 1 3.3913 5.2888 -1.8435 11 6 1.3671 5.9112 -2.2819 12 6 1.9170 6.9996 -3.2239 13 6 2.4386 8.2192 -2.4716 14 7 3.3191 7.8318 -1.3292 15 6 4.5736 8.3429 -1.1289 16 1 4.9688 8.4270 -0.1274 17 6 5.3374 8.7528 -2.2131 18 7 5.0212 8.3572 -3.4280 19 14 6.8139 9.8660 -1.9480 20 1 7.7902 9.1894 -1.0568 21 1 7.4554 10.1572 -3.2552 22 1 6.3694 11.1368 -1.3212 23 6 2.7045 6.8604 -0.4391 24 1 1.7754 7.2312 -0.0064 25 6 3.4262 5.9091 0.4681 26 6 4.8421 5.5585 0.0063 27 6 3.3472 6.2787 1.9507 28 7 3.5983 0.6788 0.0051 29 7 3.6299 -0.6084 0.0033 30 7 2.3104 -1.0827 -0.0032 31 6 1.8863 -2.4850 -0.0067 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 3.7293 3.2912 0.0098 36 1 1.0949 5.0238 -2.8534 37 1 0.5009 6.2886 -1.7386 38 1 2.7294 6.5763 -3.8146 39 1 1.1216 7.3158 -3.8987 40 1 3.0093 8.8431 -3.1595 41 1 1.5918 8.7924 -2.0942 42 1 5.5546 8.6439 -4.1856 43 1 5.4504 6.4626 -0.0190 44 1 5.2837 4.8428 0.6997 45 1 4.8009 5.1202 -0.9908 46 1 2.3039 6.2940 2.2662 47 1 3.8934 5.5413 2.5387 48 1 3.7873 7.2642 2.1034 49 1 1.7773 -2.8342 1.0200 50 1 0.9312 -2.5743 -0.5242 51 1 2.6349 -3.0895 -0.5186 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087281034.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:31 Heat of formation + Delta-G solvation = 103.682066 kcal Electronic energy + Delta-G solvation = -32303.391875 eV Core-core repulsion = 28241.333838 eV Total energy + Delta-G solvation = -4062.058037 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.47 seconds Orbital eigenvalues (eV) -43.29709 -42.29411 -39.87093 -36.86485 -35.94626 -34.65906 -34.35879 -33.26993 -32.04229 -30.77731 -29.19908 -28.47275 -28.30976 -27.43658 -26.24715 -24.59308 -23.60873 -22.48264 -21.74882 -21.30953 -20.79218 -19.89908 -18.87094 -18.35337 -17.42898 -17.21621 -16.79931 -16.39973 -16.00243 -15.57931 -15.47556 -15.43185 -15.22805 -14.91833 -14.59712 -14.34972 -14.28236 -14.08005 -14.05506 -13.93941 -13.92338 -13.30339 -13.22014 -13.03871 -12.95605 -12.92190 -12.76321 -12.66480 -12.59588 -12.27426 -12.16874 -12.11891 -12.04330 -11.62226 -11.48610 -11.27388 -11.14923 -11.12418 -10.85396 -10.59211 -10.24992 -10.23480 -9.77052 -8.41827 -7.74821 -5.16416 0.12018 0.61024 1.15199 1.49179 1.51569 1.56430 2.19035 2.25069 2.57942 3.19654 3.30034 3.41916 3.44144 3.53658 3.64784 3.77322 3.79251 3.92259 4.13677 4.34518 4.34774 4.41659 4.44293 4.55093 4.61281 4.66719 4.67225 4.69052 4.72263 4.75159 4.81213 4.85217 4.93167 5.02847 5.09140 5.09370 5.15386 5.18689 5.20893 5.31648 5.38180 5.40919 5.52901 5.59171 5.62424 5.65999 5.73823 5.81465 5.91303 6.50451 6.51079 6.90493 7.17616 7.20109 7.91802 8.59140 9.31102 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016952 B = 0.002909 C = 0.002786 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.300536 B = 9622.191329 C =10046.430060 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.133 4.133 4 C 0.603 3.397 5 O -0.558 6.558 6 N -0.694 5.694 7 C 0.159 3.841 8 H 0.118 0.882 9 C -0.158 4.158 10 H 0.067 0.933 11 C -0.082 4.082 12 C -0.110 4.110 13 C 0.155 3.845 14 N -0.584 5.584 15 C -0.224 4.224 16 H 0.066 0.934 17 C -0.049 4.049 18 N -0.923 5.923 19 Si 0.950 3.050 20 H -0.278 1.278 21 H -0.301 1.301 22 H -0.284 1.284 23 C 0.134 3.866 24 H 0.062 0.938 25 C -0.058 4.058 26 C -0.116 4.116 27 C -0.127 4.127 28 N -0.228 5.228 29 N -0.096 5.096 30 N -0.354 5.354 31 C 0.072 3.928 32 H 0.103 0.897 33 H 0.114 0.886 34 H 0.096 0.904 35 H 0.408 0.592 36 H 0.046 0.954 37 H 0.064 0.936 38 H 0.031 0.969 39 H 0.060 0.940 40 H 0.064 0.936 41 H 0.009 0.991 42 H 0.244 0.756 43 H 0.060 0.940 44 H 0.063 0.937 45 H 0.039 0.961 46 H 0.066 0.934 47 H 0.065 0.935 48 H 0.052 0.948 49 H 0.110 0.890 50 H 0.127 0.873 51 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.222 -21.200 8.929 25.595 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.274 4.274 4 C 0.389 3.611 5 O -0.437 6.437 6 N -0.343 5.343 7 C 0.054 3.946 8 H 0.136 0.864 9 C -0.179 4.179 10 H 0.085 0.915 11 C -0.119 4.119 12 C -0.149 4.149 13 C 0.030 3.970 14 N -0.306 5.306 15 C -0.354 4.354 16 H 0.083 0.917 17 C -0.244 4.244 18 N -0.570 5.570 19 Si 0.780 3.220 20 H -0.204 1.204 21 H -0.228 1.228 22 H -0.211 1.211 23 C 0.026 3.974 24 H 0.079 0.921 25 C -0.059 4.059 26 C -0.173 4.173 27 C -0.184 4.184 28 N -0.101 5.101 29 N -0.075 5.075 30 N -0.140 5.140 31 C -0.067 4.067 32 H 0.121 0.879 33 H 0.132 0.868 34 H 0.114 0.886 35 H 0.244 0.756 36 H 0.064 0.936 37 H 0.083 0.917 38 H 0.050 0.950 39 H 0.079 0.921 40 H 0.082 0.918 41 H 0.027 0.973 42 H 0.053 0.947 43 H 0.079 0.921 44 H 0.082 0.918 45 H 0.058 0.942 46 H 0.085 0.915 47 H 0.084 0.916 48 H 0.071 0.929 49 H 0.129 0.871 50 H 0.146 0.854 51 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -10.421 -21.387 8.784 25.361 hybrid contribution 0.810 0.954 -0.669 1.419 sum -9.611 -20.433 8.115 23.995 Atomic orbital electron populations 1.20832 0.82091 1.06440 1.05640 1.22371 0.97500 0.85681 0.95183 1.21350 0.89571 0.95773 1.20670 1.16921 0.85475 0.82994 0.75726 1.90716 1.16333 1.84030 1.52581 1.45780 1.10176 1.05543 1.72791 1.22295 0.98254 0.77763 0.96254 0.86428 1.23246 0.99189 0.99843 0.95648 0.91465 1.21067 0.96937 0.97011 0.96915 1.21635 0.98534 0.96919 0.97801 1.20992 0.91099 0.94912 0.90004 1.44122 1.13288 1.47564 1.25607 1.19063 0.91125 1.33631 0.91597 0.91674 1.25560 1.00058 1.02903 0.95903 1.70094 1.41503 1.46904 0.98496 0.85602 0.80548 0.79849 0.76016 1.20375 1.22758 1.21079 1.21707 0.95278 0.87530 0.92902 0.92087 1.21779 0.94636 0.93901 0.95567 1.21515 0.94658 1.01683 0.99481 1.21669 1.02279 1.01333 0.93136 1.74574 1.20005 1.04935 1.10542 1.81879 0.98055 1.03067 1.24515 1.50627 1.05197 1.09401 1.48756 1.22719 1.04124 0.73126 1.06686 0.87898 0.86802 0.88591 0.75558 0.93576 0.91700 0.95003 0.92111 0.91780 0.97304 0.94726 0.92073 0.91828 0.94174 0.91533 0.91574 0.92936 0.87141 0.85437 0.87207 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.13 9.38 71.24 0.67 -0.46 16 2 C 0.13 2.64 7.02 41.72 0.29 2.93 16 3 C -0.13 -3.70 6.99 40.82 0.29 -3.42 16 4 C 0.60 18.68 7.82 86.69 0.68 19.35 16 5 O -0.56 -18.40 14.39 -4.00 -0.06 -18.46 16 6 N -0.69 -21.73 5.33 -457.91 -2.44 -24.17 16 7 C 0.16 5.24 3.43 42.47 0.15 5.38 16 8 H 0.12 3.80 7.54 -2.39 -0.02 3.78 16 9 C -0.16 -6.11 2.85 -14.16 -0.04 -6.15 16 10 H 0.07 3.08 5.91 -2.39 -0.01 3.07 16 11 C -0.08 -3.08 6.12 30.38 0.19 -2.90 16 12 C -0.11 -4.67 5.90 30.80 0.18 -4.49 16 13 C 0.15 7.37 5.81 85.66 0.50 7.87 16 14 N -0.58 -28.28 2.92 -687.41 -2.01 -30.29 16 15 C -0.22 -11.78 7.65 84.03 0.64 -11.14 16 16 H 0.07 3.38 7.26 -2.91 -0.02 3.36 16 17 C -0.05 -2.67 5.10 84.86 0.43 -2.24 16 18 N -0.92 -53.48 11.20 21.65 0.24 -53.23 16 19 Si 0.95 44.91 29.59 68.60 2.03 46.94 16 20 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 21 H -0.30 -14.54 7.11 99.48 0.71 -13.83 16 22 H -0.28 -13.22 7.11 99.48 0.71 -12.52 16 23 C 0.13 5.36 3.03 42.87 0.13 5.49 16 24 H 0.06 2.37 8.01 -2.39 -0.02 2.35 16 25 C -0.06 -1.98 1.36 -55.18 -0.08 -2.05 16 26 C -0.12 -4.32 7.32 71.98 0.53 -3.79 16 27 C -0.13 -3.66 9.29 71.98 0.67 -2.99 16 28 N -0.23 -6.81 12.04 -50.00 -0.60 -7.41 16 29 N -0.10 -2.49 13.78 37.02 0.51 -1.98 16 30 N -0.35 -6.15 4.03 -355.11 -1.43 -7.59 16 31 C 0.07 0.33 11.18 127.77 1.43 1.76 16 32 H 0.10 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.11 0.47 7.84 -2.39 -0.02 0.45 16 34 H 0.10 1.63 6.43 -2.39 -0.02 1.62 16 35 H 0.41 12.66 7.22 -92.71 -0.67 11.99 16 36 H 0.05 1.68 8.14 -2.39 -0.02 1.66 16 37 H 0.06 2.26 8.05 -2.39 -0.02 2.24 16 38 H 0.03 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.06 2.29 8.14 -2.39 -0.02 2.27 16 40 H 0.06 3.50 5.74 -2.39 -0.01 3.48 16 41 H 0.01 0.41 8.14 -2.39 -0.02 0.39 16 42 H 0.24 13.98 8.31 -92.71 -0.77 13.21 16 43 H 0.06 2.61 5.80 -2.39 -0.01 2.60 16 44 H 0.06 1.97 8.05 -2.39 -0.02 1.95 16 45 H 0.04 1.65 5.96 -2.39 -0.01 1.64 16 46 H 0.07 1.71 8.05 -2.38 -0.02 1.69 16 47 H 0.07 1.68 8.14 -2.39 -0.02 1.66 16 48 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 49 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 50 H 0.13 -0.17 7.78 -2.39 -0.02 -0.19 16 51 H 0.11 0.37 8.14 -2.39 -0.02 0.35 16 Total: -1.00 -70.74 396.07 3.17 -67.57 By element: Atomic # 1 Polarization: 25.18 SS G_CDS: 0.28 Total: 25.46 kcal Atomic # 6 Polarization: -3.49 SS G_CDS: 6.65 Total: 3.16 kcal Atomic # 7 Polarization: -118.93 SS G_CDS: -5.73 Total: -124.66 kcal Atomic # 8 Polarization: -18.40 SS G_CDS: -0.06 Total: -18.46 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -70.74 3.17 -67.57 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087281034.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.249 kcal (2) G-P(sol) polarization free energy of solvation -70.739 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.510 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.567 kcal (6) G-S(sol) free energy of system = (1) + (5) 103.682 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.47 seconds