Wall clock time and date at job start Wed Apr 1 2020 05:29:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30830 * 125.96494 * 2 1 4 4 C 1.33239 * 109.83114 * 179.97438 * 3 2 1 5 5 C 1.50703 * 125.52872 * 179.97438 * 4 3 2 6 6 C 1.50696 * 109.46720 * 89.99953 * 5 4 3 7 7 O 1.21278 * 120.00636 * 0.02562 * 6 5 4 8 8 N 1.34781 * 119.99749 * 180.02562 * 6 5 4 9 9 C 1.46501 * 120.00128 * 180.02562 * 8 6 5 10 10 H 1.09001 * 112.92458 * 26.81523 * 9 8 6 11 11 C 1.54151 * 113.63543 * 255.49717 * 9 8 6 12 12 H 1.08997 * 114.74000 * 26.75365 * 11 9 8 13 13 C 1.53063 * 111.68929 * 157.46663 * 11 9 8 14 14 C 1.53015 * 109.41204 * 146.39865 * 13 11 9 15 15 C 1.52950 * 108.93444 * 295.35580 * 14 13 11 16 16 N 1.45892 * 109.88862 * 57.34314 * 15 14 13 17 17 C 1.36931 * 118.48712 * 140.63901 * 16 15 14 18 18 H 1.08000 * 120.00452 * 206.46045 * 17 16 15 19 19 C 1.38814 * 119.99875 * 26.45194 * 17 16 15 20 20 N 1.31618 * 119.99851 * 16.28103 * 19 17 16 21 21 Si 1.86804 * 120.00193 * 196.27721 * 19 17 16 22 22 H 1.48505 * 109.46822 * 265.24231 * 21 19 17 23 23 H 1.48501 * 109.47031 * 145.24151 * 21 19 17 24 24 H 1.48499 * 109.46830 * 25.24028 * 21 19 17 25 25 C 1.45098 * 123.03062 * 320.92118 * 16 15 14 26 26 H 1.08997 * 112.25630 * 156.83996 * 25 16 15 27 27 C 1.53260 * 113.44243 * 158.32552 * 9 8 6 28 28 C 1.53008 * 113.63870 * 333.96188 * 27 9 8 29 29 C 1.52998 * 113.58888 * 203.06743 * 27 9 8 30 30 N 1.30716 * 108.94483 * 0.26201 * 4 3 2 31 31 N 1.34434 * 125.95667 * 179.97438 * 2 1 3 32 32 H 0.97000 * 126.82581 * 0.02562 * 31 2 1 33 33 H 1.09004 * 109.46850 * 90.02499 * 1 2 3 34 34 H 1.08997 * 109.47623 * 210.02725 * 1 2 3 35 35 H 1.09008 * 109.46952 * 330.03264 * 1 2 3 36 36 H 1.09002 * 109.46912 * 330.00305 * 5 4 3 37 37 H 1.08996 * 109.46809 * 210.00076 * 5 4 3 38 38 H 0.97003 * 119.99564 * 359.97438 * 8 6 5 39 39 H 1.09003 * 109.47836 * 26.41762 * 13 11 9 40 40 H 1.08997 * 109.47871 * 266.38546 * 13 11 9 41 41 H 1.08996 * 109.56098 * 175.52356 * 14 13 11 42 42 H 1.08996 * 109.65343 * 55.24349 * 14 13 11 43 43 H 1.09002 * 109.39753 * 297.21779 * 15 14 13 44 44 H 1.09002 * 109.40268 * 177.47000 * 15 14 13 45 45 H 0.97003 * 120.00361 * 179.97438 * 20 19 17 46 46 H 1.08996 * 109.47052 * 157.34626 * 28 27 9 47 47 H 1.08997 * 109.46686 * 277.34480 * 28 27 9 48 48 H 1.08998 * 109.47113 * 37.34563 * 28 27 9 49 49 H 1.09000 * 109.46923 * 290.76208 * 29 27 9 50 50 H 1.09010 * 109.46763 * 50.75497 * 29 27 9 51 51 H 1.08991 * 109.47740 * 170.75803 * 29 27 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6887 0.0006 5 6 4.7373 1.6235 0.0002 6 6 5.1309 1.9360 1.4209 7 8 4.5129 1.4474 2.3429 8 7 6.1699 2.7585 1.6669 9 6 6.5530 3.0619 3.0480 10 1 6.2828 2.2706 3.7472 11 6 6.1274 4.4688 3.5125 12 1 5.2542 4.8734 3.0008 13 6 6.0301 4.5557 5.0376 14 6 6.4379 5.9580 5.4941 15 6 7.9124 6.1813 5.1546 16 7 8.1255 5.9971 3.7231 17 6 8.9867 6.8431 3.0768 18 1 8.8640 7.0356 2.0212 19 6 10.0173 7.4534 3.7784 20 7 10.3721 6.9933 4.9594 21 14 10.9007 8.9276 3.0464 22 1 12.1229 8.4703 2.3375 23 1 11.2804 9.8665 4.1324 24 1 10.0011 9.6176 2.0874 25 6 7.4624 4.9625 2.9515 26 1 7.4116 5.2074 1.8906 27 6 8.0006 3.5456 3.1870 28 6 8.9239 3.0460 2.0739 29 6 8.5851 3.3345 4.5851 30 7 3.6194 -0.6169 -0.0047 31 7 2.2964 -1.0882 0.0005 32 1 2.0092 -2.0147 0.0006 33 1 -0.3633 -0.0004 -1.0277 34 1 -0.3634 -0.8897 0.5142 35 1 -0.3633 0.8903 0.5134 36 1 4.4703 2.5466 -0.5143 37 1 5.5744 1.1504 -0.5131 38 1 6.6645 3.1490 0.9294 39 1 6.6962 3.8191 5.4868 40 1 5.0046 4.3560 5.3483 41 1 6.2938 6.0476 6.5708 42 1 5.8286 6.7022 4.9812 43 1 8.5232 5.4669 5.7065 44 1 8.1994 7.1946 5.4359 45 1 11.0925 7.4195 5.4496 46 1 9.7841 3.7101 1.9899 47 1 9.2648 2.0379 2.3099 48 1 8.3805 3.0339 1.1291 49 1 8.0937 4.0057 5.2894 50 1 8.4235 2.3017 4.8943 51 1 9.6542 3.5455 4.5677 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087284461.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:42 Heat of formation + Delta-G solvation = 83.407611 kcal Electronic energy + Delta-G solvation = -31833.728981 eV Core-core repulsion = 27770.791778 eV Total energy + Delta-G solvation = -4062.937203 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -43.16629 -42.34508 -40.14566 -36.96143 -34.85133 -34.64819 -33.96558 -33.34778 -32.25389 -31.44798 -30.70802 -28.66822 -28.24023 -27.14315 -26.11245 -24.06597 -23.22941 -22.50786 -21.95414 -21.09297 -20.75786 -19.15659 -18.81172 -18.67190 -18.15199 -17.23749 -16.58971 -16.55801 -16.35570 -16.00287 -15.56619 -15.42830 -15.23627 -14.92931 -14.64147 -14.49233 -14.12610 -14.07013 -13.71469 -13.64320 -13.60984 -13.50597 -13.19376 -13.12982 -12.91848 -12.80039 -12.73792 -12.72452 -12.53407 -12.40788 -12.07575 -11.96085 -11.54712 -11.40634 -11.25752 -11.10468 -11.09529 -10.96671 -10.89099 -10.61828 -10.44204 -10.30065 -9.84228 -8.51422 -7.76436 -5.20749 0.56847 1.47914 1.51229 1.59094 1.61739 1.63911 1.75428 2.32452 2.56655 3.02637 3.35808 3.54272 3.60291 3.69639 3.78955 3.83868 3.95365 4.00824 4.07423 4.29970 4.40730 4.43438 4.44823 4.52074 4.61729 4.71409 4.72489 4.76212 4.78315 4.83677 4.93338 4.96955 5.03813 5.06128 5.13483 5.14075 5.17362 5.24862 5.32083 5.34055 5.36029 5.44275 5.55338 5.58863 5.66376 5.74367 5.79190 5.99880 6.21740 6.47664 6.57610 7.07695 7.25566 7.28230 8.05774 8.42662 9.26837 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020558 B = 0.002446 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1361.696331 B =11445.026620 C =11696.737644 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.285 3.715 3 N -0.569 5.569 4 C 0.237 3.763 5 C -0.046 4.046 6 C 0.525 3.475 7 O -0.580 6.580 8 N -0.694 5.694 9 C 0.147 3.853 10 H 0.083 0.917 11 C -0.123 4.123 12 H 0.071 0.929 13 C -0.104 4.104 14 C -0.133 4.133 15 C 0.188 3.812 16 N -0.581 5.581 17 C -0.261 4.261 18 H 0.065 0.935 19 C -0.043 4.043 20 N -0.928 5.928 21 Si 0.955 3.045 22 H -0.289 1.289 23 H -0.298 1.298 24 H -0.273 1.273 25 C 0.176 3.824 26 H 0.074 0.926 27 C -0.110 4.110 28 C -0.122 4.122 29 C -0.128 4.128 30 N -0.338 5.338 31 N -0.475 5.475 32 H 0.455 0.545 33 H 0.114 0.886 34 H 0.110 0.890 35 H 0.095 0.905 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.415 0.585 39 H 0.078 0.922 40 H 0.064 0.936 41 H 0.070 0.930 42 H 0.050 0.950 43 H 0.019 0.981 44 H 0.030 0.970 45 H 0.246 0.754 46 H 0.039 0.961 47 H 0.052 0.948 48 H 0.072 0.928 49 H 0.083 0.917 50 H 0.050 0.950 51 H 0.031 0.969 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.311 -14.931 -11.065 25.398 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.007 3.993 3 N -0.299 5.299 4 C -0.046 4.046 5 C -0.088 4.088 6 C 0.311 3.689 7 O -0.459 6.459 8 N -0.346 5.346 9 C 0.040 3.960 10 H 0.101 0.899 11 C -0.144 4.144 12 H 0.090 0.910 13 C -0.142 4.142 14 C -0.171 4.171 15 C 0.063 3.937 16 N -0.299 5.299 17 C -0.392 4.392 18 H 0.082 0.918 19 C -0.239 4.239 20 N -0.574 5.574 21 Si 0.785 3.215 22 H -0.217 1.217 23 H -0.224 1.224 24 H -0.198 1.198 25 C 0.067 3.933 26 H 0.092 0.908 27 C -0.114 4.114 28 C -0.179 4.179 29 C -0.185 4.185 30 N -0.167 5.167 31 N -0.195 5.195 32 H 0.303 0.697 33 H 0.132 0.868 34 H 0.129 0.871 35 H 0.114 0.886 36 H 0.164 0.836 37 H 0.163 0.837 38 H 0.254 0.746 39 H 0.096 0.904 40 H 0.082 0.918 41 H 0.088 0.912 42 H 0.068 0.932 43 H 0.037 0.963 44 H 0.049 0.951 45 H 0.055 0.945 46 H 0.058 0.942 47 H 0.071 0.929 48 H 0.090 0.910 49 H 0.101 0.899 50 H 0.069 0.931 51 H 0.050 0.950 Dipole moment (debyes) X Y Z Total from point charges -17.059 -15.234 -10.326 25.094 hybrid contribution 0.998 0.544 -0.202 1.154 sum -16.061 -14.690 -10.528 24.179 Atomic orbital electron populations 1.20642 0.80131 1.06309 1.06220 1.25242 0.98310 0.82039 0.93711 1.70301 1.01715 1.31348 1.26576 1.23639 0.93397 0.90075 0.97532 1.20027 0.94267 1.00092 0.94432 1.20637 0.79332 0.77667 0.91267 1.90697 1.53997 1.53427 1.47775 1.45614 1.32519 1.48055 1.08402 1.21796 0.95281 0.95574 0.83344 0.89935 1.23131 0.98291 0.96203 0.96825 0.91035 1.21528 1.01222 0.97591 0.93827 1.21914 0.98007 0.96875 1.00330 1.20379 0.91169 0.98462 0.83699 1.43359 1.48259 1.33276 1.05022 1.19489 1.05730 1.19504 0.94480 0.91750 1.25596 0.97880 1.02473 0.97973 1.70210 1.30458 1.41287 1.15412 0.85449 0.78535 0.80320 0.77233 1.21652 1.22442 1.19769 1.21443 0.90927 0.86393 0.94566 0.90814 1.22748 0.92877 0.99251 0.96518 1.21549 0.98822 0.99943 0.97624 1.21904 1.00018 1.00410 0.96163 1.77856 0.98808 1.12504 1.27562 1.47864 1.03273 1.10971 1.57435 0.69670 0.86751 0.87118 0.88599 0.83553 0.83654 0.74609 0.90397 0.91776 0.91174 0.93159 0.96314 0.95114 0.94509 0.94219 0.92885 0.90970 0.89885 0.93061 0.94970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.51 10.51 71.24 0.75 0.24 16 2 C 0.28 5.18 8.24 138.22 1.14 6.32 16 3 N -0.57 -14.64 11.19 -179.72 -2.01 -16.65 16 4 C 0.24 6.17 6.63 138.63 0.92 7.09 16 5 C -0.05 -0.94 6.33 29.10 0.18 -0.76 16 6 C 0.52 14.49 7.82 87.66 0.69 15.18 16 7 O -0.58 -21.54 15.68 -3.02 -0.05 -21.59 16 8 N -0.69 -17.62 4.74 -440.29 -2.09 -19.70 16 9 C 0.15 4.58 3.29 45.46 0.15 4.73 16 10 H 0.08 2.85 7.42 -2.39 -0.02 2.84 16 11 C -0.12 -4.21 4.10 -10.38 -0.04 -4.25 16 12 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 13 C -0.10 -3.55 5.18 30.62 0.16 -3.39 16 14 C -0.13 -4.99 6.04 30.58 0.18 -4.80 16 15 C 0.19 8.82 4.01 86.48 0.35 9.16 16 16 N -0.58 -27.36 2.66 -682.20 -1.82 -29.18 16 17 C -0.26 -13.73 9.46 84.03 0.80 -12.93 16 18 H 0.06 3.31 7.84 -2.91 -0.02 3.28 16 19 C -0.04 -2.36 4.85 84.86 0.41 -1.95 16 20 N -0.93 -53.17 11.06 21.65 0.24 -52.94 16 21 Si 0.96 44.30 29.58 68.60 2.03 46.33 16 22 H -0.29 -13.33 7.11 99.48 0.71 -12.62 16 23 H -0.30 -14.04 7.11 99.48 0.71 -13.33 16 24 H -0.27 -12.17 7.11 99.48 0.71 -11.47 16 25 C 0.18 6.73 3.40 45.38 0.15 6.89 16 26 H 0.07 2.74 7.88 -2.39 -0.02 2.72 16 27 C -0.11 -3.78 1.32 -51.96 -0.07 -3.85 16 28 C -0.12 -3.75 8.95 71.98 0.64 -3.10 16 29 C -0.13 -4.86 7.33 71.98 0.53 -4.33 16 30 N -0.34 -8.70 12.80 -51.33 -0.66 -9.35 16 31 N -0.48 -8.49 7.45 -50.70 -0.38 -8.86 16 32 H 0.45 4.29 8.96 -213.10 -1.91 2.38 16 33 H 0.11 0.31 8.14 -2.38 -0.02 0.29 16 34 H 0.11 0.14 8.14 -2.39 -0.02 0.13 16 35 H 0.10 0.78 8.14 -2.38 -0.02 0.76 16 36 H 0.15 2.23 8.14 -2.39 -0.02 2.21 16 37 H 0.15 2.08 8.14 -2.39 -0.02 2.06 16 38 H 0.41 8.31 6.70 -92.71 -0.62 7.69 16 39 H 0.08 2.69 4.67 -2.39 -0.01 2.68 16 40 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 41 H 0.07 2.37 8.14 -2.39 -0.02 2.35 16 42 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 43 H 0.02 0.96 5.68 -2.39 -0.01 0.95 16 44 H 0.03 1.64 6.55 -2.39 -0.02 1.63 16 45 H 0.25 13.85 8.31 -92.71 -0.77 13.08 16 46 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 47 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 48 H 0.07 1.74 5.81 -2.39 -0.01 1.72 16 49 H 0.08 3.33 1.99 -2.39 0.00 3.32 16 50 H 0.05 1.70 8.14 -2.38 -0.02 1.68 16 51 H 0.03 1.39 8.07 -2.39 -0.02 1.37 16 Total: -1.00 -77.48 391.52 0.66 -76.82 By element: Atomic # 1 Polarization: 26.44 SS G_CDS: -1.55 Total: 24.89 kcal Atomic # 6 Polarization: 3.30 SS G_CDS: 6.94 Total: 10.24 kcal Atomic # 7 Polarization: -129.98 SS G_CDS: -6.71 Total: -136.69 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.05 Total: -21.59 kcal Atomic # 14 Polarization: 44.30 SS G_CDS: 2.03 Total: 46.33 kcal Total: -77.48 0.66 -76.82 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284461.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.226 kcal (2) G-P(sol) polarization free energy of solvation -77.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 82.746 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.661 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.818 kcal (6) G-S(sol) free energy of system = (1) + (5) 83.408 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds