Wall clock time and date at job start Wed Apr 1 2020 05:29:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 125.96494 * 2 1 4 4 C 1.33239 * 109.83114 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.52872 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46720 * 89.99953 * 5 4 3 7 7 O 1.21278 * 120.00636 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99749 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00128 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.92458 * 26.81523 * 9 8 6 11 11 C 1.54151 * 113.63543 * 255.49717 * 9 8 6 12 12 H 1.08997 * 114.74000 * 26.75365 * 11 9 8 13 13 C 1.53063 * 111.68929 * 157.46663 * 11 9 8 14 14 C 1.53015 * 109.41204 * 146.39865 * 13 11 9 15 15 C 1.52950 * 108.93444 * 295.35580 * 14 13 11 16 16 N 1.45892 * 109.88862 * 57.34314 * 15 14 13 17 17 C 1.36931 * 118.48712 * 140.63901 * 16 15 14 18 18 H 1.08000 * 120.00452 * 206.46045 * 17 16 15 19 19 C 1.38814 * 119.99875 * 26.45194 * 17 16 15 20 20 N 1.31618 * 119.99851 * 16.28103 * 19 17 16 21 21 Si 1.86804 * 120.00193 * 196.27721 * 19 17 16 22 22 H 1.48505 * 109.46822 * 265.24231 * 21 19 17 23 23 H 1.48501 * 109.47031 * 145.24151 * 21 19 17 24 24 H 1.48499 * 109.46830 * 25.24028 * 21 19 17 25 25 C 1.45098 * 123.03062 * 320.92118 * 16 15 14 26 26 H 1.08997 * 112.25630 * 156.83996 * 25 16 15 27 27 C 1.53260 * 113.44243 * 158.32552 * 9 8 6 28 28 C 1.53008 * 113.63870 * 333.96188 * 27 9 8 29 29 C 1.52998 * 113.58888 * 203.06743 * 27 9 8 30 30 N 1.30716 * 108.94483 * 0.26201 * 4 3 2 31 31 N 1.34434 * 125.95667 * 179.97438 * 2 1 3 32 32 H 0.97000 * 126.82581 * 0.02562 * 31 2 1 33 33 H 1.09004 * 109.46850 * 90.02499 * 1 2 3 34 34 H 1.08997 * 109.47623 * 210.02725 * 1 2 3 35 35 H 1.09008 * 109.46952 * 330.03264 * 1 2 3 36 36 H 1.09002 * 109.46912 * 330.00305 * 5 4 3 37 37 H 1.08996 * 109.46809 * 210.00076 * 5 4 3 38 38 H 0.97003 * 119.99564 * 359.97438 * 8 6 5 39 39 H 1.09003 * 109.47836 * 26.41762 * 13 11 9 40 40 H 1.08997 * 109.47871 * 266.38546 * 13 11 9 41 41 H 1.08996 * 109.56098 * 175.52356 * 14 13 11 42 42 H 1.08996 * 109.65343 * 55.24349 * 14 13 11 43 43 H 1.09002 * 109.39753 * 297.21779 * 15 14 13 44 44 H 1.09002 * 109.40268 * 177.47000 * 15 14 13 45 45 H 0.97003 * 120.00361 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.47052 * 157.34626 * 28 27 9 47 47 H 1.08997 * 109.46686 * 277.34480 * 28 27 9 48 48 H 1.08998 * 109.47113 * 37.34563 * 28 27 9 49 49 H 1.09000 * 109.46923 * 290.76208 * 29 27 9 50 50 H 1.09010 * 109.46763 * 50.75497 * 29 27 9 51 51 H 1.08991 * 109.47740 * 170.75803 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6235 0.0002 6 6 5.1309 1.9360 1.4209 7 8 4.5129 1.4474 2.3429 8 7 6.1699 2.7585 1.6669 9 6 6.5530 3.0619 3.0480 10 1 6.2828 2.2706 3.7472 11 6 6.1274 4.4688 3.5125 12 1 5.2542 4.8734 3.0008 13 6 6.0301 4.5557 5.0376 14 6 6.4379 5.9580 5.4941 15 6 7.9124 6.1813 5.1546 16 7 8.1255 5.9971 3.7231 17 6 8.9867 6.8431 3.0768 18 1 8.8640 7.0356 2.0212 19 6 10.0173 7.4534 3.7784 20 7 10.3721 6.9933 4.9594 21 14 10.9007 8.9276 3.0464 22 1 12.1229 8.4703 2.3375 23 1 11.2804 9.8665 4.1324 24 1 10.0011 9.6176 2.0874 25 6 7.4624 4.9625 2.9515 26 1 7.4116 5.2074 1.8906 27 6 8.0006 3.5456 3.1870 28 6 8.9239 3.0460 2.0739 29 6 8.5851 3.3345 4.5851 30 7 3.6194 -0.6169 -0.0047 31 7 2.2964 -1.0882 0.0005 32 1 2.0092 -2.0147 0.0006 33 1 -0.3633 -0.0004 -1.0277 34 1 -0.3634 -0.8897 0.5142 35 1 -0.3633 0.8903 0.5134 36 1 4.4703 2.5466 -0.5143 37 1 5.5744 1.1504 -0.5131 38 1 6.6645 3.1490 0.9294 39 1 6.6962 3.8191 5.4868 40 1 5.0046 4.3560 5.3483 41 1 6.2938 6.0476 6.5708 42 1 5.8286 6.7022 4.9812 43 1 8.5232 5.4669 5.7065 44 1 8.1994 7.1946 5.4359 45 1 11.0925 7.4195 5.4496 46 1 9.7841 3.7101 1.9899 47 1 9.2648 2.0379 2.3099 48 1 8.3805 3.0339 1.1291 49 1 8.0937 4.0057 5.2894 50 1 8.4235 2.3017 4.8943 51 1 9.6542 3.5455 4.5677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087284461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:43 Heat of formation + Delta-G solvation = 106.162193 kcal Electronic energy + Delta-G solvation = -31832.742269 eV Core-core repulsion = 27770.791778 eV Total energy + Delta-G solvation = -4061.950491 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.34798 -40.89421 -38.87607 -35.31905 -33.84916 -33.20642 -32.59227 -32.54501 -30.48981 -30.10799 -29.59609 -27.95343 -26.78943 -25.36759 -24.56028 -22.42113 -22.10642 -21.32085 -20.83861 -20.03539 -19.25268 -18.13551 -17.56202 -17.09168 -16.72022 -15.88483 -15.69651 -15.26513 -14.80535 -14.47990 -14.43421 -13.95586 -13.85307 -13.79838 -13.51653 -13.16194 -13.07353 -13.03903 -12.64401 -12.47158 -12.29155 -12.08312 -12.02709 -11.99384 -11.58766 -11.32788 -11.12008 -11.00104 -10.81491 -10.71009 -10.45115 -10.36294 -10.21712 -10.20543 -9.93680 -9.89260 -9.70625 -9.51298 -9.47680 -9.33663 -9.03036 -8.54300 -8.31673 -6.61034 -5.75614 -3.18456 1.37087 2.38299 2.58236 2.75282 3.37270 3.38197 3.45490 3.47282 3.76206 4.29104 4.50042 4.51012 4.87077 4.92771 5.00434 5.06150 5.15514 5.18879 5.34777 5.38620 5.41575 5.43328 5.52709 5.66211 5.76685 5.88288 6.00279 6.01389 6.09323 6.18540 6.19849 6.23536 6.29803 6.38184 6.48023 6.51685 6.62459 6.63805 6.69242 6.78988 6.80947 6.84794 6.88161 7.03916 7.18292 7.26155 7.46722 7.70190 7.77147 7.85964 7.89579 8.37783 8.48132 9.27640 9.93689 10.37566 11.30502 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.002446 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.696331 B =11445.026620 C =11696.737644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.530 5.530 4 C 0.255 3.745 5 C -0.052 4.052 6 C 0.522 3.478 7 O -0.534 6.534 8 N -0.704 5.704 9 C 0.127 3.873 10 H 0.093 0.907 11 C -0.128 4.128 12 H 0.069 0.931 13 C -0.107 4.107 14 C -0.143 4.143 15 C 0.178 3.822 16 N -0.569 5.569 17 C -0.260 4.260 18 H 0.064 0.936 19 C 0.007 3.993 20 N -0.900 5.900 21 Si 0.898 3.102 22 H -0.289 1.289 23 H -0.291 1.291 24 H -0.280 1.280 25 C 0.188 3.812 26 H 0.069 0.931 27 C -0.114 4.114 28 C -0.126 4.126 29 C -0.133 4.133 30 N -0.305 5.305 31 N -0.483 5.483 32 H 0.439 0.561 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.123 0.877 37 H 0.117 0.883 38 H 0.401 0.599 39 H 0.078 0.922 40 H 0.046 0.954 41 H 0.052 0.948 42 H 0.052 0.948 43 H 0.039 0.961 44 H 0.067 0.933 45 H 0.252 0.748 46 H 0.064 0.936 47 H 0.042 0.958 48 H 0.041 0.959 49 H 0.093 0.907 50 H 0.031 0.969 51 H 0.062 0.938 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.304 -13.701 -9.219 22.514 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.259 5.259 4 C -0.028 4.028 5 C -0.094 4.094 6 C 0.306 3.694 7 O -0.411 6.411 8 N -0.355 5.355 9 C 0.022 3.978 10 H 0.111 0.889 11 C -0.149 4.149 12 H 0.087 0.913 13 C -0.145 4.145 14 C -0.182 4.182 15 C 0.053 3.947 16 N -0.286 5.286 17 C -0.390 4.390 18 H 0.082 0.918 19 C -0.192 4.192 20 N -0.544 5.544 21 Si 0.728 3.272 22 H -0.216 1.216 23 H -0.217 1.217 24 H -0.206 1.206 25 C 0.078 3.922 26 H 0.087 0.913 27 C -0.118 4.118 28 C -0.183 4.183 29 C -0.190 4.190 30 N -0.134 5.134 31 N -0.202 5.202 32 H 0.284 0.716 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.117 0.883 36 H 0.141 0.859 37 H 0.135 0.865 38 H 0.238 0.762 39 H 0.096 0.904 40 H 0.065 0.935 41 H 0.071 0.929 42 H 0.071 0.929 43 H 0.057 0.943 44 H 0.086 0.914 45 H 0.062 0.938 46 H 0.083 0.917 47 H 0.061 0.939 48 H 0.060 0.940 49 H 0.111 0.889 50 H 0.050 0.950 51 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges -15.030 -13.972 -8.427 22.184 hybrid contribution 0.463 0.226 -0.764 0.922 sum -14.567 -13.746 -9.192 22.037 Atomic orbital electron populations 1.20391 0.83656 1.05131 1.04428 1.24368 0.96605 0.82782 0.95894 1.70305 1.01294 1.29521 1.24755 1.23247 0.92614 0.89674 0.97278 1.19930 0.93777 0.98978 0.96736 1.20084 0.80236 0.78805 0.90263 1.90715 1.52545 1.51765 1.46048 1.45748 1.32469 1.48204 1.09129 1.22182 0.96880 0.96765 0.82016 0.88927 1.23169 0.99393 0.95605 0.96725 0.91267 1.21558 1.00288 0.98777 0.93877 1.22055 1.01079 0.95935 0.99153 1.20639 0.88966 1.01269 0.83811 1.43215 1.48303 1.32268 1.04852 1.19203 1.05896 1.19531 0.94340 0.91838 1.24966 0.96703 1.00135 0.97369 1.70063 1.29888 1.40241 1.14231 0.86361 0.79603 0.83088 0.78174 1.21613 1.21681 1.20556 1.21202 0.89929 0.86434 0.94660 0.91295 1.22901 0.91662 1.00575 0.96669 1.21588 0.99784 1.00178 0.96797 1.21991 1.02156 0.99509 0.95308 1.77976 0.96653 1.12251 1.26542 1.47925 1.04285 1.09958 1.57995 0.71588 0.89020 0.89902 0.88253 0.85919 0.86454 0.76213 0.90358 0.93529 0.92933 0.92887 0.94350 0.91430 0.93762 0.91665 0.93918 0.93972 0.88923 0.94966 0.91908 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.37 10.51 36.01 0.38 0.01 16 2 C 0.28 2.83 8.24 -155.69 -1.28 1.55 16 3 N -0.53 -7.18 11.19 -8.16 -0.09 -7.28 16 4 C 0.26 3.52 6.63 -156.85 -1.04 2.48 16 5 C -0.05 -0.59 6.33 -29.04 -0.18 -0.77 16 6 C 0.52 7.74 7.82 -10.99 -0.09 7.65 16 7 O -0.53 -10.24 15.68 5.56 0.09 -10.16 16 8 N -0.70 -9.80 4.74 -53.10 -0.25 -10.05 16 9 C 0.13 2.10 3.29 -67.20 -0.22 1.88 16 10 H 0.09 1.68 7.42 -51.93 -0.39 1.29 16 11 C -0.13 -2.27 4.10 -89.99 -0.37 -2.64 16 12 H 0.07 1.25 8.14 -51.93 -0.42 0.82 16 13 C -0.11 -1.90 5.18 -26.69 -0.14 -2.04 16 14 C -0.14 -2.73 6.04 -26.75 -0.16 -2.89 16 15 C 0.18 4.07 4.01 -4.40 -0.02 4.05 16 16 N -0.57 -13.26 2.66 -166.98 -0.44 -13.70 16 17 C -0.26 -6.75 9.46 -15.06 -0.14 -6.89 16 18 H 0.06 1.63 7.84 -52.49 -0.41 1.22 16 19 C 0.01 0.19 4.85 -17.43 -0.08 0.10 16 20 N -0.90 -24.92 11.06 55.49 0.61 -24.31 16 21 Si 0.90 21.17 29.58 -169.99 -5.03 16.14 16 22 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 23 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.19 3.68 3.40 -68.49 -0.23 3.45 16 26 H 0.07 1.33 7.88 -51.93 -0.41 0.92 16 27 C -0.11 -2.01 1.32 -154.17 -0.20 -2.21 16 28 C -0.13 -2.03 8.95 37.16 0.33 -1.69 16 29 C -0.13 -2.51 7.33 37.16 0.27 -2.24 16 30 N -0.31 -4.13 12.80 32.42 0.41 -3.72 16 31 N -0.48 -4.72 7.45 32.62 0.24 -4.48 16 32 H 0.44 2.49 8.96 -182.33 -1.63 0.86 16 33 H 0.09 0.28 8.14 -51.93 -0.42 -0.14 16 34 H 0.08 0.20 8.14 -51.93 -0.42 -0.22 16 35 H 0.10 0.52 8.14 -51.92 -0.42 0.09 16 36 H 0.12 1.11 8.14 -51.93 -0.42 0.69 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.60 16 38 H 0.40 4.66 6.70 -40.82 -0.27 4.38 16 39 H 0.08 1.39 4.67 -51.93 -0.24 1.14 16 40 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 42 H 0.05 1.03 8.14 -51.93 -0.42 0.60 16 43 H 0.04 0.94 5.68 -51.93 -0.29 0.64 16 44 H 0.07 1.74 6.55 -51.93 -0.34 1.40 16 45 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 46 H 0.06 1.19 8.14 -51.93 -0.42 0.77 16 47 H 0.04 0.65 8.14 -51.93 -0.42 0.22 16 48 H 0.04 0.56 5.81 -51.93 -0.30 0.26 16 49 H 0.09 1.83 1.99 -51.93 -0.10 1.73 16 50 H 0.03 0.54 8.14 -51.92 -0.42 0.12 16 51 H 0.06 1.33 8.07 -51.93 -0.42 0.91 16 LS Contribution 391.52 15.07 5.90 5.90 Total: -1.00 -34.58 391.52 -10.76 -45.34 By element: Atomic # 1 Polarization: 15.55 SS G_CDS: -9.02 Total: 6.53 kcal Atomic # 6 Polarization: 2.97 SS G_CDS: -3.18 Total: -0.21 kcal Atomic # 7 Polarization: -64.02 SS G_CDS: 0.48 Total: -63.54 kcal Atomic # 8 Polarization: -10.24 SS G_CDS: 0.09 Total: -10.16 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.03 Total: 16.14 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -34.58 -10.76 -45.34 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 151.501 kcal (2) G-P(sol) polarization free energy of solvation -34.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 116.923 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.761 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.339 kcal (6) G-S(sol) free energy of system = (1) + (5) 106.162 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds