Wall clock time and date at job start Wed Apr 1 2020 05:14:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 C 1.36598 * 126.58422 * 2 1 4 4 C 1.47521 * 125.76669 * 359.97372 * 3 2 1 5 5 O 1.21594 * 120.00149 * 359.97438 * 4 3 2 6 6 N 1.34780 * 120.00098 * 180.02562 * 4 3 2 7 7 C 1.46497 * 120.00110 * 179.97438 * 6 4 3 8 8 H 1.08998 * 112.92608 * 26.82076 * 7 6 4 9 9 C 1.54151 * 113.63739 * 255.49685 * 7 6 4 10 10 H 1.08996 * 114.24956 * 104.29071 * 9 7 6 11 11 C 1.53065 * 112.17800 * 333.56557 * 9 7 6 12 12 C 1.50346 * 110.84566 * 215.29075 * 11 9 7 13 13 C 1.52947 * 109.59784 * 63.07697 * 12 11 9 14 14 N 1.45888 * 109.89022 * 303.43928 * 13 12 11 15 15 C 1.36934 * 118.48799 * 219.36129 * 14 13 12 16 16 H 1.07997 * 120.00150 * 152.37038 * 15 14 13 17 17 C 1.38814 * 119.99697 * 332.37079 * 15 14 13 18 18 N 1.31615 * 120.00013 * 344.43912 * 17 15 14 19 19 Si 1.86803 * 119.99900 * 164.43180 * 17 15 14 20 20 H 1.48500 * 109.46800 * 90.00162 * 19 17 15 21 21 H 1.48496 * 109.46807 * 210.00005 * 19 17 15 22 22 H 1.48491 * 109.47298 * 330.00277 * 19 17 15 23 23 C 1.45099 * 123.03142 * 39.33927 * 14 13 12 24 24 H 1.08997 * 112.25371 * 202.90885 * 23 14 13 25 25 C 1.53387 * 113.74508 * 73.26314 * 23 14 13 26 26 C 1.53000 * 113.68606 * 331.26482 * 25 23 14 27 27 C 1.53001 * 113.68650 * 102.30501 * 25 23 14 28 28 N 1.34399 * 108.46143 * 180.23685 * 3 2 1 29 29 N 1.28766 * 109.51847 * 359.58887 * 28 3 2 30 30 N 1.34823 * 126.58031 * 179.97438 * 2 1 3 31 31 C 1.46500 * 126.59335 * 0.02562 * 30 2 1 32 32 H 1.09006 * 109.46798 * 90.00517 * 1 2 3 33 33 H 1.09000 * 109.47460 * 209.99978 * 1 2 3 34 34 H 1.08997 * 109.47142 * 330.00810 * 1 2 3 35 35 H 0.96994 * 119.99688 * 0.02562 * 6 4 3 36 36 H 1.08992 * 109.48142 * 334.03175 * 11 9 7 37 37 H 1.09003 * 109.47849 * 94.07528 * 11 9 7 38 38 H 1.09001 * 108.59080 * 303.42749 * 12 11 9 39 39 H 1.08998 * 109.95848 * 183.56761 * 12 11 9 40 40 H 1.08993 * 109.39907 * 183.31110 * 13 12 11 41 41 H 1.08996 * 109.32627 * 63.52056 * 13 12 11 42 42 H 0.97002 * 120.00318 * 179.97438 * 18 17 15 43 43 H 1.09004 * 109.47086 * 90.70666 * 26 25 23 44 44 H 1.08995 * 109.46968 * 210.70445 * 26 25 23 45 45 H 1.09000 * 109.47433 * 330.70713 * 26 25 23 46 46 H 1.08996 * 109.46862 * 59.99882 * 27 25 23 47 47 H 1.09001 * 109.46735 * 179.97438 * 27 25 23 48 48 H 1.08999 * 109.47045 * 300.00122 * 27 25 23 49 49 H 1.09003 * 109.47232 * 89.99744 * 31 30 2 50 50 H 1.08995 * 109.47328 * 209.99710 * 31 30 2 51 51 H 1.09005 * 109.46956 * 329.99949 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8738 2.5026 -0.0005 5 8 0.6860 2.7628 -0.0015 6 7 2.7818 3.4987 -0.0010 7 6 2.3376 4.8947 -0.0021 8 1 1.3551 5.0280 0.4505 9 6 2.4876 5.5900 -1.3697 10 1 1.5512 5.7158 -1.9131 11 6 3.6000 4.9662 -2.2161 12 6 4.3051 6.0152 -3.0301 13 6 4.9886 7.0155 -2.0965 14 7 4.0065 7.5981 -1.1886 15 6 4.1031 8.9309 -0.8898 16 1 3.2189 9.4895 -0.6206 17 6 5.3377 9.5641 -0.9329 18 7 6.4431 8.8500 -0.9554 19 14 5.4302 11.4296 -0.9592 20 1 5.4945 11.9417 0.4333 21 1 6.6453 11.8545 -1.6995 22 1 4.2243 11.9756 -1.6321 23 6 2.9317 6.8305 -0.5878 24 1 2.0956 7.4597 -0.2826 25 6 3.3972 5.8797 0.5221 26 6 4.8349 5.3868 0.3463 27 6 3.1136 6.3972 1.9338 28 7 3.5984 0.6788 -0.0053 29 7 3.6298 -0.6085 0.0002 30 7 2.3105 -1.0827 0.0005 31 6 1.8864 -2.4849 0.0006 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5137 35 1 3.7293 3.2912 -0.0014 36 1 4.3377 4.5018 -1.5617 37 1 3.1739 4.2116 -2.8773 38 1 3.5676 6.5333 -3.6431 39 1 5.0508 5.5481 -3.6734 40 1 5.4489 7.8068 -2.6881 41 1 5.7568 6.5023 -1.5181 42 1 7.3058 9.2924 -0.9859 43 1 5.5169 6.0652 0.8590 44 1 4.9306 4.3870 0.7696 45 1 5.0817 5.3572 -0.7150 46 1 2.0405 6.5415 2.0589 47 1 3.4700 5.6717 2.6651 48 1 3.6277 7.3467 2.0828 49 1 1.7815 -2.8329 -1.0271 50 1 2.6329 -3.0903 0.5147 51 1 0.9291 -2.5750 0.5141 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087281037.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:46 Heat of formation + Delta-G solvation = 100.949758 kcal Electronic energy + Delta-G solvation = -32514.200565 eV Core-core repulsion = 28452.024046 eV Total energy + Delta-G solvation = -4062.176519 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -43.29315 -42.33745 -39.87444 -36.86244 -35.93745 -34.61503 -34.33380 -33.26236 -32.11129 -31.46990 -29.19519 -28.32270 -28.30082 -27.21020 -26.28737 -24.59171 -23.85358 -22.77203 -21.81570 -21.26320 -20.78586 -19.38962 -18.70630 -18.60851 -17.43256 -17.12621 -16.90881 -16.54205 -16.33739 -15.96291 -15.62071 -15.30522 -15.20050 -14.87499 -14.77171 -14.33297 -14.19238 -14.06824 -14.00930 -13.93867 -13.78609 -13.48622 -13.22502 -13.06099 -12.95445 -12.90738 -12.79433 -12.76133 -12.48471 -12.41409 -12.16887 -12.08977 -11.95422 -11.56314 -11.42936 -11.15733 -11.13962 -11.01977 -10.90524 -10.68422 -10.30591 -10.22409 -9.76174 -8.49940 -7.76899 -5.22620 0.13319 0.61720 1.15970 1.47415 1.49874 1.58005 2.19600 2.24869 2.56650 3.20342 3.35279 3.46920 3.58110 3.64446 3.69754 3.77190 3.84919 3.93564 4.07332 4.25602 4.32146 4.40376 4.43746 4.51687 4.60411 4.66824 4.68412 4.69034 4.69239 4.74850 4.84278 4.88309 4.90445 4.97929 5.06838 5.10358 5.13205 5.16915 5.19174 5.31824 5.36254 5.43061 5.53137 5.57318 5.61100 5.64175 5.73526 5.76553 5.99561 6.47650 6.50596 6.91285 7.18466 7.28031 8.05028 8.41872 9.25894 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024073 B = 0.002717 C = 0.002658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.872056 B =10301.951842 C =10530.023814 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.092 4.092 2 C 0.132 3.868 3 C -0.133 4.133 4 C 0.604 3.396 5 O -0.559 6.559 6 N -0.692 5.692 7 C 0.148 3.852 8 H 0.114 0.886 9 C -0.124 4.124 10 H 0.078 0.922 11 C -0.095 4.095 12 C -0.135 4.135 13 C 0.189 3.811 14 N -0.579 5.579 15 C -0.264 4.264 16 H 0.061 0.939 17 C -0.041 4.041 18 N -0.926 5.926 19 Si 0.956 3.044 20 H -0.288 1.288 21 H -0.296 1.296 22 H -0.275 1.275 23 C 0.172 3.828 24 H 0.073 0.927 25 C -0.109 4.109 26 C -0.129 4.129 27 C -0.120 4.120 28 N -0.227 5.227 29 N -0.095 5.095 30 N -0.354 5.354 31 C 0.072 3.928 32 H 0.104 0.896 33 H 0.113 0.887 34 H 0.094 0.906 35 H 0.409 0.591 36 H 0.073 0.927 37 H 0.060 0.940 38 H 0.048 0.952 39 H 0.070 0.930 40 H 0.029 0.971 41 H 0.022 0.978 42 H 0.246 0.754 43 H 0.031 0.969 44 H 0.052 0.948 45 H 0.086 0.914 46 H 0.063 0.937 47 H 0.052 0.948 48 H 0.037 0.963 49 H 0.108 0.892 50 H 0.110 0.890 51 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.715 -24.052 1.693 27.259 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.007 4.007 3 C -0.273 4.273 4 C 0.390 3.610 5 O -0.438 6.438 6 N -0.341 5.341 7 C 0.042 3.958 8 H 0.131 0.869 9 C -0.145 4.145 10 H 0.097 0.903 11 C -0.132 4.132 12 C -0.174 4.174 13 C 0.064 3.936 14 N -0.298 5.298 15 C -0.395 4.395 16 H 0.079 0.921 17 C -0.237 4.237 18 N -0.572 5.572 19 Si 0.785 3.215 20 H -0.215 1.215 21 H -0.222 1.222 22 H -0.200 1.200 23 C 0.062 3.938 24 H 0.091 0.909 25 C -0.113 4.113 26 C -0.186 4.186 27 C -0.178 4.178 28 N -0.100 5.100 29 N -0.075 5.075 30 N -0.139 5.139 31 C -0.067 4.067 32 H 0.122 0.878 33 H 0.131 0.869 34 H 0.113 0.887 35 H 0.247 0.753 36 H 0.091 0.909 37 H 0.079 0.921 38 H 0.066 0.934 39 H 0.088 0.912 40 H 0.048 0.952 41 H 0.039 0.961 42 H 0.055 0.945 43 H 0.050 0.950 44 H 0.070 0.930 45 H 0.104 0.896 46 H 0.082 0.918 47 H 0.071 0.929 48 H 0.056 0.944 49 H 0.126 0.874 50 H 0.128 0.872 51 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -11.872 -24.272 1.661 27.071 hybrid contribution 0.299 1.515 0.078 1.546 sum -11.573 -22.758 1.739 25.590 Atomic orbital electron populations 1.20834 0.82134 1.06336 1.05681 1.22362 0.97475 0.85703 0.95201 1.21328 0.89557 0.95722 1.20742 1.16923 0.85443 0.83010 0.75666 1.90718 1.16386 1.84036 1.52628 1.45812 1.10229 1.05382 1.72704 1.22565 0.98498 0.78213 0.96504 0.86859 1.23167 0.98810 0.96628 0.95865 0.90330 1.20889 0.96864 0.97255 0.98183 1.21468 0.99657 0.97753 0.98497 1.20387 0.89841 0.93538 0.89848 1.43300 1.30565 1.06031 1.49862 1.19459 0.92174 0.86213 1.41624 0.92093 1.25614 0.95440 1.01104 1.01560 1.70193 0.96721 1.34746 1.55514 0.85458 0.76729 0.82066 0.77240 1.21543 1.22217 1.19975 1.21294 0.90759 0.90024 0.91723 0.90913 1.22885 0.94716 0.96688 0.96993 1.21903 0.94566 0.98446 1.03664 1.21553 1.01110 0.99928 0.95199 1.74583 1.19967 1.04930 1.10511 1.81891 0.98008 1.03071 1.24506 1.50620 1.05219 1.09393 1.48707 1.22720 1.04164 0.73159 1.06607 0.87761 0.86885 0.88704 0.75340 0.90920 0.92092 0.93355 0.91169 0.95224 0.96074 0.94454 0.95012 0.92960 0.89615 0.91797 0.92906 0.94391 0.87360 0.87172 0.85317 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.03 9.57 71.24 0.68 -0.35 16 2 C 0.13 2.49 7.02 41.71 0.29 2.78 16 3 C -0.13 -3.53 6.99 40.82 0.29 -3.24 16 4 C 0.60 17.80 7.82 86.69 0.68 18.48 16 5 O -0.56 -17.65 14.36 -4.01 -0.06 -17.71 16 6 N -0.69 -20.66 4.34 -442.49 -1.92 -22.58 16 7 C 0.15 4.70 3.58 45.67 0.16 4.86 16 8 H 0.11 3.58 7.37 -2.39 -0.02 3.56 16 9 C -0.12 -4.26 4.31 -10.31 -0.04 -4.30 16 10 H 0.08 2.62 8.14 -2.39 -0.02 2.60 16 11 C -0.09 -3.20 4.57 29.76 0.14 -3.06 16 12 C -0.14 -5.11 5.92 29.72 0.18 -4.94 16 13 C 0.19 8.95 3.99 86.48 0.35 9.30 16 14 N -0.58 -28.01 2.64 -681.84 -1.80 -29.80 16 15 C -0.26 -14.28 9.45 84.03 0.79 -13.49 16 16 H 0.06 3.27 7.85 -2.91 -0.02 3.24 16 17 C -0.04 -2.28 4.86 84.86 0.41 -1.87 16 18 N -0.93 -53.74 11.10 21.65 0.24 -53.50 16 19 Si 0.96 45.24 29.58 68.60 2.03 47.27 16 20 H -0.29 -13.55 7.11 99.48 0.71 -12.84 16 21 H -0.30 -14.11 7.11 99.48 0.71 -13.40 16 22 H -0.27 -12.59 7.11 99.48 0.71 -11.88 16 23 C 0.17 6.93 3.58 45.45 0.16 7.09 16 24 H 0.07 2.96 7.95 -2.39 -0.02 2.95 16 25 C -0.11 -3.93 1.34 -51.76 -0.07 -4.00 16 26 C -0.13 -4.95 6.71 71.98 0.48 -4.47 16 27 C -0.12 -4.15 9.16 71.98 0.66 -3.49 16 28 N -0.23 -6.52 12.04 -50.00 -0.60 -7.12 16 29 N -0.10 -2.38 13.78 37.02 0.51 -1.87 16 30 N -0.35 -5.80 4.03 -355.09 -1.43 -7.23 16 31 C 0.07 0.27 11.33 127.77 1.45 1.72 16 32 H 0.10 0.97 8.14 -2.38 -0.02 0.95 16 33 H 0.11 0.36 7.18 -2.39 -0.02 0.34 16 34 H 0.09 1.53 6.43 -2.39 -0.02 1.52 16 35 H 0.41 12.27 5.41 -92.71 -0.50 11.77 16 36 H 0.07 2.48 3.76 -2.39 -0.01 2.47 16 37 H 0.06 1.88 8.14 -2.39 -0.02 1.86 16 38 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 39 H 0.07 2.39 8.14 -2.39 -0.02 2.37 16 40 H 0.03 1.60 6.61 -2.39 -0.02 1.58 16 41 H 0.02 1.09 5.54 -2.39 -0.01 1.08 16 42 H 0.25 14.04 8.31 -92.71 -0.77 13.27 16 43 H 0.03 1.41 8.09 -2.38 -0.02 1.39 16 44 H 0.05 1.73 6.54 -2.39 -0.02 1.72 16 45 H 0.09 3.44 1.93 -2.39 0.00 3.44 16 46 H 0.06 1.94 7.95 -2.39 -0.02 1.92 16 47 H 0.05 1.66 8.14 -2.39 -0.02 1.64 16 48 H 0.04 1.49 8.14 -2.39 -0.02 1.47 16 49 H 0.11 0.08 8.14 -2.39 -0.02 0.06 16 50 H 0.11 0.27 8.14 -2.39 -0.02 0.25 16 51 H 0.13 -0.32 7.16 -2.38 -0.02 -0.33 16 Total: -1.00 -70.74 384.77 4.04 -66.70 By element: Atomic # 1 Polarization: 24.35 SS G_CDS: 0.47 Total: 24.82 kcal Atomic # 6 Polarization: -5.58 SS G_CDS: 6.60 Total: 1.03 kcal Atomic # 7 Polarization: -117.11 SS G_CDS: -5.00 Total: -122.11 kcal Atomic # 8 Polarization: -17.65 SS G_CDS: -0.06 Total: -17.71 kcal Atomic # 14 Polarization: 45.24 SS G_CDS: 2.03 Total: 47.27 kcal Total: -70.74 4.04 -66.70 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087281037.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.646 kcal (2) G-P(sol) polarization free energy of solvation -70.741 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.905 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.697 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds