Wall clock time and date at job start Wed Apr 1 2020 05:29:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30836 * 125.96115 * 2 1 4 4 C 1.33241 * 109.82719 * 179.97438 * 3 2 1 5 5 C 1.50706 * 125.52693 * 180.02562 * 4 3 2 6 6 C 1.50700 * 109.46734 * 90.00082 * 5 4 3 7 7 O 1.21273 * 120.00302 * 0.02562 * 6 5 4 8 8 N 1.34774 * 119.99572 * 179.97438 * 6 5 4 9 9 C 1.46502 * 120.00284 * 180.02562 * 8 6 5 10 10 H 1.09005 * 113.21961 * 22.19211 * 9 8 6 11 11 C 1.49305 * 113.64050 * 248.31223 * 9 8 6 12 12 H 1.09002 * 112.95071 * 322.07141 * 11 9 8 13 13 C 1.51209 * 125.56259 * 104.24391 * 11 9 8 14 14 C 1.54086 * 106.19705 * 161.49945 * 13 11 9 15 15 C 1.52927 * 112.61798 * 304.41699 * 14 13 11 16 16 N 1.48408 * 111.62851 * 47.04231 * 15 14 13 17 17 C 1.36943 * 123.16077 * 128.13462 * 16 15 14 18 18 H 1.07999 * 119.99365 * 209.16348 * 17 16 15 19 19 C 1.38812 * 119.99984 * 29.16401 * 17 16 15 20 20 N 1.31617 * 119.99504 * 197.77450 * 19 17 16 21 21 Si 1.86799 * 120.00191 * 17.77102 * 19 17 16 22 22 H 1.48501 * 109.47046 * 267.70869 * 21 19 17 23 23 H 1.48499 * 109.47087 * 27.70682 * 21 19 17 24 24 H 1.48498 * 109.46890 * 147.71253 * 21 19 17 25 25 C 1.45377 * 113.66915 * 307.86361 * 16 15 14 26 26 H 1.09001 * 112.09507 * 300.48093 * 25 16 15 27 27 C 1.49968 * 126.67090 * 155.26404 * 25 16 15 28 28 C 1.53004 * 114.08437 * 334.31913 * 27 25 16 29 29 C 1.53003 * 114.08278 * 106.56476 * 27 25 16 30 30 N 1.30709 * 108.94641 * 0.26515 * 4 3 2 31 31 N 1.34427 * 125.96246 * 179.97438 * 2 1 3 32 32 H 0.97000 * 126.82070 * 0.02562 * 31 2 1 33 33 H 1.08999 * 109.47213 * 90.01893 * 1 2 3 34 34 H 1.09003 * 109.47354 * 210.02387 * 1 2 3 35 35 H 1.09009 * 109.47137 * 330.02082 * 1 2 3 36 36 H 1.08998 * 109.46837 * 330.00551 * 5 4 3 37 37 H 1.08999 * 109.47203 * 210.00561 * 5 4 3 38 38 H 0.97009 * 120.00387 * 0.02562 * 8 6 5 39 39 H 1.09000 * 110.10127 * 280.67435 * 13 11 9 40 40 H 1.09005 * 110.09970 * 42.33312 * 13 11 9 41 41 H 1.09008 * 108.84202 * 65.38583 * 14 13 11 42 42 H 1.08996 * 108.84427 * 183.73686 * 14 13 11 43 43 H 1.09004 * 109.15999 * 286.47270 * 15 14 13 44 44 H 1.08996 * 109.08345 * 167.56499 * 15 14 13 45 45 H 0.96999 * 119.99724 * 180.02562 * 20 19 17 46 46 H 1.09000 * 109.47110 * 71.30319 * 28 27 25 47 47 H 1.08997 * 109.47000 * 191.30427 * 28 27 25 48 48 H 1.08999 * 109.46865 * 311.30425 * 28 27 25 49 49 H 1.08996 * 109.47006 * 59.99968 * 29 27 25 50 50 H 1.09002 * 109.46596 * 180.02562 * 29 27 25 51 51 H 1.08994 * 109.46987 * 300.00228 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2753 1.0590 0.0000 4 6 3.5552 0.6888 0.0006 5 6 4.7373 1.6236 0.0013 6 6 5.1306 1.9349 1.4224 7 8 4.5123 1.4455 2.3438 8 7 6.1701 2.7564 1.6693 9 6 6.5529 3.0587 3.0507 10 1 6.2136 2.3081 3.7647 11 6 6.2952 4.4749 3.4472 12 1 6.5017 5.1848 2.6462 13 6 5.1598 4.9494 4.3259 14 6 5.5627 6.3485 4.8305 15 6 6.9162 6.3497 5.5424 16 7 7.9427 5.6096 4.7671 17 6 9.1654 6.1374 4.4482 18 1 9.6730 5.8195 3.5495 19 6 9.7524 7.0810 5.2802 20 7 10.7283 7.8399 4.8287 21 14 9.1571 7.2736 7.0403 22 1 8.1022 8.3174 7.0946 23 1 8.6010 5.9825 7.5188 24 1 10.2948 7.6741 7.9065 25 6 7.5304 4.2694 4.3834 26 1 7.2962 3.6490 5.2485 27 6 8.0449 3.4720 3.2221 28 6 8.5930 4.3227 2.0745 29 6 8.9740 2.3223 3.6169 30 7 3.6194 -0.6168 -0.0048 31 7 2.2964 -1.0881 0.0005 32 1 2.0093 -2.0146 0.0006 33 1 -0.3633 -0.0003 -1.0277 34 1 -0.3634 -0.8898 0.5142 35 1 -0.3634 0.8902 0.5135 36 1 4.4704 2.5471 -0.5124 37 1 5.5746 1.1511 -0.5123 38 1 6.6649 3.1476 0.9323 39 1 4.2384 5.0110 3.7469 40 1 5.0294 4.2705 5.1687 41 1 5.6084 7.0296 3.9806 42 1 4.8015 6.7052 5.5243 43 1 6.8060 5.8831 6.5213 44 1 7.2471 7.3794 5.6770 45 1 11.1388 8.4990 5.4101 46 1 9.5363 4.7771 2.3774 47 1 8.7575 3.6918 1.2011 48 1 7.8755 5.1053 1.8277 49 1 8.4400 1.6313 4.2691 50 1 9.3022 1.7963 2.7204 51 1 9.8419 2.7205 4.1424 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087284459.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:33 Heat of formation + Delta-G solvation = 93.329333 kcal Electronic energy + Delta-G solvation = -31739.233107 eV Core-core repulsion = 27676.726142 eV Total energy + Delta-G solvation = -4062.506965 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -43.15488 -42.52521 -40.14333 -37.15626 -34.82677 -34.69682 -34.41718 -33.33732 -32.70660 -31.06872 -30.69085 -28.66436 -28.59419 -27.45747 -26.34866 -23.92698 -23.25438 -22.30257 -21.65819 -21.21837 -20.94525 -19.76213 -18.86478 -18.69663 -18.03635 -17.24301 -17.00863 -16.52463 -16.24092 -15.84666 -15.46768 -15.41720 -15.19492 -15.07360 -14.86916 -14.57115 -14.47885 -14.26986 -14.15378 -13.65447 -13.59927 -13.54673 -13.37495 -13.11650 -13.06462 -12.87001 -12.74315 -12.72943 -12.67255 -12.31693 -12.01689 -11.99219 -11.65147 -11.50409 -11.38867 -11.26246 -11.22753 -11.08406 -10.88758 -10.70929 -10.43706 -10.25973 -9.82529 -8.66784 -8.07708 -5.39834 0.58200 1.29424 1.41044 1.48227 1.66145 1.66324 1.76745 2.37589 2.46776 3.02844 3.10878 3.19787 3.40946 3.55749 3.66687 3.81359 3.83842 3.95793 4.04366 4.11026 4.30568 4.38941 4.43067 4.44385 4.45688 4.57081 4.64077 4.69387 4.71537 4.77851 4.83560 4.89683 4.97655 5.02195 5.06222 5.07183 5.14594 5.17577 5.19926 5.24868 5.26257 5.33146 5.37703 5.45164 5.48141 5.57671 5.75582 5.96509 6.22227 6.35935 6.63435 6.95090 7.08868 7.30349 7.68607 8.23364 9.11301 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022145 B = 0.002535 C = 0.002392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1264.074343 B =11044.671259 C =11703.312116 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.569 5.569 4 C 0.237 3.763 5 C -0.047 4.047 6 C 0.524 3.476 7 O -0.582 6.582 8 N -0.697 5.697 9 C 0.162 3.838 10 H 0.103 0.897 11 C -0.154 4.154 12 H 0.097 0.903 13 C -0.087 4.087 14 C -0.121 4.121 15 C 0.121 3.879 16 N -0.597 5.597 17 C -0.224 4.224 18 H 0.089 0.911 19 C -0.036 4.036 20 N -0.958 5.958 21 Si 0.930 3.070 22 H -0.282 1.282 23 H -0.268 1.268 24 H -0.317 1.317 25 C 0.127 3.873 26 H 0.050 0.950 27 C -0.059 4.059 28 C -0.122 4.122 29 C -0.131 4.131 30 N -0.338 5.338 31 N -0.476 5.476 32 H 0.454 0.546 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.145 0.855 37 H 0.145 0.855 38 H 0.416 0.584 39 H 0.062 0.938 40 H 0.054 0.946 41 H 0.056 0.944 42 H 0.075 0.925 43 H 0.021 0.979 44 H 0.047 0.953 45 H 0.257 0.743 46 H 0.051 0.949 47 H 0.079 0.921 48 H 0.059 0.941 49 H 0.055 0.945 50 H 0.072 0.928 51 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.426 -17.106 -13.415 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.299 5.299 4 C -0.046 4.046 5 C -0.089 4.089 6 C 0.310 3.690 7 O -0.461 6.461 8 N -0.349 5.349 9 C 0.057 3.943 10 H 0.121 0.879 11 C -0.175 4.175 12 H 0.115 0.885 13 C -0.125 4.125 14 C -0.160 4.160 15 C -0.003 4.003 16 N -0.321 5.321 17 C -0.353 4.353 18 H 0.106 0.894 19 C -0.230 4.230 20 N -0.606 5.606 21 Si 0.761 3.239 22 H -0.209 1.209 23 H -0.193 1.193 24 H -0.247 1.247 25 C 0.020 3.980 26 H 0.068 0.932 27 C -0.060 4.060 28 C -0.179 4.179 29 C -0.188 4.188 30 N -0.168 5.168 31 N -0.196 5.196 32 H 0.303 0.697 33 H 0.132 0.868 34 H 0.128 0.872 35 H 0.114 0.886 36 H 0.163 0.837 37 H 0.163 0.837 38 H 0.254 0.746 39 H 0.081 0.919 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.094 0.906 43 H 0.039 0.961 44 H 0.065 0.935 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.098 0.902 48 H 0.078 0.922 49 H 0.074 0.926 50 H 0.091 0.909 51 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -19.149 -17.349 -12.735 28.807 hybrid contribution 0.289 0.273 1.285 1.345 sum -18.861 -17.076 -11.450 27.900 Atomic orbital electron populations 1.20636 0.80218 1.06277 1.06192 1.25227 0.98285 0.82081 0.93762 1.70307 1.01754 1.31293 1.26576 1.23682 0.93428 0.90086 0.97431 1.20045 0.94168 0.99967 0.94724 1.20613 0.79583 0.77698 0.91127 1.90697 1.54165 1.53441 1.47814 1.45745 1.32339 1.47985 1.08786 1.21840 0.93816 0.94912 0.83782 0.87873 1.23269 0.97955 0.96735 0.99512 0.88460 1.21097 0.97485 0.95654 0.98226 1.21872 0.95978 0.97609 1.00506 1.21496 0.89711 0.95414 0.93727 1.44261 1.12471 1.10087 1.65238 1.19251 0.93871 1.18311 1.03911 0.89407 1.25885 0.97129 0.99478 1.00514 1.69901 1.29727 1.24291 1.36645 0.86142 0.75732 0.78060 0.83958 1.20947 1.19251 1.24670 1.21661 0.95841 0.86800 0.93721 0.93250 1.21884 0.93332 0.95223 0.95551 1.21717 1.01352 0.98609 0.96225 1.21674 0.98782 0.96736 1.01615 1.77851 0.98750 1.12543 1.27613 1.47866 1.03322 1.10956 1.57452 0.69712 0.86782 0.87183 0.88610 0.83681 0.83684 0.74602 0.91885 0.92725 0.92472 0.90596 0.96062 0.93494 0.93426 0.93046 0.90188 0.92175 0.92557 0.90878 0.93720 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.47 10.51 71.24 0.75 0.28 16 2 C 0.28 4.97 8.24 138.23 1.14 6.11 16 3 N -0.57 -14.10 11.19 -179.72 -2.01 -16.11 16 4 C 0.24 5.90 6.63 138.63 0.92 6.82 16 5 C -0.05 -0.89 6.33 29.10 0.18 -0.70 16 6 C 0.52 13.38 7.82 87.66 0.69 14.07 16 7 O -0.58 -20.51 15.63 -3.01 -0.05 -20.56 16 8 N -0.70 -15.70 5.30 -455.79 -2.42 -18.12 16 9 C 0.16 4.60 3.54 42.24 0.15 4.75 16 10 H 0.10 3.29 7.39 -2.38 -0.02 3.27 16 11 C -0.15 -4.88 2.79 -15.90 -0.04 -4.93 16 12 H 0.10 3.23 5.76 -2.39 -0.01 3.21 16 13 C -0.09 -2.74 6.10 30.38 0.19 -2.55 16 14 C -0.12 -4.10 5.92 30.94 0.18 -3.91 16 15 C 0.12 5.14 4.25 85.99 0.37 5.50 16 16 N -0.60 -27.08 2.65 -689.11 -1.83 -28.91 16 17 C -0.22 -11.99 9.78 84.03 0.82 -11.16 16 18 H 0.09 4.87 4.91 -2.91 -0.01 4.86 16 19 C -0.04 -2.08 5.33 84.86 0.45 -1.62 16 20 N -0.96 -59.32 13.97 21.65 0.30 -59.02 16 21 Si 0.93 47.23 24.42 68.60 1.68 48.90 16 22 H -0.28 -13.78 6.66 99.48 0.66 -13.12 16 23 H -0.27 -13.23 6.47 99.48 0.64 -12.59 16 24 H -0.32 -16.59 7.11 99.48 0.71 -15.88 16 25 C 0.13 4.76 3.08 42.87 0.13 4.89 16 26 H 0.05 1.92 8.00 -2.39 -0.02 1.91 16 27 C -0.06 -1.79 1.36 -56.70 -0.08 -1.87 16 28 C -0.12 -3.65 7.18 71.98 0.52 -3.13 16 29 C -0.13 -3.76 9.29 71.98 0.67 -3.09 16 30 N -0.34 -8.37 12.80 -51.33 -0.66 -9.03 16 31 N -0.48 -8.16 7.45 -50.71 -0.38 -8.54 16 32 H 0.45 4.03 8.96 -213.10 -1.91 2.12 16 33 H 0.11 0.26 8.14 -2.39 -0.02 0.24 16 34 H 0.11 0.10 8.14 -2.39 -0.02 0.08 16 35 H 0.10 0.73 8.14 -2.38 -0.02 0.71 16 36 H 0.15 2.00 8.14 -2.39 -0.02 1.98 16 37 H 0.15 1.84 8.14 -2.39 -0.02 1.82 16 38 H 0.42 6.94 7.36 -92.70 -0.68 6.26 16 39 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 40 H 0.05 1.73 8.06 -2.38 -0.02 1.71 16 41 H 0.06 1.96 8.14 -2.38 -0.02 1.94 16 42 H 0.08 2.23 8.14 -2.39 -0.02 2.21 16 43 H 0.02 0.91 6.94 -2.38 -0.02 0.90 16 44 H 0.05 2.19 4.83 -2.39 -0.01 2.18 16 45 H 0.26 15.37 8.31 -92.71 -0.77 14.60 16 46 H 0.05 1.92 5.57 -2.39 -0.01 1.91 16 47 H 0.08 1.75 7.73 -2.39 -0.02 1.73 16 48 H 0.06 1.85 5.81 -2.39 -0.01 1.83 16 49 H 0.06 1.54 8.05 -2.39 -0.02 1.52 16 50 H 0.07 1.75 8.14 -2.39 -0.02 1.73 16 51 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 Total: -1.00 -81.49 390.92 -0.05 -81.54 By element: Atomic # 1 Polarization: 22.11 SS G_CDS: -1.72 Total: 20.39 kcal Atomic # 6 Polarization: 2.42 SS G_CDS: 7.03 Total: 9.45 kcal Atomic # 7 Polarization: -132.73 SS G_CDS: -6.99 Total: -139.72 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.05 Total: -20.56 kcal Atomic # 14 Polarization: 47.23 SS G_CDS: 1.68 Total: 48.90 kcal Total: -81.49 -0.05 -81.54 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284459.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.868 kcal (2) G-P(sol) polarization free energy of solvation -81.491 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 93.377 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.048 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.329 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds