Wall clock time and date at job start Wed Apr 1 2020 04:56:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 N 1.39899 * 125.74483 * 2 1 4 4 C 1.30289 * 109.22797 * 179.73313 * 3 2 1 5 5 C 1.41483 * 108.19388 * 0.41608 * 4 3 2 6 6 C 1.46769 * 126.52097 * 179.85272 * 5 4 3 7 7 O 1.21687 * 119.99959 * 179.68804 * 6 5 4 8 8 N 1.34777 * 120.00038 * 359.68292 * 6 5 4 9 9 C 1.46493 * 120.00012 * 180.02562 * 8 6 5 10 10 H 1.09000 * 113.22795 * 28.29927 * 9 8 6 11 11 C 1.50009 * 114.12437 * 255.49372 * 9 8 6 12 12 H 1.09003 * 112.50502 * 170.16565 * 11 9 8 13 13 C 1.51200 * 126.17487 * 27.77122 * 11 9 8 14 14 C 1.54083 * 106.19427 * 198.56948 * 13 11 9 15 15 C 1.52502 * 112.67282 * 55.43465 * 14 13 11 16 16 N 1.49343 * 111.80786 * 312.94762 * 15 14 13 17 17 C 1.36932 * 123.72514 * 231.85272 * 16 15 14 18 18 H 1.07998 * 120.00445 * 147.59334 * 17 16 15 19 19 C 1.38814 * 119.99667 * 327.59061 * 17 16 15 20 20 N 1.31623 * 119.99719 * 164.90753 * 19 17 16 21 21 Si 1.86795 * 120.00340 * 344.90505 * 19 17 16 22 22 H 1.48497 * 109.47416 * 85.36713 * 21 19 17 23 23 H 1.48497 * 109.47245 * 205.36783 * 21 19 17 24 24 H 1.48501 * 109.47308 * 325.36426 * 21 19 17 25 25 C 1.45386 * 113.10601 * 52.25236 * 16 15 14 26 26 H 1.09000 * 112.09645 * 59.33232 * 25 16 15 27 27 C 1.49964 * 126.21269 * 203.75655 * 25 16 15 28 28 C 1.52993 * 114.08629 * 253.22423 * 27 25 16 29 29 C 1.53004 * 114.08587 * 25.65133 * 27 25 16 30 30 C 1.34845 * 125.75059 * 179.97438 * 2 1 3 31 31 N 1.38016 * 126.44095 * 359.97438 * 30 2 1 32 32 H 1.08997 * 109.46988 * 269.99931 * 1 2 3 33 33 H 1.09000 * 109.47074 * 29.99576 * 1 2 3 34 34 H 1.08997 * 109.46981 * 149.99918 * 1 2 3 35 35 H 1.07997 * 125.90391 * 180.27684 * 4 3 2 36 36 H 0.97007 * 119.99658 * 0.02562 * 8 6 5 37 37 H 1.09006 * 110.10333 * 317.73680 * 13 11 9 38 38 H 1.09000 * 110.10379 * 79.39851 * 13 11 9 39 39 H 1.09004 * 108.84571 * 176.25879 * 14 13 11 40 40 H 1.09008 * 108.84229 * 294.61437 * 14 13 11 41 41 H 1.08993 * 108.99778 * 73.83144 * 15 14 13 42 42 H 1.08998 * 109.00106 * 192.60023 * 15 14 13 43 43 H 0.96996 * 119.99752 * 179.97438 * 20 19 17 44 44 H 1.09007 * 109.46990 * 59.99938 * 28 27 25 45 45 H 1.09000 * 109.47793 * 180.02562 * 28 27 25 46 46 H 1.09001 * 109.47309 * 300.00598 * 28 27 25 47 47 H 1.08994 * 109.47317 * 47.39205 * 29 27 25 48 48 H 1.09002 * 109.47155 * 167.39510 * 29 27 25 49 49 H 1.09002 * 109.46769 * 287.38946 * 29 27 25 50 50 H 0.96999 * 119.99376 * 180.02562 * 31 30 2 51 51 H 0.96993 * 120.00379 * 0.02562 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1355 0.0000 4 6 3.5314 0.7651 0.0057 5 6 3.5728 -0.6492 0.0000 6 6 4.7774 -1.4877 0.0004 7 8 4.6746 -2.7002 0.0008 8 7 5.9973 -0.9148 0.0003 9 6 7.1996 -1.7517 0.0002 10 1 7.0485 -2.7211 -0.4746 11 6 7.8988 -1.8206 1.3256 12 1 8.6833 -2.5771 1.3446 13 6 7.2546 -1.6596 2.6840 14 6 8.3975 -1.3386 3.6663 15 6 9.2158 -0.1245 3.2396 16 7 9.5882 -0.1865 1.7947 17 6 10.8684 -0.0366 1.3325 18 1 11.1896 -0.5690 0.4494 19 6 11.7535 0.7996 1.9990 20 7 13.0438 0.7247 1.7501 21 14 11.1134 2.0312 3.2491 22 1 10.9777 1.3693 4.5715 23 1 12.0655 3.1655 3.3588 24 1 9.7882 2.5380 2.8109 25 6 8.4486 -0.4139 0.9210 26 1 7.6959 0.3686 1.0168 27 6 8.4918 -1.0098 -0.4544 28 6 8.2677 0.0014 -1.5804 29 6 9.6882 -1.9320 -0.6981 30 6 2.2528 -1.0944 0.0005 31 7 1.8307 -2.4084 0.0016 32 1 -0.3633 0.0000 1.0276 33 1 -0.3633 0.8900 -0.5138 34 1 -0.3633 -0.8900 -0.5138 35 1 4.3872 1.4237 0.0114 36 1 6.0792 0.0519 0.0004 37 1 6.5369 -0.8394 2.6634 38 1 6.7589 -2.5855 2.9756 39 1 7.9718 -1.1477 4.6514 40 1 9.0583 -2.2031 3.7322 41 1 8.6328 0.7782 3.4220 42 1 10.1271 -0.0834 3.8362 43 1 13.6622 1.3093 2.2155 44 1 9.0408 0.7688 -1.5388 45 1 8.3137 -0.5093 -2.5422 46 1 7.2885 0.4656 -1.4624 47 1 9.7880 -2.6259 0.1364 48 1 9.5331 -2.4924 -1.6201 49 1 10.5957 -1.3345 -0.7844 50 1 2.4823 -3.1270 0.0022 51 1 0.8827 -2.6133 0.0017 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087283503.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:56:50 Heat of formation + Delta-G solvation = 98.080995 kcal Electronic energy + Delta-G solvation = -32575.225071 eV Core-core repulsion = 28512.924153 eV Total energy + Delta-G solvation = -4062.300918 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -42.64881 -42.13263 -39.49922 -37.01190 -35.91584 -34.83106 -34.28397 -33.77929 -32.59185 -30.85094 -29.71676 -28.46070 -27.97180 -27.43433 -26.31040 -23.85202 -23.73196 -22.47892 -21.84469 -21.18918 -20.67051 -19.55016 -18.87847 -18.63124 -17.83737 -17.09258 -16.97624 -16.71281 -16.51776 -15.94700 -15.70336 -15.52560 -15.41729 -15.19397 -15.00172 -14.68647 -14.47246 -14.25159 -14.14559 -14.00872 -13.86319 -13.57560 -13.48671 -13.27156 -13.08998 -12.84249 -12.73751 -12.62338 -12.22824 -12.20493 -11.92160 -11.91222 -11.86881 -11.57069 -11.43537 -11.26572 -11.12835 -10.77203 -10.61451 -10.22627 -10.01002 -9.78686 -8.82538 -8.54291 -8.04977 -5.41045 0.87013 1.27697 1.32590 1.32725 1.42654 1.50775 2.37067 2.49675 2.62661 2.80361 3.09411 3.24275 3.52191 3.57704 3.73582 3.91689 4.06773 4.09589 4.15017 4.19932 4.35225 4.40338 4.43334 4.47816 4.53044 4.56274 4.61251 4.68570 4.68867 4.85722 4.89494 4.93144 5.00704 5.05366 5.10981 5.19511 5.21474 5.25194 5.28856 5.39228 5.41814 5.47872 5.56988 5.58921 5.64952 5.85631 6.00320 6.29738 6.40182 6.53678 6.72394 6.94958 6.98352 7.47603 7.70776 8.28591 9.14270 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.016225 B = 0.003171 C = 0.003040 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1725.367454 B = 8826.725169 C = 9208.612875 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.402 5.402 3 N -0.328 5.328 4 C 0.113 3.887 5 C -0.394 4.394 6 C 0.608 3.392 7 O -0.595 6.595 8 N -0.694 5.694 9 C 0.166 3.834 10 H 0.094 0.906 11 C -0.161 4.161 12 H 0.086 0.914 13 C -0.076 4.076 14 C -0.122 4.122 15 C 0.120 3.880 16 N -0.602 5.602 17 C -0.225 4.225 18 H 0.083 0.917 19 C -0.037 4.037 20 N -0.963 5.963 21 Si 0.937 3.063 22 H -0.279 1.279 23 H -0.318 1.318 24 H -0.265 1.265 25 C 0.134 3.866 26 H 0.061 0.939 27 C -0.064 4.064 28 C -0.131 4.131 29 C -0.117 4.117 30 C 0.432 3.568 31 N -0.817 5.817 32 H 0.086 0.914 33 H 0.100 0.900 34 H 0.107 0.893 35 H 0.205 0.795 36 H 0.406 0.594 37 H 0.059 0.941 38 H 0.057 0.943 39 H 0.075 0.925 40 H 0.050 0.950 41 H 0.026 0.974 42 H 0.044 0.956 43 H 0.256 0.744 44 H 0.045 0.955 45 H 0.066 0.934 46 H 0.069 0.931 47 H 0.051 0.949 48 H 0.067 0.933 49 H 0.052 0.948 50 H 0.428 0.572 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.872 -4.440 -4.463 28.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.190 5.190 3 N -0.147 5.147 4 C -0.077 4.077 5 C -0.414 4.414 6 C 0.400 3.600 7 O -0.479 6.479 8 N -0.344 5.344 9 C 0.059 3.941 10 H 0.112 0.888 11 C -0.182 4.182 12 H 0.104 0.896 13 C -0.113 4.113 14 C -0.161 4.161 15 C -0.004 4.004 16 N -0.326 5.326 17 C -0.354 4.354 18 H 0.100 0.900 19 C -0.230 4.230 20 N -0.611 5.611 21 Si 0.768 3.232 22 H -0.206 1.206 23 H -0.248 1.248 24 H -0.189 1.189 25 C 0.027 3.973 26 H 0.078 0.922 27 C -0.065 4.065 28 C -0.188 4.188 29 C -0.174 4.174 30 C 0.195 3.805 31 N -0.368 5.368 32 H 0.105 0.895 33 H 0.118 0.882 34 H 0.126 0.874 35 H 0.222 0.778 36 H 0.243 0.757 37 H 0.078 0.922 38 H 0.076 0.924 39 H 0.094 0.906 40 H 0.069 0.931 41 H 0.044 0.956 42 H 0.063 0.937 43 H 0.065 0.935 44 H 0.064 0.936 45 H 0.085 0.915 46 H 0.088 0.912 47 H 0.070 0.930 48 H 0.086 0.914 49 H 0.071 0.929 50 H 0.264 0.736 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -28.710 -4.162 -4.427 29.346 hybrid contribution 1.158 0.337 0.958 1.541 sum -27.552 -3.825 -3.469 28.032 Atomic orbital electron populations 1.22192 0.71831 1.06157 1.04745 1.48449 1.07652 1.01503 1.61439 1.77076 1.02244 1.06569 1.28820 1.24099 0.95754 0.93411 0.94445 1.19292 0.91000 0.94021 1.37052 1.17077 0.82382 0.86448 0.74093 1.90637 1.87245 1.15375 1.54594 1.45259 1.03971 1.10025 1.75167 1.21079 0.83246 0.94123 0.95604 0.88844 1.23273 0.99881 1.00619 0.94397 0.89565 1.20925 0.96121 1.00502 0.93801 1.21807 0.97282 0.98028 0.98985 1.21583 0.97188 0.96577 0.85089 1.44547 1.02859 1.84829 1.00403 1.19221 0.86086 1.18766 1.11370 0.89984 1.26020 0.95564 1.00114 1.01340 1.69908 1.02357 1.41949 1.46862 0.86051 0.77370 0.79694 0.80086 1.20620 1.24786 1.18949 1.22082 0.88746 0.93851 0.92579 0.92193 1.21849 0.94354 0.96169 0.94131 1.21643 1.01576 0.98077 0.97506 1.21657 0.96254 0.98294 1.01170 1.18147 0.89410 0.82900 0.90088 1.41763 1.12172 1.01629 1.81201 0.89520 0.88169 0.87421 0.77827 0.75689 0.92207 0.92412 0.90595 0.93078 0.95560 0.93717 0.93466 0.93608 0.91541 0.91209 0.92959 0.91420 0.92911 0.73628 0.75343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.65 11.25 127.77 1.44 2.09 16 2 N -0.40 -6.92 4.00 -365.32 -1.46 -8.38 16 3 N -0.33 -7.16 12.47 -56.23 -0.70 -7.86 16 4 C 0.11 2.35 11.49 85.72 0.99 3.34 16 5 C -0.39 -9.10 6.15 -19.99 -0.12 -9.22 16 6 C 0.61 16.18 7.79 86.47 0.67 16.86 16 7 O -0.60 -18.51 14.81 -4.31 -0.06 -18.57 16 8 N -0.69 -17.35 4.25 -458.61 -1.95 -19.30 16 9 C 0.17 4.78 3.90 42.47 0.17 4.95 16 10 H 0.09 2.82 7.60 -2.39 -0.02 2.81 16 11 C -0.16 -5.24 2.98 -14.16 -0.04 -5.28 16 12 H 0.09 3.14 5.87 -2.39 -0.01 3.13 16 13 C -0.08 -2.35 5.94 30.37 0.18 -2.17 16 14 C -0.12 -4.13 5.90 30.80 0.18 -3.95 16 15 C 0.12 4.99 4.26 85.66 0.37 5.36 16 16 N -0.60 -27.09 2.63 -687.39 -1.81 -28.90 16 17 C -0.23 -12.15 9.77 84.03 0.82 -11.33 16 18 H 0.08 4.68 4.82 -2.91 -0.01 4.67 16 19 C -0.04 -2.11 5.37 84.86 0.46 -1.66 16 20 N -0.96 -60.31 13.97 21.65 0.30 -60.01 16 21 Si 0.94 46.95 24.45 68.60 1.68 48.62 16 22 H -0.28 -13.40 6.40 99.48 0.64 -12.76 16 23 H -0.32 -16.47 7.11 99.48 0.71 -15.76 16 24 H -0.26 -12.68 6.84 99.48 0.68 -12.00 16 25 C 0.13 4.83 2.92 42.87 0.13 4.95 16 26 H 0.06 2.06 6.60 -2.39 -0.02 2.05 16 27 C -0.06 -2.01 1.38 -55.18 -0.08 -2.09 16 28 C -0.13 -3.62 9.22 71.98 0.66 -2.95 16 29 C -0.12 -3.99 8.07 71.98 0.58 -3.41 16 30 C 0.43 8.33 7.98 132.69 1.06 9.39 16 31 N -0.82 -11.14 9.02 -54.57 -0.49 -11.63 16 32 H 0.09 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.10 0.64 8.14 -2.39 -0.02 0.62 16 34 H 0.11 0.16 7.46 -2.39 -0.02 0.14 16 35 H 0.21 3.16 7.50 -2.91 -0.02 3.14 16 36 H 0.41 8.92 5.17 -92.70 -0.48 8.44 16 37 H 0.06 1.78 7.97 -2.38 -0.02 1.77 16 38 H 0.06 1.70 8.14 -2.39 -0.02 1.68 16 39 H 0.08 2.21 8.14 -2.39 -0.02 2.19 16 40 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 41 H 0.03 1.08 7.12 -2.39 -0.02 1.06 16 42 H 0.04 2.08 4.97 -2.39 -0.01 2.06 16 43 H 0.26 15.50 8.31 -92.71 -0.77 14.73 16 44 H 0.04 1.45 8.14 -2.38 -0.02 1.43 16 45 H 0.07 1.64 8.14 -2.39 -0.02 1.62 16 46 H 0.07 1.61 6.32 -2.39 -0.02 1.59 16 47 H 0.05 1.89 5.89 -2.39 -0.01 1.88 16 48 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 49 H 0.05 2.14 5.65 -2.39 -0.01 2.13 16 50 H 0.43 7.21 7.01 -92.71 -0.65 6.56 16 51 H 0.41 2.47 8.04 -92.71 -0.75 1.73 16 Total: -1.00 -74.14 381.76 1.99 -72.14 By element: Atomic # 1 Polarization: 29.96 SS G_CDS: -0.97 Total: 28.99 kcal Atomic # 6 Polarization: -2.57 SS G_CDS: 7.45 Total: 4.88 kcal Atomic # 7 Polarization: -129.97 SS G_CDS: -6.10 Total: -136.07 kcal Atomic # 8 Polarization: -18.51 SS G_CDS: -0.06 Total: -18.57 kcal Atomic # 14 Polarization: 46.95 SS G_CDS: 1.68 Total: 48.62 kcal Total: -74.14 1.99 -72.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283503.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 170.223 kcal (2) G-P(sol) polarization free energy of solvation -74.135 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.088 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.993 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.081 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds