Wall clock time and date at job start Wed Apr 1 2020 05:14:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.58422 * 2 1 4 4 C 1.47521 * 125.76669 * 359.97372 * 3 2 1 5 5 O 1.21594 * 120.00149 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00098 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00110 * 179.97438 * 6 4 3 8 8 H 1.08998 * 112.92608 * 26.82076 * 7 6 4 9 9 C 1.54151 * 113.63739 * 255.49685 * 7 6 4 10 10 H 1.08996 * 114.24956 * 104.29071 * 9 7 6 11 11 C 1.53065 * 112.17800 * 333.56557 * 9 7 6 12 12 C 1.50346 * 110.84566 * 215.29075 * 11 9 7 13 13 C 1.52947 * 109.59784 * 63.07697 * 12 11 9 14 14 N 1.45888 * 109.89022 * 303.43928 * 13 12 11 15 15 C 1.36934 * 118.48799 * 219.36129 * 14 13 12 16 16 H 1.07997 * 120.00150 * 152.37038 * 15 14 13 17 17 C 1.38814 * 119.99697 * 332.37079 * 15 14 13 18 18 N 1.31615 * 120.00013 * 344.43912 * 17 15 14 19 19 Si 1.86803 * 119.99900 * 164.43180 * 17 15 14 20 20 H 1.48500 * 109.46800 * 90.00162 * 19 17 15 21 21 H 1.48496 * 109.46807 * 210.00005 * 19 17 15 22 22 H 1.48491 * 109.47298 * 330.00277 * 19 17 15 23 23 C 1.45099 * 123.03142 * 39.33927 * 14 13 12 24 24 H 1.08997 * 112.25371 * 202.90885 * 23 14 13 25 25 C 1.53387 * 113.74508 * 73.26314 * 23 14 13 26 26 C 1.53000 * 113.68606 * 331.26482 * 25 23 14 27 27 C 1.53001 * 113.68650 * 102.30501 * 25 23 14 28 28 N 1.34399 * 108.46143 * 180.23685 * 3 2 1 29 29 N 1.28766 * 109.51847 * 359.58887 * 28 3 2 30 30 N 1.34823 * 126.58031 * 179.97438 * 2 1 3 31 31 C 1.46500 * 126.59335 * 0.02562 * 30 2 1 32 32 H 1.09006 * 109.46798 * 90.00517 * 1 2 3 33 33 H 1.09000 * 109.47460 * 209.99978 * 1 2 3 34 34 H 1.08997 * 109.47142 * 330.00810 * 1 2 3 35 35 H 0.96994 * 119.99688 * 0.02562 * 6 4 3 36 36 H 1.08992 * 109.48142 * 334.03175 * 11 9 7 37 37 H 1.09003 * 109.47849 * 94.07528 * 11 9 7 38 38 H 1.09001 * 108.59080 * 303.42749 * 12 11 9 39 39 H 1.08998 * 109.95848 * 183.56761 * 12 11 9 40 40 H 1.08993 * 109.39907 * 183.31110 * 13 12 11 41 41 H 1.08996 * 109.32627 * 63.52056 * 13 12 11 42 42 H 0.97002 * 120.00318 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47086 * 90.70666 * 26 25 23 44 44 H 1.08995 * 109.46968 * 210.70445 * 26 25 23 45 45 H 1.09000 * 109.47433 * 330.70713 * 26 25 23 46 46 H 1.08996 * 109.46862 * 59.99882 * 27 25 23 47 47 H 1.09001 * 109.46735 * 179.97438 * 27 25 23 48 48 H 1.08999 * 109.47045 * 300.00122 * 27 25 23 49 49 H 1.09003 * 109.47232 * 89.99744 * 31 30 2 50 50 H 1.08995 * 109.47328 * 209.99710 * 31 30 2 51 51 H 1.09005 * 109.46956 * 329.99949 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5026 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7818 3.4987 -0.0010 7 6 2.3376 4.8947 -0.0021 8 1 1.3551 5.0280 0.4505 9 6 2.4876 5.5900 -1.3697 10 1 1.5512 5.7158 -1.9131 11 6 3.6000 4.9662 -2.2161 12 6 4.3051 6.0152 -3.0301 13 6 4.9886 7.0155 -2.0965 14 7 4.0065 7.5981 -1.1886 15 6 4.1031 8.9309 -0.8898 16 1 3.2189 9.4895 -0.6206 17 6 5.3377 9.5641 -0.9329 18 7 6.4431 8.8500 -0.9554 19 14 5.4302 11.4296 -0.9592 20 1 5.4945 11.9417 0.4333 21 1 6.6453 11.8545 -1.6995 22 1 4.2243 11.9756 -1.6321 23 6 2.9317 6.8305 -0.5878 24 1 2.0956 7.4597 -0.2826 25 6 3.3972 5.8797 0.5221 26 6 4.8349 5.3868 0.3463 27 6 3.1136 6.3972 1.9338 28 7 3.5984 0.6788 -0.0053 29 7 3.6298 -0.6085 0.0002 30 7 2.3105 -1.0827 0.0005 31 6 1.8864 -2.4849 0.0006 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 3.7293 3.2912 -0.0014 36 1 4.3377 4.5018 -1.5617 37 1 3.1739 4.2116 -2.8773 38 1 3.5676 6.5333 -3.6431 39 1 5.0508 5.5481 -3.6734 40 1 5.4489 7.8068 -2.6881 41 1 5.7568 6.5023 -1.5181 42 1 7.3058 9.2924 -0.9859 43 1 5.5169 6.0652 0.8590 44 1 4.9306 4.3870 0.7696 45 1 5.0817 5.3572 -0.7150 46 1 2.0405 6.5415 2.0589 47 1 3.4700 5.6717 2.6651 48 1 3.6277 7.3467 2.0828 49 1 1.7815 -2.8329 -1.0271 50 1 2.6329 -3.0903 0.5147 51 1 0.9291 -2.5750 0.5141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087281037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:47 Heat of formation + Delta-G solvation = 120.879701 kcal Electronic energy + Delta-G solvation = -32513.336338 eV Core-core repulsion = 28452.024046 eV Total energy + Delta-G solvation = -4061.312292 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -42.41777 -40.85914 -38.62294 -35.28982 -35.06655 -33.02648 -32.86839 -32.48700 -30.25061 -29.92171 -28.40566 -27.74527 -26.80038 -25.45038 -24.78957 -23.29536 -22.29569 -21.54991 -20.85256 -20.00581 -19.28831 -18.16004 -17.25238 -16.84863 -16.64769 -16.03607 -15.67626 -14.95702 -14.78718 -14.58044 -14.42291 -14.23506 -13.90534 -13.68993 -13.45966 -13.32361 -13.21642 -13.14268 -12.81955 -12.59667 -12.44853 -12.24274 -12.11166 -11.87783 -11.48021 -11.34365 -11.30484 -11.07303 -10.96897 -10.76184 -10.65868 -10.44303 -10.33776 -10.20714 -10.03243 -9.92373 -9.64027 -9.48135 -9.32473 -9.24507 -9.06493 -8.46792 -8.29932 -6.56653 -5.72945 -3.16970 0.93270 1.65209 1.79608 3.35101 3.36959 3.40062 3.47536 3.49864 4.01449 4.08978 4.36838 4.52694 4.53926 4.62801 4.81261 5.01725 5.08876 5.14392 5.17826 5.37315 5.39375 5.41148 5.54542 5.55834 5.68596 5.74622 5.76236 5.93751 6.04026 6.10773 6.16996 6.22199 6.27912 6.31591 6.37410 6.53194 6.55348 6.65570 6.68365 6.75329 6.81965 6.87609 6.91840 7.08992 7.15656 7.30750 7.48201 7.66202 7.79204 7.88493 7.90994 8.37099 8.51724 9.30535 9.95818 10.40286 11.33116 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002717 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.872056 B =10301.951842 C =10530.023814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.102 4.102 4 C 0.602 3.398 5 O -0.545 6.545 6 N -0.691 5.691 7 C 0.126 3.874 8 H 0.108 0.892 9 C -0.129 4.129 10 H 0.071 0.929 11 C -0.101 4.101 12 C -0.146 4.146 13 C 0.178 3.822 14 N -0.568 5.568 15 C -0.260 4.260 16 H 0.064 0.936 17 C 0.008 3.992 18 N -0.900 5.900 19 Si 0.898 3.102 20 H -0.288 1.288 21 H -0.291 1.291 22 H -0.281 1.281 23 C 0.188 3.812 24 H 0.077 0.923 25 C -0.111 4.111 26 C -0.140 4.140 27 C -0.125 4.125 28 N -0.200 5.200 29 N -0.070 5.070 30 N -0.368 5.368 31 C 0.088 3.912 32 H 0.091 0.909 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.408 0.592 36 H 0.072 0.928 37 H 0.042 0.958 38 H 0.050 0.950 39 H 0.052 0.948 40 H 0.066 0.934 41 H 0.040 0.960 42 H 0.252 0.748 43 H 0.066 0.934 44 H 0.030 0.970 45 H 0.094 0.906 46 H 0.045 0.955 47 H 0.039 0.961 48 H 0.064 0.936 49 H 0.088 0.912 50 H 0.100 0.900 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.332 -21.221 1.686 23.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.241 4.241 4 C 0.385 3.615 5 O -0.423 6.423 6 N -0.341 5.341 7 C 0.021 3.979 8 H 0.126 0.874 9 C -0.151 4.151 10 H 0.090 0.910 11 C -0.139 4.139 12 C -0.185 4.185 13 C 0.054 3.946 14 N -0.285 5.285 15 C -0.390 4.390 16 H 0.082 0.918 17 C -0.191 4.191 18 N -0.544 5.544 19 Si 0.728 3.272 20 H -0.215 1.215 21 H -0.217 1.217 22 H -0.206 1.206 23 C 0.077 3.923 24 H 0.094 0.906 25 C -0.115 4.115 26 C -0.196 4.196 27 C -0.183 4.183 28 N -0.074 5.074 29 N -0.050 5.050 30 N -0.154 5.154 31 C -0.053 4.053 32 H 0.110 0.890 33 H 0.091 0.909 34 H 0.131 0.869 35 H 0.246 0.754 36 H 0.091 0.909 37 H 0.061 0.939 38 H 0.069 0.931 39 H 0.071 0.929 40 H 0.085 0.915 41 H 0.058 0.942 42 H 0.062 0.938 43 H 0.085 0.915 44 H 0.049 0.951 45 H 0.112 0.888 46 H 0.064 0.936 47 H 0.058 0.942 48 H 0.083 0.917 49 H 0.107 0.893 50 H 0.119 0.881 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.468 -21.387 1.649 23.447 hybrid contribution -0.355 0.770 0.065 0.850 sum -9.822 -20.617 1.714 22.901 Atomic orbital electron populations 1.20713 0.84669 1.05292 1.04633 1.21926 0.96225 0.86347 0.97304 1.21369 0.88897 0.95776 1.18106 1.16756 0.85803 0.82432 0.76460 1.90730 1.15957 1.83599 1.52006 1.45900 1.10099 1.05833 1.72230 1.22905 0.99220 0.77796 0.97945 0.87371 1.23213 0.98584 0.98044 0.95218 0.91049 1.20953 0.97084 0.97628 0.98203 1.21605 0.99491 0.98296 0.99065 1.20641 0.89879 0.94129 0.89977 1.43176 1.29875 1.06369 1.49114 1.19200 0.92354 0.84653 1.42748 0.91807 1.24992 0.95564 0.97672 1.00866 1.70049 0.96686 1.33703 1.53997 0.86368 0.77031 0.86178 0.77588 1.21529 1.21716 1.20608 1.21068 0.91743 0.89315 0.90160 0.90553 1.23020 0.94665 0.96669 0.97154 1.22046 0.94853 0.98158 1.04551 1.21612 1.00226 1.01062 0.95389 1.74622 1.19158 1.04056 1.09518 1.82000 0.95869 1.03530 1.23579 1.50276 1.06561 1.07700 1.50843 1.22143 1.02357 0.76185 1.04646 0.89042 0.90866 0.86850 0.75382 0.90943 0.93901 0.93090 0.92943 0.91537 0.94215 0.93766 0.91536 0.95126 0.88829 0.93592 0.94175 0.91692 0.89307 0.88116 0.88612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.71 9.57 36.00 0.34 -0.36 16 2 C 0.12 1.29 7.02 -81.87 -0.57 0.72 16 3 C -0.10 -1.42 6.99 -83.55 -0.58 -2.01 16 4 C 0.60 9.32 7.82 -12.47 -0.10 9.22 16 5 O -0.55 -9.10 14.36 5.28 0.08 -9.03 16 6 N -0.69 -10.77 4.34 -53.83 -0.23 -11.01 16 7 C 0.13 2.09 3.58 -66.88 -0.24 1.85 16 8 H 0.11 1.81 7.37 -51.93 -0.38 1.43 16 9 C -0.13 -2.30 4.31 -89.87 -0.39 -2.69 16 10 H 0.07 1.26 8.14 -51.93 -0.42 0.83 16 11 C -0.10 -1.77 4.57 -28.02 -0.13 -1.90 16 12 C -0.15 -2.78 5.92 -28.08 -0.17 -2.95 16 13 C 0.18 4.10 3.99 -4.40 -0.02 4.09 16 14 N -0.57 -13.39 2.64 -166.86 -0.44 -13.83 16 15 C -0.26 -6.84 9.45 -15.06 -0.14 -6.98 16 16 H 0.06 1.67 7.85 -52.49 -0.41 1.26 16 17 C 0.01 0.21 4.86 -17.43 -0.08 0.13 16 18 N -0.90 -25.11 11.10 55.49 0.62 -24.49 16 19 Si 0.90 21.44 29.58 -169.99 -5.03 16.41 16 20 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 21 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 C 0.19 3.79 3.58 -68.38 -0.24 3.55 16 24 H 0.08 1.55 7.95 -51.93 -0.41 1.14 16 25 C -0.11 -2.01 1.34 -153.85 -0.21 -2.21 16 26 C -0.14 -2.63 6.71 37.16 0.25 -2.38 16 27 C -0.13 -2.18 9.16 37.16 0.34 -1.84 16 28 N -0.20 -2.96 12.04 32.85 0.40 -2.57 16 29 N -0.07 -0.93 13.78 60.35 0.83 -0.10 16 30 N -0.37 -3.54 4.03 -63.59 -0.26 -3.80 16 31 C 0.09 0.35 11.33 59.85 0.68 1.02 16 32 H 0.09 0.61 8.14 -51.93 -0.42 0.18 16 33 H 0.07 0.31 7.18 -51.93 -0.37 -0.07 16 34 H 0.11 1.07 6.43 -51.93 -0.33 0.73 16 35 H 0.41 6.33 5.41 -40.82 -0.22 6.11 16 36 H 0.07 1.27 3.76 -51.93 -0.20 1.07 16 37 H 0.04 0.71 8.14 -51.93 -0.42 0.29 16 38 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 39 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.72 6.61 -51.93 -0.34 1.38 16 41 H 0.04 0.97 5.54 -51.93 -0.29 0.68 16 42 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 43 H 0.07 1.43 8.09 -51.93 -0.42 1.01 16 44 H 0.03 0.51 6.54 -51.93 -0.34 0.17 16 45 H 0.09 1.84 1.93 -51.93 -0.10 1.74 16 46 H 0.04 0.72 7.95 -51.93 -0.41 0.31 16 47 H 0.04 0.64 8.14 -51.93 -0.42 0.22 16 48 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 49 H 0.09 0.22 8.14 -51.93 -0.42 -0.20 16 50 H 0.10 0.30 8.14 -51.93 -0.42 -0.12 16 51 H 0.10 0.14 7.16 -51.93 -0.37 -0.23 16 LS Contribution 384.77 15.07 5.80 5.80 Total: -1.00 -31.29 384.77 -7.05 -38.34 By element: Atomic # 1 Polarization: 14.58 SS G_CDS: -7.55 Total: 7.03 kcal Atomic # 6 Polarization: -1.50 SS G_CDS: -1.26 Total: -2.76 kcal Atomic # 7 Polarization: -56.71 SS G_CDS: 0.91 Total: -55.79 kcal Atomic # 8 Polarization: -9.10 SS G_CDS: 0.08 Total: -9.03 kcal Atomic # 14 Polarization: 21.44 SS G_CDS: -5.03 Total: 16.41 kcal Total LS contribution 5.80 Total: 5.80 kcal Total: -31.29 -7.05 -38.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087281037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 159.219 kcal (2) G-P(sol) polarization free energy of solvation -31.291 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.928 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.340 kcal (6) G-S(sol) free energy of system = (1) + (5) 120.880 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds