Wall clock time and date at job start Wed Apr 1 2020 05:29:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30827 * 125.96681 * 2 1 4 4 C 1.33238 * 109.83157 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52546 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47331 * 90.00106 * 5 4 3 7 7 O 1.21282 * 119.99837 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00048 * 180.02562 * 8 6 5 10 10 H 1.09001 * 113.22232 * 28.29883 * 9 8 6 11 11 C 1.50004 * 114.12387 * 255.49548 * 9 8 6 12 12 H 1.08995 * 112.50524 * 169.97692 * 11 9 8 13 13 C 1.51202 * 126.17080 * 27.58654 * 11 9 8 14 14 C 1.54097 * 106.19304 * 198.57422 * 13 11 9 15 15 C 1.52495 * 112.67371 * 55.43326 * 14 13 11 16 16 N 1.48407 * 111.87194 * 313.21595 * 15 14 13 17 17 C 1.36937 * 123.16965 * 231.84155 * 16 15 14 18 18 H 1.08003 * 119.99932 * 210.89523 * 17 16 15 19 19 C 1.38812 * 119.99902 * 30.88662 * 17 16 15 20 20 N 1.31615 * 120.00085 * 13.89400 * 19 17 16 21 21 Si 1.86804 * 119.99894 * 193.88946 * 19 17 16 22 22 H 1.48495 * 109.46980 * 90.00360 * 21 19 17 23 23 H 1.48494 * 109.46798 * 210.00616 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00338 * 21 19 17 25 25 C 1.45385 * 113.66454 * 51.83395 * 16 15 14 26 26 H 1.09004 * 112.08661 * 59.76328 * 25 16 15 27 27 C 1.49962 * 126.67031 * 204.97298 * 25 16 15 28 28 C 1.52999 * 114.08801 * 253.26738 * 27 25 16 29 29 C 1.52999 * 114.08390 * 25.69474 * 27 25 16 30 30 N 1.30715 * 108.94703 * 0.26587 * 4 3 2 31 31 N 1.34436 * 125.95816 * 180.02562 * 2 1 3 32 32 H 0.96993 * 126.81942 * 359.97438 * 31 2 1 33 33 H 1.08997 * 109.47038 * 89.97420 * 1 2 3 34 34 H 1.08999 * 109.47194 * 209.97795 * 1 2 3 35 35 H 1.09000 * 109.46528 * 329.97846 * 1 2 3 36 36 H 1.09003 * 109.46992 * 329.99638 * 5 4 3 37 37 H 1.09001 * 109.46941 * 209.99991 * 5 4 3 38 38 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 39 39 H 1.08996 * 110.10995 * 79.40267 * 13 11 9 40 40 H 1.08999 * 110.10224 * 317.73475 * 13 11 9 41 41 H 1.09002 * 108.83808 * 294.60920 * 14 13 11 42 42 H 1.09001 * 108.84079 * 176.26244 * 14 13 11 43 43 H 1.08997 * 109.00098 * 73.83156 * 15 14 13 44 44 H 1.08996 * 108.99828 * 192.60248 * 15 14 13 45 45 H 0.96998 * 119.99792 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47100 * 60.00376 * 28 27 25 47 47 H 1.08996 * 109.47454 * 180.02562 * 28 27 25 48 48 H 1.09004 * 109.47085 * 300.00690 * 28 27 25 49 49 H 1.09001 * 109.46690 * 67.14848 * 29 27 25 50 50 H 1.09000 * 109.46842 * 187.14283 * 29 27 25 51 51 H 1.08993 * 109.46867 * 307.14093 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6886 -0.0006 5 6 4.7373 1.6234 -0.0002 6 6 5.1317 1.9340 1.4207 7 8 4.5135 1.4449 2.3423 8 7 6.1714 2.7554 1.6672 9 6 6.5552 3.0570 3.0486 10 1 6.3099 2.2570 3.7472 11 6 6.1475 4.4236 3.5137 12 1 6.2867 4.5579 4.5864 13 6 4.9704 5.2249 3.0055 14 6 5.2368 6.6865 3.4146 15 6 6.5802 7.2026 2.9101 16 7 7.6766 6.2370 3.1707 17 6 8.8437 6.5805 3.7994 18 1 9.7619 6.0692 3.5504 19 6 8.8466 7.5858 4.7565 20 7 7.7100 8.0193 5.2591 21 14 10.4637 8.3235 5.3313 22 1 10.8122 9.4829 4.4714 23 1 10.3291 8.7744 6.7397 24 1 11.5352 7.2994 5.2397 25 6 7.3949 4.8921 2.6959 26 1 7.2193 4.8655 1.6205 27 6 7.9856 3.6162 3.2174 28 6 9.0164 2.9780 2.2841 29 6 8.4520 3.6930 4.6726 30 7 3.6194 -0.6170 -0.0067 31 7 2.2964 -1.0882 -0.0005 32 1 2.0092 -2.0146 -0.0006 33 1 -0.3633 0.0005 -1.0276 34 1 -0.3633 -0.8902 0.5135 35 1 -0.3632 0.8898 0.5142 36 1 4.4701 2.5472 -0.5134 37 1 5.5742 1.1511 -0.5146 38 1 6.6656 3.1469 0.9301 39 1 4.0484 4.8694 3.4654 40 1 4.9039 5.1459 1.9204 41 1 5.2187 6.7565 4.5022 42 1 4.4436 7.3154 3.0102 43 1 6.5116 7.3805 1.8369 44 1 6.8094 8.1434 3.4104 45 1 7.7121 8.7216 5.9282 46 1 9.8417 3.6721 2.1253 47 1 9.3947 2.0601 2.7340 48 1 8.5469 2.7469 1.3279 49 1 7.5874 3.8136 5.3253 50 1 8.9795 2.7757 4.9340 51 1 9.1214 4.5445 4.7950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001087284462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:49 Heat of formation + Delta-G solvation = 119.395887 kcal Electronic energy + Delta-G solvation = -32069.372911 eV Core-core repulsion = 28007.996276 eV Total energy + Delta-G solvation = -4061.376635 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -42.32106 -41.13534 -38.75679 -35.22274 -33.81763 -33.20450 -32.74877 -32.54988 -30.41206 -29.91352 -29.14142 -27.92975 -26.84364 -25.73629 -24.53144 -22.31005 -22.12078 -21.23635 -20.43669 -20.08067 -18.96855 -18.21655 -17.97083 -17.10530 -16.64274 -15.70129 -15.48688 -15.18610 -14.79148 -14.40648 -14.07478 -13.86523 -13.84424 -13.68764 -13.54590 -13.28411 -13.12003 -12.99573 -12.66200 -12.48381 -12.38252 -12.18944 -12.00875 -11.88637 -11.46683 -11.19880 -11.10187 -10.94895 -10.83638 -10.63552 -10.36906 -10.33280 -10.19941 -10.18354 -10.08604 -9.82915 -9.76979 -9.51383 -9.43011 -9.20934 -8.82474 -8.55111 -8.35150 -6.47865 -5.73574 -3.19031 1.39704 2.40845 2.61070 2.80304 3.38019 3.39338 3.45465 3.46207 3.78852 4.31788 4.49817 4.53067 4.87718 4.92682 4.95771 5.03443 5.06183 5.20196 5.30130 5.36653 5.41849 5.46192 5.52893 5.65874 5.94756 5.97607 6.00951 6.04954 6.11716 6.18302 6.21590 6.23031 6.41680 6.43231 6.45020 6.59194 6.65453 6.70091 6.75366 6.80985 6.83643 6.89819 7.05895 7.17664 7.19672 7.34251 7.55032 7.71581 7.76746 7.79530 7.92709 8.41898 8.49902 9.19501 9.85199 10.52991 11.32666 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.002627 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.960470 B =10657.534381 C =11371.127467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.282 3.718 3 N -0.528 5.528 4 C 0.256 3.744 5 C -0.051 4.051 6 C 0.524 3.476 7 O -0.532 6.532 8 N -0.700 5.700 9 C 0.138 3.862 10 H 0.091 0.909 11 C -0.166 4.166 12 H 0.104 0.896 13 C -0.084 4.084 14 C -0.121 4.121 15 C 0.157 3.843 16 N -0.570 5.570 17 C -0.234 4.234 18 H 0.065 0.935 19 C 0.002 3.998 20 N -0.896 5.896 21 Si 0.897 3.103 22 H -0.289 1.289 23 H -0.292 1.292 24 H -0.280 1.280 25 C 0.145 3.855 26 H 0.047 0.953 27 C -0.062 4.062 28 C -0.134 4.134 29 C -0.125 4.125 30 N -0.306 5.306 31 N -0.483 5.483 32 H 0.439 0.561 33 H 0.091 0.909 34 H 0.082 0.918 35 H 0.099 0.901 36 H 0.122 0.878 37 H 0.117 0.883 38 H 0.400 0.600 39 H 0.039 0.961 40 H 0.044 0.956 41 H 0.065 0.935 42 H 0.038 0.962 43 H -0.007 1.007 44 H 0.098 0.902 45 H 0.252 0.748 46 H 0.060 0.940 47 H 0.049 0.951 48 H 0.047 0.953 49 H 0.057 0.943 50 H 0.037 0.963 51 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.060 -15.163 -12.016 21.806 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C 0.004 3.996 3 N -0.258 5.258 4 C -0.028 4.028 5 C -0.094 4.094 6 C 0.308 3.692 7 O -0.408 6.408 8 N -0.351 5.351 9 C 0.032 3.968 10 H 0.109 0.891 11 C -0.188 4.188 12 H 0.122 0.878 13 C -0.122 4.122 14 C -0.160 4.160 15 C 0.032 3.968 16 N -0.292 5.292 17 C -0.364 4.364 18 H 0.083 0.917 19 C -0.197 4.197 20 N -0.540 5.540 21 Si 0.727 3.273 22 H -0.217 1.217 23 H -0.219 1.219 24 H -0.205 1.205 25 C 0.036 3.964 26 H 0.064 0.936 27 C -0.063 4.063 28 C -0.191 4.191 29 C -0.182 4.182 30 N -0.135 5.135 31 N -0.202 5.202 32 H 0.284 0.716 33 H 0.110 0.890 34 H 0.101 0.899 35 H 0.118 0.882 36 H 0.140 0.860 37 H 0.135 0.865 38 H 0.236 0.764 39 H 0.058 0.942 40 H 0.063 0.937 41 H 0.084 0.916 42 H 0.057 0.943 43 H 0.011 0.989 44 H 0.116 0.884 45 H 0.062 0.938 46 H 0.079 0.921 47 H 0.069 0.931 48 H 0.066 0.934 49 H 0.076 0.924 50 H 0.056 0.944 51 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -9.896 -15.356 -11.207 21.432 hybrid contribution 0.570 0.027 0.057 0.573 sum -9.326 -15.329 -11.150 21.125 Atomic orbital electron populations 1.20389 0.83664 1.05141 1.04413 1.24369 0.96611 0.82772 0.95887 1.70310 1.01294 1.29500 1.24653 1.23234 0.92621 0.89646 0.97251 1.19918 0.93745 0.98970 0.96744 1.20016 0.80233 0.78707 0.90225 1.90721 1.52396 1.51652 1.46049 1.45585 1.32607 1.48254 1.08696 1.21332 0.96157 0.97131 0.82154 0.89126 1.23337 0.99244 0.94076 1.02103 0.87809 1.21032 0.96523 0.95872 0.98758 1.21802 0.98111 0.93939 1.02173 1.20899 0.85635 0.95912 0.94331 1.43802 1.16409 1.02603 1.66409 1.18924 0.85848 1.17577 1.14003 0.91707 1.25045 0.96286 1.01615 0.96721 1.69906 1.23997 1.30617 1.29525 0.86373 0.83749 0.79444 0.77693 1.21659 1.21888 1.20518 1.21757 0.93966 0.86546 0.94096 0.93594 1.21616 0.91944 0.95214 0.97511 1.21710 0.99036 1.00106 0.98288 1.21731 1.02340 1.01987 0.92135 1.77962 0.96674 1.12247 1.26626 1.47918 1.04281 1.09941 1.58047 0.71618 0.89033 0.89919 0.88231 0.85956 0.86524 0.76422 0.94228 0.93680 0.91618 0.94310 0.98885 0.88380 0.93777 0.92120 0.93144 0.93403 0.92383 0.94429 0.88620 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.40 10.51 36.01 0.38 -0.02 16 2 C 0.28 2.92 8.24 -155.69 -1.28 1.64 16 3 N -0.53 -7.37 11.19 -8.16 -0.09 -7.47 16 4 C 0.26 3.59 6.63 -156.85 -1.04 2.55 16 5 C -0.05 -0.60 6.33 -29.04 -0.18 -0.78 16 6 C 0.52 7.91 7.82 -10.99 -0.09 7.83 16 7 O -0.53 -10.40 15.71 5.56 0.09 -10.32 16 8 N -0.70 -9.89 4.26 -58.35 -0.25 -10.14 16 9 C 0.14 2.32 3.80 -72.53 -0.28 2.05 16 10 H 0.09 1.66 7.60 -51.93 -0.39 1.27 16 11 C -0.17 -3.21 2.96 -98.16 -0.29 -3.50 16 12 H 0.10 2.31 5.90 -51.93 -0.31 2.00 16 13 C -0.08 -1.62 5.93 -27.06 -0.16 -1.78 16 14 C -0.12 -2.55 5.90 -26.42 -0.16 -2.71 16 15 C 0.16 3.64 5.73 -3.25 -0.02 3.62 16 16 N -0.57 -13.34 2.90 -169.43 -0.49 -13.83 16 17 C -0.23 -5.95 7.45 -15.06 -0.11 -6.06 16 18 H 0.07 1.64 7.49 -52.48 -0.39 1.25 16 19 C 0.00 0.05 5.13 -17.43 -0.09 -0.04 16 20 N -0.90 -24.65 11.08 55.49 0.61 -24.03 16 21 Si 0.90 21.04 29.58 -169.99 -5.03 16.01 16 22 H -0.29 -6.87 7.11 56.52 0.40 -6.46 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.61 16 24 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 25 C 0.14 2.80 2.99 -72.15 -0.22 2.59 16 26 H 0.05 0.86 6.59 -51.93 -0.34 0.52 16 27 C -0.06 -1.06 1.36 -162.17 -0.22 -1.28 16 28 C -0.13 -1.94 9.20 37.16 0.34 -1.60 16 29 C -0.12 -2.31 8.70 37.16 0.32 -1.99 16 30 N -0.31 -4.18 12.80 32.42 0.41 -3.77 16 31 N -0.48 -4.83 7.45 32.62 0.24 -4.58 16 32 H 0.44 2.57 8.96 -182.34 -1.63 0.93 16 33 H 0.09 0.31 8.14 -51.93 -0.42 -0.12 16 34 H 0.08 0.23 8.14 -51.93 -0.42 -0.19 16 35 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 36 H 0.12 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.12 1.02 8.14 -51.93 -0.42 0.59 16 38 H 0.40 4.73 6.30 -40.82 -0.26 4.47 16 39 H 0.04 0.77 8.14 -51.93 -0.42 0.34 16 40 H 0.04 0.82 7.98 -51.93 -0.41 0.41 16 41 H 0.07 1.55 8.14 -51.93 -0.42 1.13 16 42 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 43 H -0.01 -0.15 8.14 -51.93 -0.42 -0.57 16 44 H 0.10 2.57 5.68 -51.93 -0.29 2.27 16 45 H 0.25 6.84 8.31 -40.82 -0.34 6.50 16 46 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 47 H 0.05 0.68 8.07 -51.93 -0.42 0.26 16 48 H 0.05 0.59 6.38 -51.93 -0.33 0.26 16 49 H 0.06 1.13 6.08 -51.93 -0.32 0.82 16 50 H 0.04 0.60 8.03 -51.93 -0.42 0.18 16 51 H 0.10 2.03 5.49 -51.93 -0.29 1.75 16 LS Contribution 395.22 15.07 5.96 5.96 Total: -1.00 -34.19 395.22 -10.80 -44.98 By element: Atomic # 1 Polarization: 15.84 SS G_CDS: -9.17 Total: 6.67 kcal Atomic # 6 Polarization: 3.61 SS G_CDS: -3.09 Total: 0.52 kcal Atomic # 7 Polarization: -64.26 SS G_CDS: 0.44 Total: -63.82 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.03 Total: 16.01 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -34.19 -10.80 -44.98 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.379 kcal (2) G-P(sol) polarization free energy of solvation -34.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.193 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.798 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.983 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.396 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds