Wall clock time and date at job start Wed Apr 1 2020 04:57:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 N 1.39892 * 125.74269 * 2 1 4 4 C 1.30290 * 109.23243 * 180.02562 * 3 2 1 5 5 C 1.41488 * 108.18725 * 359.97438 * 4 3 2 6 6 C 1.46770 * 126.51666 * 179.97438 * 5 4 3 7 7 O 1.21688 * 120.00236 * 180.02562 * 6 5 4 8 8 N 1.34780 * 120.00438 * 0.02568 * 6 5 4 9 9 C 1.46493 * 120.00330 * 180.02562 * 8 6 5 10 10 H 1.09002 * 112.86970 * 26.76243 * 9 8 6 11 11 C 1.54159 * 113.63591 * 255.49716 * 9 8 6 12 12 H 1.09001 * 114.24672 * 104.29306 * 11 9 8 13 13 C 1.53056 * 111.68853 * 333.51132 * 11 9 8 14 14 C 1.51281 * 110.34163 * 214.83980 * 13 11 9 15 15 C 1.52940 * 109.36311 * 63.64268 * 14 13 11 16 16 N 1.45897 * 109.88740 * 303.15877 * 15 14 13 17 17 C 1.36938 * 118.48067 * 219.31905 * 16 15 14 18 18 H 1.08000 * 120.00003 * 153.36674 * 17 16 15 19 19 C 1.38810 * 119.99922 * 333.36411 * 17 16 15 20 20 N 1.31627 * 120.00197 * 344.12221 * 19 17 16 21 21 Si 1.86806 * 120.00004 * 164.13008 * 19 17 16 22 22 H 1.48498 * 109.47240 * 89.99699 * 21 19 17 23 23 H 1.48497 * 109.46997 * 209.99865 * 21 19 17 24 24 H 1.48495 * 109.46713 * 329.99320 * 21 19 17 25 25 C 1.45094 * 123.03189 * 39.33619 * 16 15 14 26 26 H 1.09000 * 112.25279 * 202.90854 * 25 16 15 27 27 C 1.53385 * 113.74193 * 73.27033 * 25 16 15 28 28 C 1.53003 * 113.68699 * 102.40012 * 27 25 16 29 29 C 1.52992 * 113.69033 * 331.26591 * 27 25 16 30 30 C 1.34845 * 125.74943 * 180.29759 * 2 1 3 31 31 N 1.38014 * 126.44581 * 0.02562 * 30 2 1 32 32 H 1.08999 * 109.47587 * 89.97454 * 1 2 3 33 33 H 1.09001 * 109.46716 * 209.97379 * 1 2 3 34 34 H 1.08996 * 109.47350 * 329.97250 * 1 2 3 35 35 H 1.07998 * 125.91101 * 180.02562 * 4 3 2 36 36 H 0.97000 * 119.99056 * 0.02562 * 8 6 5 37 37 H 1.09007 * 109.48173 * 333.57774 * 13 11 9 38 38 H 1.08992 * 109.48478 * 93.61563 * 13 11 9 39 39 H 1.09000 * 108.93922 * 303.92332 * 14 13 11 40 40 H 1.09003 * 109.84294 * 183.91073 * 14 13 11 41 41 H 1.08995 * 109.40630 * 183.02551 * 15 14 13 42 42 H 1.08999 * 109.40059 * 63.27870 * 15 14 13 43 43 H 0.96993 * 120.00092 * 179.97438 * 20 19 17 44 44 H 1.09000 * 109.47160 * 176.53135 * 28 27 25 45 45 H 1.09001 * 109.47134 * 296.53670 * 28 27 25 46 46 H 1.09004 * 109.46951 * 56.53260 * 28 27 25 47 47 H 1.08998 * 109.47168 * 333.83112 * 29 27 25 48 48 H 1.09002 * 109.47345 * 93.82844 * 29 27 25 49 49 H 1.09002 * 109.47668 * 213.83521 * 29 27 25 50 50 H 0.97001 * 119.99649 * 180.15930 * 31 30 2 51 51 H 0.97000 * 119.99846 * 0.16118 * 31 30 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 7 2.2822 1.1354 0.0000 4 6 3.5314 0.7652 -0.0006 5 6 3.5728 -0.6491 -0.0003 6 6 4.7774 -1.4876 -0.0013 7 8 4.6748 -2.7001 -0.0015 8 7 5.9973 -0.9146 -0.0020 9 6 7.1997 -1.7516 -0.0036 10 1 7.0347 -2.7293 -0.4563 11 6 7.9102 -1.8152 1.3630 12 1 7.7544 -2.7476 1.9056 13 6 7.6379 -0.5636 2.2009 14 6 8.8561 -0.2064 3.0237 15 6 10.0122 0.1520 2.0888 16 7 10.2771 -0.9575 1.1792 17 6 11.5786 -1.2581 0.8776 18 1 11.8481 -2.2640 0.5913 19 6 12.5515 -0.2700 0.9397 20 7 12.2003 0.9980 0.9774 21 14 14.3593 -0.7397 0.9697 22 1 14.8750 -0.8124 -0.4210 23 1 15.1238 0.2826 1.7284 24 1 14.5161 -2.0627 1.6256 25 6 9.2253 -1.7568 0.5793 26 1 9.5789 -2.7412 0.2725 27 6 8.4531 -1.0299 -0.5288 28 6 8.8599 -1.4541 -1.9415 29 6 8.4074 0.4890 -0.3514 30 6 2.2528 -1.0944 -0.0057 31 7 1.8308 -2.4084 -0.0130 32 1 -0.3634 0.0005 -1.0276 33 1 -0.3633 -0.8903 0.5134 34 1 -0.3634 0.8897 0.5142 35 1 4.3873 1.4238 -0.0003 36 1 6.0791 0.0519 -0.0015 37 1 7.4196 0.2756 1.5404 38 1 6.7851 -0.7427 2.8555 39 1 9.1340 -1.0647 3.6354 40 1 8.6311 0.6435 3.6682 41 1 10.9051 0.3573 2.6793 42 1 9.7496 1.0385 1.5116 43 1 12.8801 1.6884 1.0212 44 1 8.2296 -0.9438 -2.6697 45 1 9.9029 -1.1887 -2.1143 46 1 8.7370 -2.5321 -2.0466 47 1 8.5094 0.7346 0.7056 48 1 9.2244 0.9449 -0.9108 49 1 7.4559 0.8699 -0.7226 50 1 2.4824 -3.1270 -0.0144 51 1 0.8827 -2.6132 -0.0168 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087283506.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:57:05 Heat of formation + Delta-G solvation = 84.280188 kcal Electronic energy + Delta-G solvation = -32513.399021 eV Core-core repulsion = 28450.499655 eV Total energy + Delta-G solvation = -4062.899366 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.46734 -42.05590 -39.52216 -36.80025 -35.89353 -34.51876 -34.30007 -33.77174 -32.06320 -31.43032 -29.68924 -28.27376 -27.96538 -27.15856 -25.99871 -24.13357 -23.57404 -22.51538 -21.53188 -21.04140 -20.66166 -19.28348 -18.68519 -18.63826 -17.78929 -17.15165 -16.84953 -16.71498 -16.36094 -16.28487 -15.82906 -15.71482 -15.13732 -15.06358 -14.81641 -14.62049 -14.20074 -14.16087 -13.94888 -13.75234 -13.57773 -13.48570 -13.41059 -13.00987 -12.88386 -12.76383 -12.71399 -12.43992 -12.36070 -12.21518 -12.08024 -11.90885 -11.86241 -11.48934 -11.32718 -11.10979 -10.87609 -10.79549 -10.57940 -10.24613 -9.98252 -9.68132 -8.80323 -8.48134 -7.75788 -5.19749 0.88064 1.29253 1.34047 1.47614 1.50336 1.58179 2.48477 2.60263 2.64602 2.81303 3.36208 3.58459 3.64684 3.78879 3.86593 3.98672 4.08091 4.11194 4.23322 4.32798 4.41205 4.48614 4.53787 4.55125 4.60740 4.69255 4.72285 4.74731 4.83893 4.90255 4.94374 5.03559 5.11090 5.17491 5.20142 5.23411 5.36566 5.41847 5.43468 5.50101 5.60502 5.62426 5.69633 5.71226 5.77729 5.84527 6.05208 6.30149 6.48987 6.54745 6.78227 6.96779 7.29701 7.50772 8.07783 8.43112 9.26792 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024161 B = 0.002705 C = 0.002646 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1158.632687 B =10347.099637 C =10580.631336 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.090 3.910 2 N -0.401 5.401 3 N -0.327 5.327 4 C 0.113 3.887 5 C -0.395 4.395 6 C 0.601 3.399 7 O -0.602 6.602 8 N -0.699 5.699 9 C 0.152 3.848 10 H 0.100 0.900 11 C -0.126 4.126 12 H 0.068 0.932 13 C -0.092 4.092 14 C -0.136 4.136 15 C 0.188 3.812 16 N -0.580 5.580 17 C -0.264 4.264 18 H 0.058 0.942 19 C -0.040 4.040 20 N -0.924 5.924 21 Si 0.953 3.047 22 H -0.289 1.289 23 H -0.294 1.294 24 H -0.277 1.277 25 C 0.169 3.831 26 H 0.064 0.936 27 C -0.107 4.107 28 C -0.121 4.121 29 C -0.132 4.132 30 C 0.430 3.570 31 N -0.818 5.818 32 H 0.087 0.913 33 H 0.106 0.894 34 H 0.100 0.900 35 H 0.206 0.794 36 H 0.406 0.594 37 H 0.081 0.919 38 H 0.062 0.938 39 H 0.043 0.957 40 H 0.072 0.928 41 H 0.029 0.971 42 H 0.027 0.973 43 H 0.247 0.753 44 H 0.056 0.944 45 H 0.035 0.965 46 H 0.056 0.944 47 H 0.088 0.912 48 H 0.029 0.971 49 H 0.062 0.938 50 H 0.428 0.572 51 H 0.415 0.585 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.966 -2.135 -1.656 25.112 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.049 4.049 2 N -0.190 5.190 3 N -0.146 5.146 4 C -0.077 4.077 5 C -0.415 4.415 6 C 0.393 3.607 7 O -0.486 6.486 8 N -0.349 5.349 9 C 0.046 3.954 10 H 0.118 0.882 11 C -0.147 4.147 12 H 0.087 0.913 13 C -0.129 4.129 14 C -0.175 4.175 15 C 0.063 3.937 16 N -0.299 5.299 17 C -0.394 4.394 18 H 0.076 0.924 19 C -0.236 4.236 20 N -0.570 5.570 21 Si 0.783 3.217 22 H -0.216 1.216 23 H -0.221 1.221 24 H -0.202 1.202 25 C 0.060 3.940 26 H 0.082 0.918 27 C -0.111 4.111 28 C -0.178 4.178 29 C -0.188 4.188 30 C 0.193 3.807 31 N -0.368 5.368 32 H 0.106 0.894 33 H 0.125 0.875 34 H 0.119 0.881 35 H 0.223 0.777 36 H 0.244 0.756 37 H 0.099 0.901 38 H 0.080 0.920 39 H 0.062 0.938 40 H 0.091 0.909 41 H 0.047 0.953 42 H 0.044 0.956 43 H 0.056 0.944 44 H 0.075 0.925 45 H 0.054 0.946 46 H 0.075 0.925 47 H 0.106 0.894 48 H 0.049 0.951 49 H 0.081 0.919 50 H 0.263 0.737 51 H 0.247 0.753 Dipole moment (debyes) X Y Z Total from point charges -25.877 -1.782 -1.622 25.989 hybrid contribution 2.049 -0.735 -0.106 2.180 sum -23.828 -2.517 -1.728 24.023 Atomic orbital electron populations 1.22193 0.71822 1.06135 1.04772 1.48449 1.07648 1.01485 1.61444 1.77065 1.02188 1.06502 1.28820 1.24109 0.95792 0.93345 0.94440 1.19351 0.91052 0.94154 1.36936 1.17219 0.82783 0.86505 0.74198 1.90623 1.87397 1.15510 1.55023 1.45585 1.04263 1.10391 1.74645 1.22331 0.82313 0.94799 0.95929 0.88181 1.23182 0.96494 0.98792 0.96221 0.91307 1.21056 0.96800 0.96902 0.98148 1.21652 0.96747 1.00645 0.98445 1.20427 0.94363 0.89074 0.89831 1.43315 1.01295 1.35375 1.49874 1.19441 0.85439 0.93304 1.41249 0.92443 1.25545 1.01126 0.95174 1.01773 1.70181 1.32408 0.98871 1.55560 0.85493 0.81910 0.77089 0.77209 1.21583 1.22075 1.20242 1.21283 0.86931 0.93700 0.92123 0.91762 1.22852 0.95177 0.96590 0.96450 1.21553 1.00099 1.00534 0.95619 1.21949 0.99639 0.93248 1.03968 1.18159 0.89444 0.82909 0.90175 1.41760 1.12140 1.01659 1.81269 0.89425 0.87525 0.88141 0.77705 0.75605 0.90086 0.91978 0.93849 0.90909 0.95278 0.95563 0.94414 0.92507 0.94585 0.92540 0.89375 0.95131 0.91902 0.73688 0.75346 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.69 11.24 127.77 1.44 2.13 16 2 N -0.40 -7.17 4.00 -365.31 -1.46 -8.63 16 3 N -0.33 -7.28 12.47 -56.22 -0.70 -7.98 16 4 C 0.11 2.44 11.49 85.72 0.99 3.42 16 5 C -0.40 -9.62 6.15 -19.99 -0.12 -9.75 16 6 C 0.60 17.12 7.79 86.47 0.67 17.79 16 7 O -0.60 -19.90 14.78 -4.31 -0.06 -19.96 16 8 N -0.70 -18.79 4.31 -443.18 -1.91 -20.70 16 9 C 0.15 4.75 3.58 45.67 0.16 4.92 16 10 H 0.10 3.30 7.42 -2.39 -0.02 3.29 16 11 C -0.13 -4.29 4.33 -10.31 -0.04 -4.33 16 12 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 13 C -0.09 -2.92 4.60 30.05 0.14 -2.78 16 14 C -0.14 -4.97 5.96 30.01 0.18 -4.79 16 15 C 0.19 8.65 3.99 86.47 0.35 8.99 16 16 N -0.58 -27.71 2.64 -681.85 -1.80 -29.51 16 17 C -0.26 -14.22 9.46 84.03 0.80 -13.43 16 18 H 0.06 3.11 7.84 -2.91 -0.02 3.08 16 19 C -0.04 -2.21 4.86 84.86 0.41 -1.79 16 20 N -0.92 -52.71 11.05 21.65 0.24 -52.47 16 21 Si 0.95 45.01 29.58 68.60 2.03 47.04 16 22 H -0.29 -13.54 7.11 99.48 0.71 -12.83 16 23 H -0.29 -13.95 7.11 99.48 0.71 -13.24 16 24 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 25 C 0.17 6.80 3.58 45.45 0.16 6.96 16 26 H 0.06 2.68 7.95 -2.39 -0.02 2.67 16 27 C -0.11 -3.72 1.34 -51.76 -0.07 -3.79 16 28 C -0.12 -4.09 9.12 71.98 0.66 -3.44 16 29 C -0.13 -4.59 6.87 71.98 0.49 -4.10 16 30 C 0.43 8.74 7.98 132.69 1.06 9.80 16 31 N -0.82 -12.03 9.02 -54.57 -0.49 -12.52 16 32 H 0.09 0.45 8.14 -2.39 -0.02 0.43 16 33 H 0.11 0.23 7.47 -2.39 -0.02 0.21 16 34 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 35 H 0.21 3.27 7.50 -2.91 -0.02 3.25 16 36 H 0.41 9.56 4.58 -92.71 -0.42 9.14 16 37 H 0.08 2.44 3.74 -2.38 -0.01 2.43 16 38 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 39 H 0.04 1.64 8.14 -2.39 -0.02 1.62 16 40 H 0.07 2.34 8.14 -2.39 -0.02 2.32 16 41 H 0.03 1.54 6.55 -2.39 -0.02 1.52 16 42 H 0.03 1.29 5.53 -2.39 -0.01 1.28 16 43 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 44 H 0.06 1.71 8.14 -2.39 -0.02 1.70 16 45 H 0.03 1.40 8.14 -2.39 -0.02 1.38 16 46 H 0.06 1.76 8.02 -2.39 -0.02 1.74 16 47 H 0.09 3.25 1.86 -2.39 0.00 3.25 16 48 H 0.03 1.25 8.06 -2.39 -0.02 1.23 16 49 H 0.06 1.72 6.35 -2.39 -0.02 1.71 16 50 H 0.43 7.76 7.01 -92.71 -0.65 7.10 16 51 H 0.41 2.84 8.05 -92.71 -0.75 2.09 16 Total: -1.00 -70.06 382.89 2.28 -67.78 By element: Atomic # 1 Polarization: 31.94 SS G_CDS: -0.82 Total: 31.12 kcal Atomic # 6 Polarization: -1.44 SS G_CDS: 7.26 Total: 5.82 kcal Atomic # 7 Polarization: -125.68 SS G_CDS: -6.13 Total: -131.80 kcal Atomic # 8 Polarization: -19.90 SS G_CDS: -0.06 Total: -19.96 kcal Atomic # 14 Polarization: 45.01 SS G_CDS: 2.03 Total: 47.04 kcal Total: -70.06 2.28 -67.78 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087283506.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 152.061 kcal (2) G-P(sol) polarization free energy of solvation -70.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.997 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.283 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.781 kcal (6) G-S(sol) free energy of system = (1) + (5) 84.280 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds