Wall clock time and date at job start Wed Apr 1 2020 05:29:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 N 1.30827 * 125.96681 * 2 1 4 4 C 1.33238 * 109.83157 * 180.02562 * 3 2 1 5 5 C 1.50701 * 125.52546 * 180.02562 * 4 3 2 6 6 C 1.50695 * 109.47331 * 90.00106 * 5 4 3 7 7 O 1.21282 * 119.99837 * 359.97438 * 6 5 4 8 8 N 1.34774 * 120.00002 * 179.97438 * 6 5 4 9 9 C 1.46506 * 120.00048 * 180.02562 * 8 6 5 10 10 H 1.09001 * 113.22232 * 28.29883 * 9 8 6 11 11 C 1.50004 * 114.12387 * 255.49548 * 9 8 6 12 12 H 1.08995 * 112.50524 * 169.97692 * 11 9 8 13 13 C 1.51202 * 126.17080 * 27.58654 * 11 9 8 14 14 C 1.54097 * 106.19304 * 198.57422 * 13 11 9 15 15 C 1.52495 * 112.67371 * 55.43326 * 14 13 11 16 16 N 1.48407 * 111.87194 * 313.21595 * 15 14 13 17 17 C 1.36937 * 123.16965 * 231.84155 * 16 15 14 18 18 H 1.08003 * 119.99932 * 210.89523 * 17 16 15 19 19 C 1.38812 * 119.99902 * 30.88662 * 17 16 15 20 20 N 1.31615 * 120.00085 * 13.89400 * 19 17 16 21 21 Si 1.86804 * 119.99894 * 193.88946 * 19 17 16 22 22 H 1.48495 * 109.46980 * 90.00360 * 21 19 17 23 23 H 1.48494 * 109.46798 * 210.00616 * 21 19 17 24 24 H 1.48501 * 109.47165 * 330.00338 * 21 19 17 25 25 C 1.45385 * 113.66454 * 51.83395 * 16 15 14 26 26 H 1.09004 * 112.08661 * 59.76328 * 25 16 15 27 27 C 1.49962 * 126.67031 * 204.97298 * 25 16 15 28 28 C 1.52999 * 114.08801 * 253.26738 * 27 25 16 29 29 C 1.52999 * 114.08390 * 25.69474 * 27 25 16 30 30 N 1.30715 * 108.94703 * 0.26587 * 4 3 2 31 31 N 1.34436 * 125.95816 * 180.02562 * 2 1 3 32 32 H 0.96993 * 126.81942 * 359.97438 * 31 2 1 33 33 H 1.08997 * 109.47038 * 89.97420 * 1 2 3 34 34 H 1.08999 * 109.47194 * 209.97795 * 1 2 3 35 35 H 1.09000 * 109.46528 * 329.97846 * 1 2 3 36 36 H 1.09003 * 109.46992 * 329.99638 * 5 4 3 37 37 H 1.09001 * 109.46941 * 209.99991 * 5 4 3 38 38 H 0.96999 * 120.00349 * 0.02562 * 8 6 5 39 39 H 1.08996 * 110.10995 * 79.40267 * 13 11 9 40 40 H 1.08999 * 110.10224 * 317.73475 * 13 11 9 41 41 H 1.09002 * 108.83808 * 294.60920 * 14 13 11 42 42 H 1.09001 * 108.84079 * 176.26244 * 14 13 11 43 43 H 1.08997 * 109.00098 * 73.83156 * 15 14 13 44 44 H 1.08996 * 108.99828 * 192.60248 * 15 14 13 45 45 H 0.96998 * 119.99792 * 179.97438 * 20 19 17 46 46 H 1.09001 * 109.47100 * 60.00376 * 28 27 25 47 47 H 1.08996 * 109.47454 * 180.02562 * 28 27 25 48 48 H 1.09004 * 109.47085 * 300.00690 * 28 27 25 49 49 H 1.09001 * 109.46690 * 67.14848 * 29 27 25 50 50 H 1.09000 * 109.46842 * 187.14283 * 29 27 25 51 51 H 1.08993 * 109.46867 * 307.14093 * 29 27 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2754 1.0589 0.0000 4 6 3.5553 0.6886 -0.0006 5 6 4.7373 1.6234 -0.0002 6 6 5.1317 1.9340 1.4207 7 8 4.5135 1.4449 2.3423 8 7 6.1714 2.7554 1.6672 9 6 6.5552 3.0570 3.0486 10 1 6.3099 2.2570 3.7472 11 6 6.1475 4.4236 3.5137 12 1 6.2867 4.5579 4.5864 13 6 4.9704 5.2249 3.0055 14 6 5.2368 6.6865 3.4146 15 6 6.5802 7.2026 2.9101 16 7 7.6766 6.2370 3.1707 17 6 8.8437 6.5805 3.7994 18 1 9.7619 6.0692 3.5504 19 6 8.8466 7.5858 4.7565 20 7 7.7100 8.0193 5.2591 21 14 10.4637 8.3235 5.3313 22 1 10.8122 9.4829 4.4714 23 1 10.3291 8.7744 6.7397 24 1 11.5352 7.2994 5.2397 25 6 7.3949 4.8921 2.6959 26 1 7.2193 4.8655 1.6205 27 6 7.9856 3.6162 3.2174 28 6 9.0164 2.9780 2.2841 29 6 8.4520 3.6930 4.6726 30 7 3.6194 -0.6170 -0.0067 31 7 2.2964 -1.0882 -0.0005 32 1 2.0092 -2.0146 -0.0006 33 1 -0.3633 0.0005 -1.0276 34 1 -0.3633 -0.8902 0.5135 35 1 -0.3632 0.8898 0.5142 36 1 4.4701 2.5472 -0.5134 37 1 5.5742 1.1511 -0.5146 38 1 6.6656 3.1469 0.9301 39 1 4.0484 4.8694 3.4654 40 1 4.9039 5.1459 1.9204 41 1 5.2187 6.7565 4.5022 42 1 4.4436 7.3154 3.0102 43 1 6.5116 7.3805 1.8369 44 1 6.8094 8.1434 3.4104 45 1 7.7121 8.7216 5.9282 46 1 9.8417 3.6721 2.1253 47 1 9.3947 2.0601 2.7340 48 1 8.5469 2.7469 1.3279 49 1 7.5874 3.8136 5.3253 50 1 8.9795 2.7757 4.9340 51 1 9.1214 4.5445 4.7950 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001087284462.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:29:47 Heat of formation + Delta-G solvation = 96.958148 kcal Electronic energy + Delta-G solvation = -32070.345884 eV Core-core repulsion = 28007.996276 eV Total energy + Delta-G solvation = -4062.349608 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.42 seconds Orbital eigenvalues (eV) -43.16305 -42.60069 -40.04384 -36.92077 -34.72112 -34.67281 -34.33279 -33.34049 -32.11888 -31.04128 -30.47758 -28.68891 -28.26581 -27.47314 -26.16800 -23.94331 -23.18460 -22.24993 -21.97686 -21.15456 -20.51847 -19.63856 -18.86412 -18.48909 -18.20872 -16.98200 -16.51313 -16.47497 -16.29772 -15.69013 -15.55614 -15.32844 -15.24629 -14.97954 -14.69576 -14.49066 -14.25413 -14.07291 -13.88182 -13.64250 -13.59963 -13.45332 -13.12491 -13.11941 -12.89691 -12.75119 -12.72653 -12.64222 -12.54337 -12.22181 -12.05689 -12.01304 -11.68304 -11.42578 -11.28104 -11.19411 -11.08413 -10.90140 -10.80941 -10.59330 -10.43750 -10.19275 -9.89675 -8.37612 -7.73284 -5.19029 0.57379 1.49166 1.51790 1.58036 1.63193 1.65103 1.76136 2.30458 2.57297 3.03500 3.32525 3.44389 3.54678 3.56160 3.79130 3.83252 3.96063 3.98463 4.18678 4.33669 4.40883 4.44391 4.45108 4.55241 4.63841 4.70507 4.71425 4.77161 4.80442 4.82219 4.94435 5.02358 5.06196 5.09491 5.15348 5.20129 5.22606 5.25799 5.29171 5.36006 5.37454 5.46013 5.59932 5.65335 5.70354 5.74412 5.81028 5.93755 6.22360 6.53812 6.57750 7.08852 7.21979 7.28067 7.93665 8.59162 9.31255 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022449 B = 0.002627 C = 0.002462 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1246.960470 B =10657.534381 C =11371.127467 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.284 3.716 3 N -0.570 5.570 4 C 0.237 3.763 5 C -0.045 4.045 6 C 0.526 3.474 7 O -0.580 6.580 8 N -0.687 5.687 9 C 0.158 3.842 10 H 0.077 0.923 11 C -0.167 4.167 12 H 0.067 0.933 13 C -0.075 4.075 14 C -0.111 4.111 15 C 0.158 3.842 16 N -0.585 5.585 17 C -0.224 4.224 18 H 0.067 0.933 19 C -0.050 4.050 20 N -0.925 5.925 21 Si 0.951 3.049 22 H -0.292 1.292 23 H -0.303 1.303 24 H -0.269 1.269 25 C 0.139 3.861 26 H 0.069 0.931 27 C -0.057 4.057 28 C -0.129 4.129 29 C -0.121 4.121 30 N -0.336 5.336 31 N -0.475 5.475 32 H 0.455 0.545 33 H 0.115 0.885 34 H 0.110 0.890 35 H 0.094 0.906 36 H 0.145 0.855 37 H 0.149 0.851 38 H 0.415 0.585 39 H 0.035 0.965 40 H 0.064 0.936 41 H 0.029 0.971 42 H 0.057 0.943 43 H 0.008 0.992 44 H 0.065 0.935 45 H 0.243 0.757 46 H 0.053 0.947 47 H 0.063 0.937 48 H 0.073 0.927 49 H 0.036 0.964 50 H 0.062 0.938 51 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.224 -17.163 -14.707 24.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.006 3.994 3 N -0.300 5.300 4 C -0.046 4.046 5 C -0.087 4.087 6 C 0.313 3.687 7 O -0.459 6.459 8 N -0.339 5.339 9 C 0.051 3.949 10 H 0.095 0.905 11 C -0.188 4.188 12 H 0.086 0.914 13 C -0.112 4.112 14 C -0.150 4.150 15 C 0.033 3.967 16 N -0.307 5.307 17 C -0.354 4.354 18 H 0.085 0.915 19 C -0.245 4.245 20 N -0.571 5.571 21 Si 0.782 3.218 22 H -0.219 1.219 23 H -0.230 1.230 24 H -0.194 1.194 25 C 0.032 3.968 26 H 0.086 0.914 27 C -0.058 4.058 28 C -0.186 4.186 29 C -0.178 4.178 30 N -0.166 5.166 31 N -0.195 5.195 32 H 0.303 0.697 33 H 0.133 0.867 34 H 0.129 0.871 35 H 0.113 0.887 36 H 0.163 0.837 37 H 0.167 0.833 38 H 0.254 0.746 39 H 0.054 0.946 40 H 0.083 0.917 41 H 0.048 0.952 42 H 0.075 0.925 43 H 0.026 0.974 44 H 0.083 0.917 45 H 0.053 0.947 46 H 0.072 0.928 47 H 0.082 0.918 48 H 0.092 0.908 49 H 0.055 0.945 50 H 0.081 0.919 51 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -10.047 -17.394 -13.948 24.455 hybrid contribution 0.523 0.579 0.891 1.185 sum -9.523 -16.816 -13.057 23.322 Atomic orbital electron populations 1.20635 0.80224 1.06245 1.06218 1.25222 0.98288 0.82069 0.93780 1.70306 1.01812 1.31372 1.26510 1.23645 0.93376 0.90093 0.97521 1.20024 0.94334 1.00064 0.94287 1.20619 0.79283 0.77554 0.91263 1.90707 1.53914 1.53399 1.47899 1.45418 1.32653 1.48091 1.07783 1.20940 0.95361 0.95071 0.83541 0.90538 1.23208 0.99321 0.96110 1.00166 0.91443 1.20938 0.96235 0.94318 0.99746 1.21656 0.97777 0.95739 0.99820 1.20804 0.86445 0.94855 0.94605 1.43982 1.15965 1.04406 1.66353 1.19116 0.86681 1.16617 1.12959 0.91538 1.25646 0.98499 1.02793 0.97606 1.70071 1.25504 1.31211 1.30362 0.85496 0.81255 0.78704 0.76392 1.21897 1.23046 1.19376 1.22045 0.94396 0.85407 0.94926 0.91407 1.21540 0.93093 0.94094 0.97070 1.21684 0.97977 1.00184 0.98765 1.21626 1.01087 1.01934 0.93188 1.77842 0.98739 1.12437 1.27551 1.47859 1.03298 1.10938 1.57438 0.69677 0.86705 0.87133 0.88736 0.83689 0.83309 0.74569 0.94615 0.91699 0.95171 0.92478 0.97448 0.91659 0.94739 0.92754 0.91751 0.90790 0.94461 0.91909 0.91456 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.57 10.51 71.24 0.75 0.17 16 2 C 0.28 5.37 8.24 138.23 1.14 6.51 16 3 N -0.57 -15.11 11.19 -179.72 -2.01 -17.12 16 4 C 0.24 6.26 6.63 138.63 0.92 7.18 16 5 C -0.05 -0.93 6.33 29.10 0.18 -0.74 16 6 C 0.53 14.76 7.82 87.66 0.69 15.45 16 7 O -0.58 -22.22 15.71 -3.04 -0.05 -22.27 16 8 N -0.69 -17.49 4.26 -456.92 -1.95 -19.44 16 9 C 0.16 5.11 3.80 42.01 0.16 5.27 16 10 H 0.08 2.77 7.60 -2.39 -0.02 2.75 16 11 C -0.17 -6.43 2.96 -15.68 -0.05 -6.48 16 12 H 0.07 3.13 5.90 -2.39 -0.01 3.12 16 13 C -0.07 -2.83 5.93 30.38 0.18 -2.65 16 14 C -0.11 -4.72 5.90 30.80 0.18 -4.54 16 15 C 0.16 7.37 5.73 85.84 0.49 7.86 16 16 N -0.59 -27.41 2.90 -689.96 -2.00 -29.41 16 17 C -0.22 -11.44 7.45 84.03 0.63 -10.82 16 18 H 0.07 3.35 7.49 -2.91 -0.02 3.33 16 19 C -0.05 -2.70 5.13 84.86 0.44 -2.26 16 20 N -0.92 -52.99 11.08 21.65 0.24 -52.75 16 21 Si 0.95 44.16 29.58 68.60 2.03 46.18 16 22 H -0.29 -13.52 7.11 99.48 0.71 -12.81 16 23 H -0.30 -14.50 7.11 99.48 0.71 -13.79 16 24 H -0.27 -11.86 7.11 99.48 0.71 -11.16 16 25 C 0.14 5.23 2.99 42.86 0.13 5.36 16 26 H 0.07 2.30 6.59 -2.38 -0.02 2.28 16 27 C -0.06 -1.86 1.36 -57.14 -0.08 -1.94 16 28 C -0.13 -3.32 9.20 71.98 0.66 -2.65 16 29 C -0.12 -4.49 8.70 71.98 0.63 -3.86 16 30 N -0.34 -8.69 12.80 -51.33 -0.66 -9.34 16 31 N -0.48 -8.67 7.45 -50.71 -0.38 -9.04 16 32 H 0.45 4.44 8.96 -213.11 -1.91 2.53 16 33 H 0.11 0.40 8.14 -2.39 -0.02 0.38 16 34 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 35 H 0.09 0.89 8.14 -2.39 -0.02 0.87 16 36 H 0.15 2.27 8.14 -2.39 -0.02 2.25 16 37 H 0.15 2.02 8.14 -2.39 -0.02 2.00 16 38 H 0.42 8.08 6.30 -92.71 -0.58 7.50 16 39 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 40 H 0.06 2.21 7.98 -2.39 -0.02 2.19 16 41 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 42 H 0.06 2.18 8.14 -2.39 -0.02 2.16 16 43 H 0.01 0.33 8.14 -2.39 -0.02 0.31 16 44 H 0.07 3.53 5.68 -2.39 -0.01 3.51 16 45 H 0.24 13.83 8.31 -92.71 -0.77 13.05 16 46 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 47 H 0.06 1.50 8.07 -2.39 -0.02 1.48 16 48 H 0.07 1.51 6.38 -2.39 -0.02 1.49 16 49 H 0.04 1.51 6.08 -2.39 -0.01 1.49 16 50 H 0.06 1.96 8.03 -2.39 -0.02 1.94 16 51 H 0.07 2.89 5.49 -2.39 -0.01 2.88 16 Total: -1.00 -77.82 395.22 0.75 -77.07 By element: Atomic # 1 Polarization: 25.78 SS G_CDS: -1.52 Total: 24.26 kcal Atomic # 6 Polarization: 4.81 SS G_CDS: 7.04 Total: 11.86 kcal Atomic # 7 Polarization: -130.35 SS G_CDS: -6.75 Total: -137.10 kcal Atomic # 8 Polarization: -22.22 SS G_CDS: -0.05 Total: -22.27 kcal Atomic # 14 Polarization: 44.16 SS G_CDS: 2.03 Total: 46.18 kcal Total: -77.82 0.75 -77.07 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001087284462.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 174.025 kcal (2) G-P(sol) polarization free energy of solvation -77.819 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 96.206 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.067 kcal (6) G-S(sol) free energy of system = (1) + (5) 96.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.42 seconds