Wall clock time and date at job start Wed Apr 1 2020 05:11:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.36596 * 126.58084 * 2 1 4 4 C 1.47521 * 125.77223 * 359.97288 * 3 2 1 5 5 O 1.21597 * 119.99817 * 0.02562 * 4 3 2 6 6 N 1.34764 * 120.00196 * 180.02562 * 4 3 2 7 7 C 1.48102 * 125.74901 * 179.97438 * 6 4 3 8 8 C 1.53559 * 103.44121 * 204.37561 * 7 6 4 9 9 H 1.08997 * 108.15923 * 73.52050 * 8 7 6 10 10 C 1.49844 * 114.52152 * 195.45552 * 8 7 6 11 11 C 1.51336 * 114.41159 * 66.32124 * 10 8 7 12 12 N 1.44538 * 113.15867 * 35.18797 * 11 10 8 13 13 C 1.36943 * 117.26649 * 150.83014 * 12 11 10 14 14 H 1.07993 * 120.00002 * 333.71003 * 13 12 11 15 15 C 1.38812 * 119.99710 * 153.71866 * 13 12 11 16 16 N 1.31614 * 119.99898 * 158.51269 * 15 13 12 17 17 Si 1.86798 * 120.00004 * 338.51707 * 15 13 12 18 18 H 1.48496 * 109.47574 * 86.99851 * 17 15 13 19 19 H 1.48506 * 109.47063 * 207.00056 * 17 15 13 20 20 H 1.48500 * 109.46863 * 326.99554 * 17 15 13 21 21 C 1.44405 * 125.45925 * 330.85224 * 12 11 10 22 22 C 1.52989 * 113.17375 * 34.68075 * 21 12 11 23 23 H 1.09007 * 112.80226 * 84.24670 * 22 21 12 24 24 C 1.47471 * 125.74452 * 0.02973 * 6 4 3 25 25 N 1.34398 * 108.45730 * 180.24217 * 3 2 1 26 26 N 1.28768 * 109.52200 * 359.58401 * 25 3 2 27 27 N 1.34815 * 126.57497 * 179.97438 * 2 1 3 28 28 C 1.46497 * 126.60026 * 0.02562 * 27 2 1 29 29 C 1.53006 * 109.46792 * 119.99934 * 28 27 2 30 30 C 1.52990 * 109.47364 * 239.99773 * 28 27 2 31 31 H 1.09003 * 109.46949 * 89.97989 * 1 2 3 32 32 H 1.09002 * 109.47284 * 209.97491 * 1 2 3 33 33 H 1.08998 * 109.46880 * 329.97753 * 1 2 3 34 34 H 1.08999 * 110.63043 * 322.95011 * 7 6 4 35 35 H 1.08997 * 110.62867 * 85.98466 * 7 6 4 36 36 H 1.08998 * 108.47070 * 305.09496 * 10 8 7 37 37 H 1.08999 * 108.47094 * 187.54668 * 10 8 7 38 38 H 1.08997 * 108.74887 * 156.13868 * 11 10 8 39 39 H 1.09004 * 108.74640 * 274.36409 * 11 10 8 40 40 H 0.97007 * 120.00244 * 179.97438 * 16 15 13 41 41 H 1.08996 * 108.74281 * 155.63481 * 21 12 11 42 42 H 1.08999 * 108.74032 * 273.84884 * 21 12 11 43 43 H 1.08996 * 110.04176 * 62.75894 * 24 6 4 44 44 H 1.09001 * 110.07724 * 301.32822 * 24 6 4 45 45 H 1.08998 * 109.46980 * 0.02562 * 28 27 2 46 46 H 1.09002 * 109.46559 * 180.02562 * 29 28 27 47 47 H 1.08994 * 109.47256 * 299.99682 * 29 28 27 48 48 H 1.08993 * 109.47470 * 60.00443 * 29 28 27 49 49 H 1.09006 * 109.47074 * 60.00305 * 30 28 27 50 50 H 1.08997 * 109.47496 * 179.97438 * 30 28 27 51 51 H 1.08998 * 109.47542 * 300.00231 * 30 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3211 1.0969 0.0000 4 6 1.8739 2.5027 -0.0006 5 8 0.6860 2.7628 -0.0006 6 7 2.7817 3.4986 -0.0010 7 6 2.4764 4.9478 -0.0022 8 6 3.7341 5.5772 -0.6187 9 1 3.7313 5.3644 -1.6877 10 6 3.8543 7.0565 -0.4123 11 6 4.0546 7.4727 1.0288 12 7 4.8581 6.5383 1.7840 13 6 5.5971 7.0417 2.8212 14 1 5.9150 8.0736 2.8068 15 6 5.9377 6.2253 3.8910 16 7 6.9611 6.5376 4.6573 17 14 4.9437 4.6834 4.2427 18 1 5.4850 3.5529 3.4464 19 1 5.0314 4.3570 5.6888 20 1 3.5242 4.9145 3.8727 21 6 4.9471 5.1185 1.5359 22 6 4.8594 4.7601 0.0511 23 1 5.8199 4.8346 -0.4588 24 6 4.2467 3.3290 -0.0016 25 7 3.5984 0.6788 -0.0054 26 7 3.6298 -0.6085 0.0001 27 7 2.3104 -1.0827 0.0005 28 6 1.8863 -2.4849 0.0006 29 6 2.4296 -3.1820 -1.2484 30 6 2.4286 -3.1817 1.2500 31 1 -0.3633 0.0004 -1.0277 32 1 -0.3634 -0.8902 0.5134 33 1 -0.3633 0.8898 0.5142 34 1 1.6007 5.1553 -0.6172 35 1 2.3270 5.3096 1.0151 36 1 2.9477 7.5321 -0.7864 37 1 4.6996 7.4191 -0.9972 38 1 4.5411 8.4479 1.0474 39 1 3.0789 7.5595 1.5072 40 1 7.1990 5.9673 5.4051 41 1 5.8957 4.7531 1.9290 42 1 4.1344 4.6192 2.0635 43 1 4.5634 2.8203 -0.9121 44 1 4.5575 2.7572 0.8728 45 1 0.7975 -2.5352 -0.0003 46 1 2.1137 -4.2253 -1.2485 47 1 2.0432 -2.6857 -2.1386 48 1 3.5183 -3.1318 -1.2480 49 1 2.0416 -2.6850 2.1398 50 1 2.1128 -4.2249 1.2503 51 1 3.5174 -3.1314 1.2505 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001088155017.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:11:07 Heat of formation + Delta-G solvation = 93.130953 kcal Electronic energy + Delta-G solvation = -32222.571839 eV Core-core repulsion = 28160.056271 eV Total energy + Delta-G solvation = -4062.515568 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.42950 -40.23256 -38.32712 -36.72729 -35.62171 -33.29477 -33.02123 -31.40330 -31.15722 -30.72905 -28.35283 -27.88625 -27.40361 -25.42129 -24.52559 -24.19603 -22.86673 -21.90447 -21.31030 -20.48297 -19.33181 -18.29504 -17.48070 -16.68120 -16.56417 -16.32763 -16.02637 -15.64814 -14.97105 -14.79509 -14.41158 -14.37853 -14.21250 -13.69019 -13.63459 -13.47797 -13.42198 -13.32897 -13.00870 -12.81664 -12.79570 -12.69732 -12.56858 -12.26924 -12.08328 -12.06458 -12.02975 -11.72728 -11.48199 -11.21101 -11.06570 -10.88077 -10.50475 -10.38190 -10.35958 -10.17011 -9.96317 -9.86808 -9.55526 -9.29974 -9.24950 -8.53098 -8.40828 -6.87480 -5.92283 -3.28304 0.98425 1.70083 1.78216 3.05141 3.33143 3.39629 3.54013 3.57926 3.86569 4.00982 4.24502 4.32735 4.35131 4.51341 4.56796 4.74570 4.80383 4.86914 4.96681 5.02525 5.07396 5.13337 5.14366 5.15773 5.21564 5.39358 5.42285 5.47647 5.54947 5.57624 5.67655 5.69649 5.73257 5.74634 5.84512 5.94950 6.01099 6.08608 6.15245 6.26293 6.30201 6.35473 6.42692 6.52720 6.66426 6.76012 6.80952 6.95727 7.61614 7.85227 8.10506 8.22895 8.37619 9.10178 9.81346 10.05350 11.23464 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.013976 B = 0.003358 C = 0.002977 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2002.965961 B = 8336.561928 C = 9402.831025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.095 4.095 2 C 0.120 3.880 3 C -0.100 4.100 4 C 0.617 3.383 5 O -0.546 6.546 6 N -0.601 5.601 7 C 0.115 3.885 8 C -0.086 4.086 9 H 0.069 0.931 10 C -0.114 4.114 11 C 0.161 3.839 12 N -0.600 5.600 13 C -0.272 4.272 14 H 0.086 0.914 15 C 0.028 3.972 16 N -0.906 5.906 17 Si 0.884 3.116 18 H -0.286 1.286 19 H -0.306 1.306 20 H -0.277 1.277 21 C 0.143 3.857 22 C -0.109 4.109 23 H 0.103 0.897 24 C 0.111 3.889 25 N -0.197 5.197 26 N -0.066 5.066 27 N -0.359 5.359 28 C 0.144 3.856 29 C -0.162 4.162 30 C -0.164 4.164 31 H 0.090 0.910 32 H 0.073 0.927 33 H 0.112 0.888 34 H 0.078 0.922 35 H 0.078 0.922 36 H 0.062 0.938 37 H 0.064 0.936 38 H 0.052 0.948 39 H 0.012 0.988 40 H 0.262 0.738 41 H 0.068 0.932 42 H 0.015 0.985 43 H 0.072 0.928 44 H 0.077 0.923 45 H 0.109 0.891 46 H 0.082 0.918 47 H 0.063 0.937 48 H 0.075 0.925 49 H 0.064 0.936 50 H 0.082 0.918 51 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.787 -18.616 -13.964 26.553 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C -0.018 4.018 3 C -0.239 4.239 4 C 0.404 3.596 5 O -0.424 6.424 6 N -0.332 5.332 7 C -0.006 4.006 8 C -0.106 4.106 9 H 0.088 0.912 10 C -0.153 4.153 11 C 0.036 3.964 12 N -0.323 5.323 13 C -0.400 4.400 14 H 0.104 0.896 15 C -0.171 4.171 16 N -0.549 5.549 17 Si 0.715 3.285 18 H -0.213 1.213 19 H -0.234 1.234 20 H -0.203 1.203 21 C 0.017 3.983 22 C -0.129 4.129 23 H 0.121 0.879 24 C -0.012 4.012 25 N -0.070 5.070 26 N -0.046 5.046 27 N -0.146 5.146 28 C 0.043 3.957 29 C -0.220 4.220 30 C -0.222 4.222 31 H 0.109 0.891 32 H 0.091 0.909 33 H 0.131 0.869 34 H 0.096 0.904 35 H 0.096 0.904 36 H 0.081 0.919 37 H 0.083 0.917 38 H 0.070 0.930 39 H 0.030 0.970 40 H 0.072 0.928 41 H 0.086 0.914 42 H 0.032 0.968 43 H 0.090 0.910 44 H 0.095 0.905 45 H 0.126 0.874 46 H 0.101 0.899 47 H 0.082 0.918 48 H 0.094 0.906 49 H 0.083 0.917 50 H 0.101 0.899 51 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -11.905 -19.009 -13.850 26.361 hybrid contribution -1.367 -0.943 0.428 1.715 sum -13.272 -19.952 -13.421 27.465 Atomic orbital electron populations 1.20707 0.84842 1.05299 1.04491 1.21870 0.96155 0.86367 0.97362 1.21130 0.89113 0.95158 1.18517 1.16293 0.84625 0.81957 0.76731 1.90735 1.15433 1.83445 1.52835 1.48445 1.07379 1.06353 1.71055 1.22234 0.97964 0.78330 1.02094 1.21123 0.94250 0.95756 0.99423 0.91228 1.20677 1.01644 0.93804 0.99180 1.19953 0.94063 0.93256 0.89173 1.43075 1.51911 1.02587 1.34746 1.19028 1.26077 0.98618 0.96319 0.89645 1.25214 0.97458 0.97861 0.96583 1.69847 1.25544 1.39639 1.19890 0.87097 0.81796 0.83991 0.75645 1.21292 1.23424 1.20307 1.20890 1.00080 0.85530 0.91797 1.22890 0.98193 0.92587 0.99271 0.87918 1.22598 0.78429 0.97614 1.02575 1.74766 1.18917 1.03845 1.09491 1.81947 0.96203 1.03461 1.22940 1.50642 1.06397 1.07138 1.50388 1.21631 1.00398 0.75357 0.98338 1.22150 1.03302 1.00790 0.95725 1.22167 1.03382 1.00813 0.95815 0.89144 0.90858 0.86919 0.90374 0.90385 0.91900 0.91691 0.92994 0.97044 0.92774 0.91405 0.96770 0.90978 0.90483 0.87363 0.89937 0.91767 0.90620 0.91675 0.89917 0.90579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.82 9.41 36.01 0.34 -0.48 16 2 C 0.12 1.46 7.02 -81.87 -0.57 0.89 16 3 C -0.10 -1.56 6.85 -83.55 -0.57 -2.13 16 4 C 0.62 10.64 7.86 -12.48 -0.10 10.54 16 5 O -0.55 -9.86 15.00 5.28 0.08 -9.78 16 6 N -0.60 -10.41 3.33 -170.76 -0.57 -10.97 16 7 C 0.12 1.92 5.85 -2.87 -0.02 1.91 16 8 C -0.09 -1.34 2.65 -91.19 -0.24 -1.58 16 9 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 10 C -0.11 -1.75 5.46 -29.14 -0.16 -1.91 16 11 C 0.16 3.17 5.94 -5.93 -0.04 3.14 16 12 N -0.60 -14.34 2.98 -177.44 -0.53 -14.87 16 13 C -0.27 -7.68 9.75 -15.06 -0.15 -7.82 16 14 H 0.09 2.55 7.91 -52.49 -0.42 2.14 16 15 C 0.03 0.82 5.08 -17.43 -0.09 0.74 16 16 N -0.91 -28.19 13.97 55.49 0.78 -27.41 16 17 Si 0.88 23.60 23.88 -169.99 -4.06 19.54 16 18 H -0.29 -7.38 6.55 56.52 0.37 -7.01 16 19 H -0.31 -8.29 7.11 56.52 0.40 -7.89 16 20 H -0.28 -7.47 6.75 56.52 0.38 -7.09 16 21 C 0.14 3.20 2.74 -5.16 -0.01 3.19 16 22 C -0.11 -1.91 3.99 -88.44 -0.35 -2.27 16 23 H 0.10 1.66 8.14 -51.93 -0.42 1.24 16 24 C 0.11 1.88 4.64 -2.03 -0.01 1.87 16 25 N -0.20 -3.19 9.81 32.85 0.32 -2.87 16 26 N -0.07 -0.95 13.67 60.35 0.82 -0.13 16 27 N -0.36 -3.94 3.28 -50.41 -0.17 -4.11 16 28 C 0.14 0.94 3.68 -67.93 -0.25 0.69 16 29 C -0.16 -0.87 9.47 37.16 0.35 -0.52 16 30 C -0.16 -0.98 9.47 37.15 0.35 -0.63 16 31 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 32 H 0.07 0.41 7.18 -51.93 -0.37 0.04 16 33 H 0.11 1.21 6.43 -51.93 -0.33 0.88 16 34 H 0.08 1.19 8.06 -51.93 -0.42 0.78 16 35 H 0.08 1.49 7.08 -51.93 -0.37 1.13 16 36 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 37 H 0.06 0.95 8.14 -51.93 -0.42 0.52 16 38 H 0.05 1.02 7.81 -51.93 -0.41 0.61 16 39 H 0.01 0.23 8.14 -51.93 -0.42 -0.19 16 40 H 0.26 7.78 8.31 -40.82 -0.34 7.44 16 41 H 0.07 1.68 5.66 -51.93 -0.29 1.39 16 42 H 0.02 0.36 3.98 -51.93 -0.21 0.15 16 43 H 0.07 1.11 7.80 -51.93 -0.40 0.71 16 44 H 0.08 1.45 7.19 -51.93 -0.37 1.08 16 45 H 0.11 0.44 6.79 -51.93 -0.35 0.08 16 46 H 0.08 0.24 8.14 -51.93 -0.42 -0.18 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 49 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 50 H 0.08 0.28 8.14 -51.93 -0.42 -0.14 16 51 H 0.08 0.57 8.14 -51.93 -0.42 0.15 16 LS Contribution 388.09 15.07 5.85 5.85 Total: -1.00 -34.89 388.09 -7.20 -42.09 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -8.20 Total: -2.93 kcal Atomic # 6 Polarization: 7.12 SS G_CDS: -1.52 Total: 5.60 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: 0.66 Total: -60.36 kcal Atomic # 8 Polarization: -9.86 SS G_CDS: 0.08 Total: -9.78 kcal Atomic # 14 Polarization: 23.60 SS G_CDS: -4.06 Total: 19.54 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -34.89 -7.20 -42.09 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001088155017.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 135.221 kcal (2) G-P(sol) polarization free energy of solvation -34.894 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 100.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.196 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 93.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds