Wall clock time and date at job start Wed Apr 1 2020 05:29:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 125.96115 * 2 1 4 4 C 1.33241 * 109.82719 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.52693 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46734 * 90.00082 * 5 4 3 7 7 O 1.21273 * 120.00302 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99572 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00284 * 180.02562 * 8 6 5 10 10 H 1.09005 * 113.21961 * 22.19211 * 9 8 6 11 11 C 1.49305 * 113.64050 * 248.31223 * 9 8 6 12 12 H 1.09002 * 112.95071 * 322.07141 * 11 9 8 13 13 C 1.51209 * 125.56259 * 104.24391 * 11 9 8 14 14 C 1.54086 * 106.19705 * 161.49945 * 13 11 9 15 15 C 1.52927 * 112.61798 * 304.41699 * 14 13 11 16 16 N 1.48408 * 111.62851 * 47.04231 * 15 14 13 17 17 C 1.36943 * 123.16077 * 128.13462 * 16 15 14 18 18 H 1.07999 * 119.99365 * 209.16348 * 17 16 15 19 19 C 1.38812 * 119.99984 * 29.16401 * 17 16 15 20 20 N 1.31617 * 119.99504 * 197.77450 * 19 17 16 21 21 Si 1.86799 * 120.00191 * 17.77102 * 19 17 16 22 22 H 1.48501 * 109.47046 * 267.70869 * 21 19 17 23 23 H 1.48499 * 109.47087 * 27.70682 * 21 19 17 24 24 H 1.48498 * 109.46890 * 147.71253 * 21 19 17 25 25 C 1.45377 * 113.66915 * 307.86361 * 16 15 14 26 26 H 1.09001 * 112.09507 * 300.48093 * 25 16 15 27 27 C 1.49968 * 126.67090 * 155.26404 * 25 16 15 28 28 C 1.53004 * 114.08437 * 334.31913 * 27 25 16 29 29 C 1.53003 * 114.08278 * 106.56476 * 27 25 16 30 30 N 1.30709 * 108.94641 * 0.26515 * 4 3 2 31 31 N 1.34427 * 125.96246 * 179.97438 * 2 1 3 32 32 H 0.97000 * 126.82070 * 0.02562 * 31 2 1 33 33 H 1.08999 * 109.47213 * 90.01893 * 1 2 3 34 34 H 1.09003 * 109.47354 * 210.02387 * 1 2 3 35 35 H 1.09009 * 109.47137 * 330.02082 * 1 2 3 36 36 H 1.08998 * 109.46837 * 330.00551 * 5 4 3 37 37 H 1.08999 * 109.47203 * 210.00561 * 5 4 3 38 38 H 0.97009 * 120.00387 * 0.02562 * 8 6 5 39 39 H 1.09000 * 110.10127 * 280.67435 * 13 11 9 40 40 H 1.09005 * 110.09970 * 42.33312 * 13 11 9 41 41 H 1.09008 * 108.84202 * 65.38583 * 14 13 11 42 42 H 1.08996 * 108.84427 * 183.73686 * 14 13 11 43 43 H 1.09004 * 109.15999 * 286.47270 * 15 14 13 44 44 H 1.08996 * 109.08345 * 167.56499 * 15 14 13 45 45 H 0.96999 * 119.99724 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47110 * 71.30319 * 28 27 25 47 47 H 1.08997 * 109.47000 * 191.30427 * 28 27 25 48 48 H 1.08999 * 109.46865 * 311.30425 * 28 27 25 49 49 H 1.08996 * 109.47006 * 59.99968 * 29 27 25 50 50 H 1.09002 * 109.46596 * 180.02562 * 29 27 25 51 51 H 1.08994 * 109.46987 * 300.00228 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7373 1.6236 0.0013 6 6 5.1306 1.9349 1.4224 7 8 4.5123 1.4455 2.3438 8 7 6.1701 2.7564 1.6693 9 6 6.5529 3.0587 3.0507 10 1 6.2136 2.3081 3.7647 11 6 6.2952 4.4749 3.4472 12 1 6.5017 5.1848 2.6462 13 6 5.1598 4.9494 4.3259 14 6 5.5627 6.3485 4.8305 15 6 6.9162 6.3497 5.5424 16 7 7.9427 5.6096 4.7671 17 6 9.1654 6.1374 4.4482 18 1 9.6730 5.8195 3.5495 19 6 9.7524 7.0810 5.2802 20 7 10.7283 7.8399 4.8287 21 14 9.1571 7.2736 7.0403 22 1 8.1022 8.3174 7.0946 23 1 8.6010 5.9825 7.5188 24 1 10.2948 7.6741 7.9065 25 6 7.5304 4.2694 4.3834 26 1 7.2962 3.6490 5.2485 27 6 8.0449 3.4720 3.2221 28 6 8.5930 4.3227 2.0745 29 6 8.9740 2.3223 3.6169 30 7 3.6194 -0.6168 -0.0048 31 7 2.2964 -1.0881 0.0005 32 1 2.0093 -2.0146 0.0006 33 1 -0.3633 -0.0003 -1.0277 34 1 -0.3634 -0.8898 0.5142 35 1 -0.3634 0.8902 0.5135 36 1 4.4704 2.5471 -0.5124 37 1 5.5746 1.1511 -0.5123 38 1 6.6649 3.1476 0.9323 39 1 4.2384 5.0110 3.7469 40 1 5.0294 4.2705 5.1687 41 1 5.6084 7.0296 3.9806 42 1 4.8015 6.7052 5.5243 43 1 6.8060 5.8831 6.5213 44 1 7.2471 7.3794 5.6770 45 1 11.1388 8.4990 5.4101 46 1 9.5363 4.7771 2.3774 47 1 8.7575 3.6918 1.2011 48 1 7.8755 5.1053 1.8277 49 1 8.4400 1.6313 4.2691 50 1 9.3022 1.7963 2.7204 51 1 9.8419 2.7205 4.1424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087284459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:34 Heat of formation + Delta-G solvation = 119.395598 kcal Electronic energy + Delta-G solvation = -31738.102789 eV Core-core repulsion = 27676.726142 eV Total energy + Delta-G solvation = -4061.376647 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -42.37280 -41.15272 -38.96601 -35.57612 -33.87489 -33.31466 -32.97987 -32.60278 -30.86445 -30.10530 -29.43608 -27.99225 -27.26934 -25.85807 -24.71774 -22.47329 -22.05673 -21.35642 -20.45206 -20.07407 -19.59027 -18.39737 -18.07887 -17.12237 -16.66840 -15.94652 -15.71890 -15.35381 -15.05545 -14.61662 -14.25283 -14.10951 -13.86279 -13.77131 -13.46893 -13.40424 -13.26069 -13.08226 -12.99489 -12.82499 -12.50219 -12.34245 -12.07269 -11.94804 -11.63936 -11.63591 -11.42815 -11.20325 -11.12583 -10.72700 -10.48541 -10.42061 -10.39357 -10.24205 -10.15686 -9.88684 -9.83382 -9.73070 -9.53901 -9.42631 -9.00910 -8.62345 -8.41768 -6.79010 -5.91896 -3.29848 1.34789 2.36029 2.56136 2.72051 3.34425 3.37274 3.50473 3.53542 3.73995 4.26635 4.47673 4.55586 4.60766 4.75110 4.89595 4.90160 4.98187 5.06955 5.14758 5.15475 5.33789 5.36623 5.40627 5.51098 5.59550 5.70339 5.81389 5.90920 5.96929 5.98040 6.01951 6.11111 6.12135 6.18063 6.27884 6.37893 6.39371 6.44063 6.50136 6.57416 6.59840 6.65326 6.75239 6.78525 6.79936 6.87698 6.93330 7.14505 7.66261 7.87196 7.95140 8.33412 8.42288 8.94063 9.74418 10.22872 11.23599 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.002535 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.074343 B =11044.671259 C =11703.312116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.530 5.530 4 C 0.255 3.745 5 C -0.052 4.052 6 C 0.521 3.479 7 O -0.536 6.536 8 N -0.710 5.710 9 C 0.143 3.857 10 H 0.115 0.885 11 C -0.169 4.169 12 H 0.101 0.899 13 C -0.090 4.090 14 C -0.129 4.129 15 C 0.126 3.874 16 N -0.585 5.585 17 C -0.252 4.252 18 H 0.100 0.900 19 C 0.023 3.977 20 N -0.912 5.912 21 Si 0.880 3.120 22 H -0.290 1.290 23 H -0.270 1.270 24 H -0.305 1.305 25 C 0.151 3.849 26 H 0.055 0.945 27 C -0.063 4.063 28 C -0.130 4.130 29 C -0.134 4.134 30 N -0.306 5.306 31 N -0.483 5.483 32 H 0.439 0.561 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.401 0.599 39 H 0.048 0.952 40 H 0.054 0.946 41 H 0.058 0.942 42 H 0.052 0.948 43 H 0.023 0.977 44 H 0.069 0.931 45 H 0.261 0.739 46 H 0.085 0.915 47 H 0.041 0.959 48 H 0.065 0.935 49 H 0.050 0.950 50 H 0.049 0.951 51 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.848 -15.325 -11.874 25.685 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.259 5.259 4 C -0.028 4.028 5 C -0.095 4.095 6 C 0.305 3.695 7 O -0.412 6.412 8 N -0.361 5.361 9 C 0.039 3.961 10 H 0.132 0.868 11 C -0.191 4.191 12 H 0.119 0.881 13 C -0.128 4.128 14 C -0.168 4.168 15 C 0.002 3.998 16 N -0.308 5.308 17 C -0.380 4.380 18 H 0.117 0.883 19 C -0.176 4.176 20 N -0.555 5.555 21 Si 0.711 3.289 22 H -0.218 1.218 23 H -0.195 1.195 24 H -0.233 1.233 25 C 0.043 3.957 26 H 0.072 0.928 27 C -0.064 4.064 28 C -0.186 4.186 29 C -0.191 4.191 30 N -0.134 5.134 31 N -0.202 5.202 32 H 0.284 0.716 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.236 0.764 39 H 0.067 0.933 40 H 0.073 0.927 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.087 0.913 45 H 0.071 0.929 46 H 0.104 0.896 47 H 0.060 0.940 48 H 0.084 0.916 49 H 0.069 0.931 50 H 0.068 0.932 51 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -16.526 -15.524 -11.170 25.276 hybrid contribution -0.409 -0.157 0.866 0.970 sum -16.935 -15.682 -10.304 25.276 Atomic orbital electron populations 1.20391 0.83662 1.05134 1.04431 1.24365 0.96605 0.82789 0.95876 1.70308 1.01299 1.29514 1.24773 1.23255 0.92628 0.89681 0.97282 1.19944 0.93749 0.98918 0.96869 1.20099 0.80395 0.78737 0.90219 1.90714 1.52659 1.51722 1.46107 1.45941 1.32407 1.48260 1.09462 1.22301 0.95082 0.96256 0.82495 0.86766 1.23355 0.99474 0.95760 1.00464 0.88074 1.21117 0.97045 0.96489 0.98114 1.21979 0.97739 0.96727 1.00394 1.21445 0.88179 0.96904 0.93299 1.44131 1.13275 1.08180 1.65241 1.19108 0.93283 1.20472 1.05119 0.88306 1.25373 0.96152 0.98384 0.97647 1.69794 1.27376 1.22556 1.35787 0.86968 0.76565 0.78004 0.87363 1.21760 1.19546 1.23337 1.21352 0.93560 0.88139 0.92682 0.92785 1.21877 0.92367 0.95432 0.96753 1.21826 1.03489 0.98294 0.95021 1.21705 0.99802 0.96967 1.00641 1.77969 0.96666 1.12253 1.26560 1.47921 1.04284 1.09964 1.57982 0.71583 0.89017 0.89900 0.88259 0.86010 0.86501 0.76423 0.93336 0.92739 0.92289 0.92961 0.95889 0.91309 0.92879 0.89625 0.94025 0.91648 0.93115 0.93202 0.91617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.35 10.51 36.01 0.38 0.03 16 2 C 0.28 2.74 8.24 -155.69 -1.28 1.45 16 3 N -0.53 -6.97 11.19 -8.16 -0.09 -7.06 16 4 C 0.25 3.38 6.63 -156.85 -1.04 2.34 16 5 C -0.05 -0.56 6.33 -29.03 -0.18 -0.74 16 6 C 0.52 7.26 7.82 -10.99 -0.09 7.17 16 7 O -0.54 -9.80 15.63 5.56 0.09 -9.72 16 8 N -0.71 -8.99 5.30 -58.00 -0.31 -9.30 16 9 C 0.14 2.17 3.54 -72.17 -0.26 1.92 16 10 H 0.11 1.91 7.39 -51.93 -0.38 1.53 16 11 C -0.17 -2.84 2.79 -98.50 -0.27 -3.11 16 12 H 0.10 1.78 5.76 -51.93 -0.30 1.48 16 13 C -0.09 -1.51 6.10 -27.07 -0.17 -1.68 16 14 C -0.13 -2.31 5.92 -26.20 -0.15 -2.47 16 15 C 0.13 2.73 4.25 -3.03 -0.01 2.72 16 16 N -0.59 -13.30 2.65 -169.16 -0.45 -13.75 16 17 C -0.25 -6.62 9.78 -15.06 -0.15 -6.77 16 18 H 0.10 2.67 4.91 -52.49 -0.26 2.41 16 19 C 0.02 0.65 5.33 -17.43 -0.09 0.56 16 20 N -0.91 -27.31 13.97 55.49 0.78 -26.53 16 21 Si 0.88 22.32 24.42 -169.99 -4.15 18.17 16 22 H -0.29 -7.17 6.66 56.52 0.38 -6.80 16 23 H -0.27 -6.78 6.47 56.52 0.37 -6.41 16 24 H -0.31 -7.94 7.11 56.52 0.40 -7.54 16 25 C 0.15 2.88 3.08 -72.14 -0.22 2.66 16 26 H 0.05 1.07 8.00 -51.93 -0.42 0.65 16 27 C -0.06 -1.01 1.36 -161.49 -0.22 -1.23 16 28 C -0.13 -2.03 7.18 37.16 0.27 -1.76 16 29 C -0.13 -2.02 9.29 37.16 0.35 -1.67 16 30 N -0.31 -4.00 12.80 32.42 0.41 -3.58 16 31 N -0.48 -4.56 7.45 32.62 0.24 -4.31 16 32 H 0.44 2.36 8.96 -182.34 -1.63 0.73 16 33 H 0.09 0.26 8.14 -51.93 -0.42 -0.17 16 34 H 0.08 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.10 0.49 8.14 -51.92 -0.42 0.07 16 36 H 0.12 1.03 8.14 -51.93 -0.42 0.61 16 37 H 0.12 0.93 8.14 -51.93 -0.42 0.51 16 38 H 0.40 4.07 7.36 -40.82 -0.30 3.77 16 39 H 0.05 0.78 8.14 -51.93 -0.42 0.36 16 40 H 0.05 0.92 8.06 -51.93 -0.42 0.50 16 41 H 0.06 1.07 8.14 -51.92 -0.42 0.64 16 42 H 0.05 0.84 8.14 -51.93 -0.42 0.41 16 43 H 0.02 0.50 6.94 -51.93 -0.36 0.14 16 44 H 0.07 1.62 4.83 -51.93 -0.25 1.36 16 45 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 46 H 0.09 1.61 5.57 -51.93 -0.29 1.32 16 47 H 0.04 0.52 7.73 -51.93 -0.40 0.12 16 48 H 0.06 1.06 5.81 -51.93 -0.30 0.76 16 49 H 0.05 0.73 8.05 -51.93 -0.42 0.31 16 50 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 51 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 LS Contribution 390.92 15.07 5.89 5.89 Total: -1.00 -36.26 390.92 -9.89 -46.15 By element: Atomic # 1 Polarization: 13.78 SS G_CDS: -9.16 Total: 4.63 kcal Atomic # 6 Polarization: 2.56 SS G_CDS: -3.15 Total: -0.59 kcal Atomic # 7 Polarization: -65.12 SS G_CDS: 0.59 Total: -64.53 kcal Atomic # 8 Polarization: -9.80 SS G_CDS: 0.09 Total: -9.72 kcal Atomic # 14 Polarization: 22.32 SS G_CDS: -4.15 Total: 18.17 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -36.26 -9.89 -46.15 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 165.549 kcal (2) G-P(sol) polarization free energy of solvation -36.261 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 129.287 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.892 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds