Wall clock time and date at job start Wed Apr 1 2020 04:56:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39899 * 125.74483 * 2 1 4 4 C 1.30289 * 109.22797 * 179.73313 * 3 2 1 5 5 C 1.41483 * 108.19388 * 0.41608 * 4 3 2 6 6 C 1.46769 * 126.52097 * 179.85272 * 5 4 3 7 7 O 1.21687 * 119.99959 * 179.68804 * 6 5 4 8 8 N 1.34777 * 120.00038 * 359.68292 * 6 5 4 9 9 C 1.46493 * 120.00012 * 180.02562 * 8 6 5 10 10 H 1.09000 * 113.22795 * 28.29927 * 9 8 6 11 11 C 1.50009 * 114.12437 * 255.49372 * 9 8 6 12 12 H 1.09003 * 112.50502 * 170.16565 * 11 9 8 13 13 C 1.51200 * 126.17487 * 27.77122 * 11 9 8 14 14 C 1.54083 * 106.19427 * 198.56948 * 13 11 9 15 15 C 1.52502 * 112.67282 * 55.43465 * 14 13 11 16 16 N 1.49343 * 111.80786 * 312.94762 * 15 14 13 17 17 C 1.36932 * 123.72514 * 231.85272 * 16 15 14 18 18 H 1.07998 * 120.00445 * 147.59334 * 17 16 15 19 19 C 1.38814 * 119.99667 * 327.59061 * 17 16 15 20 20 N 1.31623 * 119.99719 * 164.90753 * 19 17 16 21 21 Si 1.86795 * 120.00340 * 344.90505 * 19 17 16 22 22 H 1.48497 * 109.47416 * 85.36713 * 21 19 17 23 23 H 1.48497 * 109.47245 * 205.36783 * 21 19 17 24 24 H 1.48501 * 109.47308 * 325.36426 * 21 19 17 25 25 C 1.45386 * 113.10601 * 52.25236 * 16 15 14 26 26 H 1.09000 * 112.09645 * 59.33232 * 25 16 15 27 27 C 1.49964 * 126.21269 * 203.75655 * 25 16 15 28 28 C 1.52993 * 114.08629 * 253.22423 * 27 25 16 29 29 C 1.53004 * 114.08587 * 25.65133 * 27 25 16 30 30 C 1.34845 * 125.75059 * 179.97438 * 2 1 3 31 31 N 1.38016 * 126.44095 * 359.97438 * 30 2 1 32 32 H 1.08997 * 109.46988 * 269.99931 * 1 2 3 33 33 H 1.09000 * 109.47074 * 29.99576 * 1 2 3 34 34 H 1.08997 * 109.46981 * 149.99918 * 1 2 3 35 35 H 1.07997 * 125.90391 * 180.27684 * 4 3 2 36 36 H 0.97007 * 119.99658 * 0.02562 * 8 6 5 37 37 H 1.09006 * 110.10333 * 317.73680 * 13 11 9 38 38 H 1.09000 * 110.10379 * 79.39851 * 13 11 9 39 39 H 1.09004 * 108.84571 * 176.25879 * 14 13 11 40 40 H 1.09008 * 108.84229 * 294.61437 * 14 13 11 41 41 H 1.08993 * 108.99778 * 73.83144 * 15 14 13 42 42 H 1.08998 * 109.00106 * 192.60023 * 15 14 13 43 43 H 0.96996 * 119.99752 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.46990 * 59.99938 * 28 27 25 45 45 H 1.09000 * 109.47793 * 180.02562 * 28 27 25 46 46 H 1.09001 * 109.47309 * 300.00598 * 28 27 25 47 47 H 1.08994 * 109.47317 * 47.39205 * 29 27 25 48 48 H 1.09002 * 109.47155 * 167.39510 * 29 27 25 49 49 H 1.09002 * 109.46769 * 287.38946 * 29 27 25 50 50 H 0.96999 * 119.99376 * 180.02562 * 31 30 2 51 51 H 0.96993 * 120.00379 * 0.02562 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1355 0.0000 4 6 3.5314 0.7651 0.0057 5 6 3.5728 -0.6492 0.0000 6 6 4.7774 -1.4877 0.0004 7 8 4.6746 -2.7002 0.0008 8 7 5.9973 -0.9148 0.0003 9 6 7.1996 -1.7517 0.0002 10 1 7.0485 -2.7211 -0.4746 11 6 7.8988 -1.8206 1.3256 12 1 8.6833 -2.5771 1.3446 13 6 7.2546 -1.6596 2.6840 14 6 8.3975 -1.3386 3.6663 15 6 9.2158 -0.1245 3.2396 16 7 9.5882 -0.1865 1.7947 17 6 10.8684 -0.0366 1.3325 18 1 11.1896 -0.5690 0.4494 19 6 11.7535 0.7996 1.9990 20 7 13.0438 0.7247 1.7501 21 14 11.1134 2.0312 3.2491 22 1 10.9777 1.3693 4.5715 23 1 12.0655 3.1655 3.3588 24 1 9.7882 2.5380 2.8109 25 6 8.4486 -0.4139 0.9210 26 1 7.6959 0.3686 1.0168 27 6 8.4918 -1.0098 -0.4544 28 6 8.2677 0.0014 -1.5804 29 6 9.6882 -1.9320 -0.6981 30 6 2.2528 -1.0944 0.0005 31 7 1.8307 -2.4084 0.0016 32 1 -0.3633 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 4.3872 1.4237 0.0114 36 1 6.0792 0.0519 0.0004 37 1 6.5369 -0.8394 2.6634 38 1 6.7589 -2.5855 2.9756 39 1 7.9718 -1.1477 4.6514 40 1 9.0583 -2.2031 3.7322 41 1 8.6328 0.7782 3.4220 42 1 10.1271 -0.0834 3.8362 43 1 13.6622 1.3093 2.2155 44 1 9.0408 0.7688 -1.5388 45 1 8.3137 -0.5093 -2.5422 46 1 7.2885 0.4656 -1.4624 47 1 9.7880 -2.6259 0.1364 48 1 9.5331 -2.4924 -1.6201 49 1 10.5957 -1.3345 -0.7844 50 1 2.4823 -3.1270 0.0022 51 1 0.8827 -2.6133 0.0017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087283503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:52 Heat of formation + Delta-G solvation = 121.363247 kcal Electronic energy + Delta-G solvation = -32574.215476 eV Core-core repulsion = 28512.924153 eV Total energy + Delta-G solvation = -4061.291324 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.49 seconds Orbital eigenvalues (eV) -41.56817 -41.04220 -38.34543 -35.49036 -35.11816 -33.39362 -33.16433 -32.65694 -30.74737 -29.48501 -28.81973 -27.42246 -26.95379 -25.88094 -24.73613 -22.73450 -22.29721 -21.26437 -20.62980 -20.21472 -19.34038 -18.30603 -17.87540 -16.97070 -16.75812 -16.24362 -16.00171 -15.29600 -15.14012 -14.83481 -14.58968 -14.17568 -13.98789 -13.83864 -13.59302 -13.48480 -13.32900 -13.06412 -12.95603 -12.92403 -12.68154 -12.42552 -12.29643 -11.61215 -11.48883 -11.46888 -11.36075 -11.20117 -11.09501 -11.02259 -10.56369 -10.39058 -10.34347 -10.01474 -9.72765 -9.67773 -9.64118 -9.42547 -9.25202 -8.93929 -8.62724 -8.36130 -7.99059 -6.68704 -5.89180 -3.30614 1.69627 1.98936 2.15268 3.35184 3.41586 3.47950 3.50552 3.53396 3.64783 4.18760 4.57507 4.66621 4.69261 4.74672 4.85844 4.96450 5.05019 5.12599 5.24013 5.25715 5.44214 5.46058 5.54935 5.62829 5.75979 5.85801 5.97202 5.99950 6.05945 6.10488 6.13858 6.18881 6.33810 6.37329 6.42419 6.47486 6.49697 6.58479 6.61205 6.66635 6.71542 6.81229 6.90418 6.93699 6.99349 7.06306 7.17159 7.23595 7.60043 7.85831 8.00322 8.47044 8.55541 8.96487 9.76672 10.28199 11.26427 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.003171 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.367454 B = 8826.725169 C = 9208.612875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.102 3.898 2 N -0.404 5.404 3 N -0.307 5.307 4 C 0.114 3.886 5 C -0.368 4.368 6 C 0.608 3.392 7 O -0.571 6.571 8 N -0.700 5.700 9 C 0.145 3.855 10 H 0.095 0.905 11 C -0.170 4.170 12 H 0.103 0.897 13 C -0.083 4.083 14 C -0.129 4.129 15 C 0.124 3.876 16 N -0.589 5.589 17 C -0.251 4.251 18 H 0.100 0.900 19 C 0.024 3.976 20 N -0.914 5.914 21 Si 0.885 3.115 22 H -0.288 1.288 23 H -0.306 1.306 24 H -0.273 1.273 25 C 0.150 3.850 26 H 0.048 0.952 27 C -0.063 4.063 28 C -0.135 4.135 29 C -0.123 4.123 30 C 0.432 3.568 31 N -0.831 5.831 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.080 0.920 35 H 0.188 0.812 36 H 0.398 0.602 37 H 0.052 0.948 38 H 0.046 0.954 39 H 0.050 0.950 40 H 0.058 0.942 41 H 0.021 0.979 42 H 0.069 0.931 43 H 0.261 0.739 44 H 0.065 0.935 45 H 0.051 0.949 46 H 0.048 0.952 47 H 0.064 0.936 48 H 0.041 0.959 49 H 0.084 0.916 50 H 0.432 0.568 51 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.969 -4.174 -4.421 24.729 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.039 4.039 2 N -0.192 5.192 3 N -0.125 5.125 4 C -0.076 4.076 5 C -0.387 4.387 6 C 0.398 3.602 7 O -0.452 6.452 8 N -0.350 5.350 9 C 0.039 3.961 10 H 0.113 0.887 11 C -0.191 4.191 12 H 0.121 0.879 13 C -0.121 4.121 14 C -0.168 4.168 15 C -0.001 4.001 16 N -0.312 5.312 17 C -0.379 4.379 18 H 0.117 0.883 19 C -0.174 4.174 20 N -0.557 5.557 21 Si 0.716 3.284 22 H -0.216 1.216 23 H -0.234 1.234 24 H -0.199 1.199 25 C 0.042 3.958 26 H 0.066 0.934 27 C -0.064 4.064 28 C -0.192 4.192 29 C -0.179 4.179 30 C 0.198 3.802 31 N -0.381 5.381 32 H 0.092 0.908 33 H 0.113 0.887 34 H 0.098 0.902 35 H 0.205 0.795 36 H 0.234 0.766 37 H 0.070 0.930 38 H 0.065 0.935 39 H 0.069 0.931 40 H 0.077 0.923 41 H 0.039 0.961 42 H 0.087 0.913 43 H 0.071 0.929 44 H 0.084 0.916 45 H 0.070 0.930 46 H 0.067 0.933 47 H 0.083 0.917 48 H 0.061 0.939 49 H 0.102 0.898 50 H 0.269 0.731 51 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -24.702 -3.896 -4.392 25.390 hybrid contribution 0.088 0.366 1.005 1.074 sum -24.614 -3.530 -3.387 25.096 Atomic orbital electron populations 1.21786 0.74362 1.04419 1.03341 1.48171 1.06349 1.02433 1.62247 1.77140 1.01808 1.05220 1.28328 1.23807 0.95229 0.93560 0.94997 1.19323 0.90966 0.93603 1.34846 1.16848 0.82001 0.86611 0.74784 1.90651 1.86905 1.14294 1.53351 1.45379 1.04628 1.09849 1.75114 1.21409 0.83225 0.94138 0.97285 0.88664 1.23351 1.00054 1.02559 0.93143 0.87932 1.20980 0.96624 0.99765 0.94697 1.21896 0.97374 1.00136 0.97410 1.21535 0.97669 0.94648 0.86216 1.44418 1.03063 1.84843 0.98902 1.19134 0.84674 1.21097 1.13009 0.88295 1.25472 0.95439 0.97853 0.98679 1.69779 1.01168 1.40330 1.44435 0.86929 0.78107 0.81989 0.81408 1.21558 1.23411 1.19863 1.21752 0.90069 0.92716 0.91279 0.93446 1.21845 0.94084 0.96018 0.94495 1.21675 1.01124 0.98941 0.97482 1.21777 0.97169 0.98648 1.00355 1.18041 0.89489 0.81878 0.90812 1.41791 1.11127 1.02779 1.82381 0.90785 0.88743 0.90187 0.79530 0.76604 0.92958 0.93497 0.93104 0.92305 0.96093 0.91288 0.92882 0.91607 0.93029 0.93342 0.91721 0.93948 0.89778 0.73114 0.77396 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 0.53 11.25 59.85 0.67 1.20 16 2 N -0.40 -4.02 4.00 -66.82 -0.27 -4.29 16 3 N -0.31 -3.69 12.47 30.88 0.38 -3.30 16 4 C 0.11 1.32 11.49 -16.97 -0.20 1.13 16 5 C -0.37 -4.67 6.15 -104.82 -0.64 -5.32 16 6 C 0.61 8.79 7.79 -12.81 -0.10 8.69 16 7 O -0.57 -9.46 14.81 5.20 0.08 -9.39 16 8 N -0.70 -9.63 4.25 -58.94 -0.25 -9.88 16 9 C 0.15 2.24 3.90 -71.83 -0.28 1.96 16 10 H 0.10 1.54 7.60 -51.93 -0.39 1.15 16 11 C -0.17 -2.91 2.98 -95.81 -0.29 -3.19 16 12 H 0.10 1.90 5.87 -51.93 -0.30 1.60 16 13 C -0.08 -1.39 5.94 -27.07 -0.16 -1.55 16 14 C -0.13 -2.31 5.90 -26.42 -0.16 -2.47 16 15 C 0.12 2.65 4.26 -2.72 -0.01 2.64 16 16 N -0.59 -13.34 2.63 -168.62 -0.44 -13.78 16 17 C -0.25 -6.63 9.77 -15.06 -0.15 -6.78 16 18 H 0.10 2.71 4.82 -52.49 -0.25 2.45 16 19 C 0.02 0.69 5.37 -17.43 -0.09 0.59 16 20 N -0.91 -27.52 13.97 55.49 0.78 -26.74 16 21 Si 0.88 22.36 24.45 -169.99 -4.16 18.20 16 22 H -0.29 -7.08 6.40 56.52 0.36 -6.72 16 23 H -0.31 -7.93 7.11 56.52 0.40 -7.53 16 24 H -0.27 -6.81 6.84 56.52 0.39 -6.42 16 25 C 0.15 2.79 2.92 -72.12 -0.21 2.58 16 26 H 0.05 0.88 6.60 -51.93 -0.34 0.54 16 27 C -0.06 -1.03 1.38 -159.14 -0.22 -1.25 16 28 C -0.13 -1.98 9.22 37.15 0.34 -1.64 16 29 C -0.12 -2.09 8.07 37.16 0.30 -1.79 16 30 C 0.43 4.73 7.98 -153.78 -1.23 3.51 16 31 N -0.83 -6.79 9.02 31.40 0.28 -6.51 16 32 H 0.07 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 34 H 0.08 0.21 7.46 -51.93 -0.39 -0.18 16 35 H 0.19 1.68 7.50 -52.49 -0.39 1.29 16 36 H 0.40 4.94 5.17 -40.82 -0.21 4.73 16 37 H 0.05 0.87 7.97 -51.93 -0.41 0.45 16 38 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 39 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 40 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 41 H 0.02 0.45 7.12 -51.93 -0.37 0.08 16 42 H 0.07 1.62 4.97 -51.93 -0.26 1.36 16 43 H 0.26 7.57 8.31 -40.82 -0.34 7.23 16 44 H 0.06 1.07 8.14 -51.92 -0.42 0.65 16 45 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 46 H 0.05 0.62 6.32 -51.93 -0.33 0.29 16 47 H 0.06 1.16 5.89 -51.93 -0.31 0.85 16 48 H 0.04 0.62 8.14 -51.93 -0.42 0.20 16 49 H 0.08 1.65 5.65 -51.93 -0.29 1.36 16 50 H 0.43 4.14 7.01 -40.82 -0.29 3.85 16 51 H 0.40 1.83 8.04 -40.82 -0.33 1.50 16 LS Contribution 381.76 15.07 5.75 5.75 Total: -1.00 -33.66 381.76 -7.70 -41.36 By element: Atomic # 1 Polarization: 17.71 SS G_CDS: -7.44 Total: 10.26 kcal Atomic # 6 Polarization: 0.72 SS G_CDS: -2.42 Total: -1.70 kcal Atomic # 7 Polarization: -64.98 SS G_CDS: 0.48 Total: -64.50 kcal Atomic # 8 Polarization: -9.46 SS G_CDS: 0.08 Total: -9.39 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -4.16 Total: 18.20 kcal Total LS contribution 5.75 Total: 5.75 kcal Total: -33.66 -7.70 -41.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 162.724 kcal (2) G-P(sol) polarization free energy of solvation -33.658 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.361 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.363 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.49 seconds